RNA–Protein interactions for RNA: ENST00000497139.5

VEGFA-215, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 2,746 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-215ENST00000497139 PKD1P98161 4303 aa6.66□□□□□ -1.34
VEGFA-215ENST00000497139 LRP1BQ9NZR2 4599 aa6.66□□□□□ -1.34
VEGFA-215ENST00000497139 FAT2Q9NYQ8 4349 aa6.65□□□□□ -1.34
VEGFA-215ENST00000497139 XP32Q5T750 250 aa6.64□□□□□ -1.35
VEGFA-215ENST00000497139 SACSQ9NZJ4 4579 aa6.63□□□□□ -1.35
VEGFA-215ENST00000497139 VPS13BQ7Z7G8 4022 aa6.61□□□□□ -1.35
VEGFA-215ENST00000497139 KRTAP12-2P59991 146 aa6.6□□□□□ -1.35
VEGFA-215ENST00000497139 KMT2CQ8NEZ4 4911 aaKnown RBP6.57□□□□□ -1.36
VEGFA-215ENST00000497139 KRTAP12-1P59990 96 aa6.56□□□□□ -1.36
VEGFA-215ENST00000497139 LUZP6Q538Z0 58 aa6.5□□□□□ -1.37
VEGFA-215ENST00000497139 PKHD1P08F94 4074 aa6.5□□□□□ -1.37
VEGFA-215ENST00000497139 PKHD1L1Q86WI1 4243 aa6.5□□□□□ -1.37
VEGFA-215ENST00000497139 RYR2Q92736 4967 aa6.49□□□□□ -1.37
VEGFA-215ENST00000497139 M0QZ58 72 aa6.48□□□□□ -1.37
VEGFA-215ENST00000497139 A0A1B0GVY2 172 aa6.44□□□□□ -1.38
VEGFA-215ENST00000497139 SMR3BP02814 79 aaPredicted RBP6.41□□□□□ -1.38
VEGFA-215ENST00000497139 RYR3Q15413 4870 aa6.41□□□□□ -1.38
VEGFA-215ENST00000497139 KRTAP10-4P60372 401 aaPredicted RBP6.41□□□□□ -1.38
VEGFA-215ENST00000497139 PLAC4Q8WY50 150 aa6.4□□□□□ -1.39
VEGFA-215ENST00000497139 DYNC1H1Q14204 4646 aaKnown RBP6.39□□□□□ -1.39
VEGFA-215ENST00000497139 DMBT1Q9UGM3 2413 aaPredicted RBP6.37□□□□□ -1.39
VEGFA-215ENST00000497139 KRTAP10-8P60410 259 aa6.36□□□□□ -1.39
VEGFA-215ENST00000497139 APOBP04114 4563 aaKnown RBP6.32□□□□□ -1.4
VEGFA-215ENST00000497139 FAT1Q14517 4588 aa6.29□□□□□ -1.4
VEGFA-215ENST00000497139 LRP1Q07954 4544 aaKnown RBP6.23□□□□□ -1.41
VEGFA-215ENST00000497139 PP632Q6XCG6 107 aa6.22□□□□□ -1.41
VEGFA-215ENST00000497139 TNXBP22105 4242 aa6.21□□□□□ -1.42
VEGFA-215ENST00000497139 EPPK1P58107 5090 aaKnown RBP6.19□□□□□ -1.42
VEGFA-215ENST00000497139 FAT3Q8TDW7 4589 aa6.16□□□□□ -1.42
VEGFA-215ENST00000497139 KIAA1109Q2LD37 5005 aa6.16□□□□□ -1.42
VEGFA-215ENST00000497139 HSPG2P98160 4391 aa6.16□□□□□ -1.42
