RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 A0A1W2PNM2 257 aa2.97□□□□□ -1.93
CSMD3-208ENST00000497026 A0A1W2PNN7 141 aa2.97□□□□□ -1.93
CSMD3-208ENST00000497026 Q8N377 158 aa2.97□□□□□ -1.93
CSMD3-208ENST00000497026 DEFB105AQ8NG35 78 aa2.97□□□□□ -1.93
CSMD3-208ENST00000497026 TLX1NBP0CAT3 122 aa2.96□□□□□ -1.94
CSMD3-208ENST00000497026 XAGE1AQ9HD64 81 aa2.96□□□□□ -1.94
CSMD3-208ENST00000497026 HERC1Q15751 4861 aa2.96□□□□□ -1.94
CSMD3-208ENST00000497026 FAM168BA1KXE4 195 aa2.95□□□□□ -1.94
CSMD3-208ENST00000497026 Q6ZRX8 168 aa2.95□□□□□ -1.94
CSMD3-208ENST00000497026 KRTAP11-1Q8IUC1 163 aa2.95□□□□□ -1.94
CSMD3-208ENST00000497026 C7orf33Q8WU49 177 aa2.95□□□□□ -1.94
CSMD3-208ENST00000497026 MT1HL1P0DM35 61 aa2.94□□□□□ -1.94
CSMD3-208ENST00000497026 SPAG11AQ6PDA7 123 aa2.94□□□□□ -1.94
CSMD3-208ENST00000497026 RETNLBQ9BQ08 111 aa2.94□□□□□ -1.94
CSMD3-208ENST00000497026 TP53AIP1Q9HCN2 124 aa2.94□□□□□ -1.94
CSMD3-208ENST00000497026 SRRM2Q9UQ35 2752 aaKnown RBP2.94□□□□□ -1.94
CSMD3-208ENST00000497026 TNXBP22105 4242 aa2.93□□□□□ -1.94
CSMD3-208ENST00000497026 DMBT1Q9UGM3 2413 aaPredicted RBP2.93□□□□□ -1.94
CSMD3-208ENST00000497026 SPINK7P58062 85 aa2.93□□□□□ -1.94
CSMD3-208ENST00000497026 KRTAP12-2P59991 146 aa2.93□□□□□ -1.94
CSMD3-208ENST00000497026 PSORS1C2Q9UIG4 136 aa2.93□□□□□ -1.94
CSMD3-208ENST00000497026 RPL37AP8A6NKH3 93 aa2.92□□□□□ -1.94
CSMD3-208ENST00000497026 A8MWP4 228 aa2.92□□□□□ -1.94
CSMD3-208ENST00000497026 LCE3AQ5TA76 89 aa2.92□□□□□ -1.94
CSMD3-208ENST00000497026 SPINK6Q6UWN8 80 aa2.92□□□□□ -1.94
CSMD3-208ENST00000497026 H0Y9J4 135 aa2.9□□□□□ -1.95
CSMD3-208ENST00000497026 IGLV7-43P04211 117 aa2.9□□□□□ -1.95
CSMD3-208ENST00000497026 SPRR1AP35321 89 aa2.9□□□□□ -1.95
CSMD3-208ENST00000497026 PCOTHQ58A44 107 aa2.9□□□□□ -1.95
CSMD3-208ENST00000497026 HMCN2Q8NDA2 5059 aa2.89□□□□□ -1.95
CSMD3-208ENST00000497026 IGLV8-61A0A075B6I0 122 aa2.89□□□□□ -1.95
CSMD3-208ENST00000497026 A0A087WSZ3 146 aa2.89□□□□□ -1.95
CSMD3-208ENST00000497026 IGFL1Q6UW32 110 aa2.89□□□□□ -1.95
CSMD3-208ENST00000497026 KRTAP1-4P0C5Y4 121 aa2.88□□□□□ -1.95
CSMD3-208ENST00000497026 KRTAP10-8P60410 259 aa2.88□□□□□ -1.95
CSMD3-208ENST00000497026 DEFB116Q30KQ4 102 aa2.88□□□□□ -1.95
CSMD3-208ENST00000497026 IGLV1-50A0A075B6I6 118 aa2.87□□□□□ -1.95
CSMD3-208ENST00000497026 MMP24-AS1A0A0U1RRL7 71 aa2.87□□□□□ -1.95
CSMD3-208ENST00000497026 A0A1B0GU69 56 aa2.87□□□□□ -1.95
CSMD3-208ENST00000497026 KRTAP4-16G5E9R7 235 aaPredicted RBP2.87□□□□□ -1.95
CSMD3-208ENST00000497026 HRES1P13985 223 aa2.87□□□□□ -1.95
CSMD3-208ENST00000497026 REG3GQ6UW15 175 aa2.87□□□□□ -1.95
CSMD3-208ENST00000497026 ACYP2P14621 99 aa2.86□□□□□ -1.95
CSMD3-208ENST00000497026 KRTAP13-1Q8IUC0 172 aa2.86□□□□□ -1.95
CSMD3-208ENST00000497026 ZNF706Q9Y5V0 76 aaPredicted RBP2.86□□□□□ -1.95
CSMD3-208ENST00000497026 UQCR11O14957 56 aa2.85□□□□□ -1.95
CSMD3-208ENST00000497026 ZNF861PO60384 105 aa2.85□□□□□ -1.95
CSMD3-208ENST00000497026 MIR22HGQ0VDD5 57 aa2.85□□□□□ -1.95
CSMD3-208ENST00000497026 SPATA8Q6RVD6 105 aa2.85□□□□□ -1.95
CSMD3-208ENST00000497026 CSAG1Q6PB30 78 aa2.85□□□□□ -1.95
CSMD3-208ENST00000497026 ADM2Q7Z4H4 148 aa2.85□□□□□ -1.95
CSMD3-208ENST00000497026 KRTAP13-3Q3SY46 172 aa2.84□□□□□ -1.96
CSMD3-208ENST00000497026 LINC00472Q9H8W2 130 aa2.84□□□□□ -1.96
CSMD3-208ENST00000497026 UBR4Q5T4S7 5183 aa2.83□□□□□ -1.96
CSMD3-208ENST00000497026 PRLHP81277 87 aa2.83□□□□□ -1.96
CSMD3-208ENST00000497026 C8orf17Q9NRJ1 99 aa2.83□□□□□ -1.96
CSMD3-208ENST00000497026 IGHV6-1A0A0B4J1U7 121 aa2.81□□□□□ -1.96
CSMD3-208ENST00000497026 SPRR1BP22528 89 aa2.81□□□□□ -1.96
CSMD3-208ENST00000497026 KRTAP13-2Q52LG2 175 aa2.