VEGFA-215ENST00000497139 KRTAP17-1Q9BYP8 105 aa6.14□□□□□ -1.43
VEGFA-215ENST00000497139 R4GN34 69 aa6.13□□□□□ -1.43
VEGFA-215ENST00000497139 LCE2DQ5TA82 110 aaPredicted RBP6.12□□□□□ -1.43
VEGFA-215ENST00000497139 Q5VSD8 79 aa6.12□□□□□ -1.43
VEGFA-215ENST00000497139 RYR1P21817 5038 aa6.11□□□□□ -1.43
VEGFA-215ENST00000497139 SEC61BP60468 96 aaKnown RBP6.11□□□□□ -1.43
VEGFA-215ENST00000497139 MYCBP2O75592 4640 aa6.07□□□□□ -1.44
VEGFA-215ENST00000497139 KRTAP4-5Q9BYR2 181 aa5.98□□□□□ -1.45
VEGFA-215ENST00000497139 MT1HL1P0DM35 61 aa5.97□□□□□ -1.45
VEGFA-215ENST00000497139 SPRR5A0A1B0GTR4 108 aa5.95□□□□□ -1.46
VEGFA-215ENST00000497139 KRTAP23-1A1A580 65 aa5.94□□□□□ -1.46
VEGFA-215ENST00000497139 CAMK2N1Q7Z7J9 78 aa5.9□□□□□ -1.47
VEGFA-215ENST00000497139 BIRC6Q9NR09 4857 aa5.88□□□□□ -1.47
VEGFA-215ENST00000497139 ABCA13Q86UQ4 5058 aa5.84□□□□□ -1.47
VEGFA-215ENST00000497139 LORP23490 312 aaPredicted RBP5.84□□□□□ -1.47
VEGFA-215ENST00000497139 PRO2289Q9P1D8 64 aa5.81□□□□□ -1.48
VEGFA-215ENST00000497139 HERC2O95714 4834 aa5.8□□□□□ -1.48
VEGFA-215ENST00000497139 TNP1P09430 55 aa5.77□□□□□ -1.49
VEGFA-215ENST00000497139 LPAP08519 4548 aa5.71□□□□□ -1.49
VEGFA-215ENST00000497139 INE1O15225 51 aa5.7□□□□□ -1.5
VEGFA-215ENST00000497139 LRP2P98164 4655 aa5.68□□□□□ -1.5
VEGFA-215ENST00000497139 PCLOQ9Y6V0 5065 aa5.64□□□□□ -1.51
VEGFA-215ENST00000497139 HERC1Q15751 4861 aa5.57□□□□□ -1.52
VEGFA-215ENST00000497139 LOC100996750A0A140TA64 210 aa5.54□□□□□ -1.52
VEGFA-215ENST00000497139 KRTAP4-6Q9BYQ5 205 aa5.54□□□□□ -1.52
VEGFA-215ENST00000497139 MUC17Q685J3 4493 aa5.52□□□□□ -1.53
VEGFA-215ENST00000497139 LCE2CQ5TA81 110 aa5.52□□□□□ -1.53
VEGFA-215ENST00000497139 KRTAP4-1Q9BYQ7 146 aa5.5□□□□□ -1.53
VEGFA-215ENST00000497139 KRTAP19-2Q3LHN2 52 aa5.5□□□□□ -1.53
VEGFA-215ENST00000497139 LCE2AQ5TA79 106 aaPredicted RBP5.48□□□□□ -1.53
VEGFA-215ENST00000497139 LCE2BO14633 110 aa5.47□□□□□ -1.53
VEGFA-215ENST00000497139 FLGP20930 4061 aaPredicted RBP5.46□□□□□ -1.54
VEGFA-215ENST00000497139 HMCN2Q8NDA2 5059 aa5.39□□□□□ -1.55
VEGFA-215ENST00000497139 MUC2Q02817 5179 aa5.32□□□□□ -1.56
VEGFA-215ENST00000497139 LCE3AQ5TA76 89 aa5.32□□□□□ -1.56
VEGFA-215ENST00000497139 KRTAP8-1Q8IUC2 63 aa5.28□□□□□ -1.56
VEGFA-215ENST00000497139 SPRR2GQ9BYE4 73 aa5.27□□□□□ -1.57
VEGFA-215ENST00000497139 UBR4Q5T4S7 5183 aa5.24□□□□□ -1.57
VEGFA-215ENST00000497139 RNF213Q63HN8 5207 aa5.19□□□□□ -1.58
VEGFA-215ENST00000497139 KRTAP19-1Q8IUB9 90 aa5.14□□□□□ -1.59
VEGFA-215ENST00000497139 FAT4Q6V0I7 4981 aa5.11□□□□□ -1.59
VEGFA-215ENST00000497139 KRTAP10-12P60413 245 aa5.09□□□□□ -1.59
VEGFA-215ENST00000497139 KRTAP12-3P60328 96 aa5.08□□□□□ -1.6
VEGFA-215ENST00000497139 KRTAP10-10P60014 251 aa4.99□□□□□ -1.61
VEGFA-215ENST00000497139 MT1HP80294 61 aa4.99□□□□□ -1.61
VEGFA-215ENST00000497139 M0R2T5 61 aa4.96□□□□□ -1.62
VEGFA-215ENST00000497139 KRTAP19-8Q3LI54 63 aa4.96□□□□□ -1.62
VEGFA-215ENST00000497139 KRTAP10-5P60370 271 aa4.95□□□□□ -1.62
VEGFA-215ENST00000497139 MT2AP02795 61 aa4.89□□□□□ -1.63
VEGFA-215ENST00000497139 MT1XP80297 61 aa4.89□□□□□ -1.63
VEGFA-215ENST00000497139 MT1FP04733 61 aa4.88□□□□□ -1.63
VEGFA-215ENST00000497139 KRTAP9-8Q9BYQ0 159 aa4.88□□□□□ -1.63
VEGFA-215ENST00000497139 LCE3CQ5T5A8 94 aa4.83□□□□□ -1.64
VEGFA-215ENST00000497139 MT1BP07438 61 aa4.81□□□□□ -1.64
VEGFA-215ENST00000497139 KRTAP2-3P0C7H8 128 aa4.75□□□□□ -1.65
VEGFA-215ENST00000497139 KRTAP10-7P60409 375 aaPredicted RBP4.75□□□□□ -1.65
VEGFA-215ENST00000497139 KRTAP4-8Q9BYQ9 185 aa4.75□□□□□ -1.65
VEGFA-215ENST00000497139 KRTAP2-4Q9BYR9 128 aa4.75□□□□□ -1.65
VEGFA-215ENST00000497139 KRTAP2-1Q9BYU5 128 aa4.75□□□□□ -1.65
VEGFA-215ENST00000497139 KRTAP9-3Q9BYQ3 159 aa4.67□□□□□ -1.66
VEGFA-215ENST00000497139 KRTAP19-5Q3LI72 72 aa4.66□□□□□ -1.66
VEGFA-215ENST00000497139 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.65□□□□□ -1.66
VEGFA-215ENST00000497139 KRTAP19-4Q3LI73 84 aa4.63□□□□□ -1.67
VEGFA-215ENST00000497139 KRTAP9-2Q9BYQ4 174 aa4.62□□□□□ -1.67
VEGFA-215ENST00000497139 KRTAP9-6A0A140TA67 174 aa4.61□□□□□ -1.67
VEGFA-215ENST00000497139 KRTAP9-6A8MVA2 160 aa4.61□□□□□ -1.67
VEGFA-215ENST00000497139 KRTAP4-8A0A0G2JLE6 195 aa4.53□□□□□ -1.68
VEGFA-215ENST00000497139 KRTAP5-3Q6L8H2 238 aa4.47□□□□□ -1.69
VEGFA-215ENST00000497139 USH2AO75445 5202 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms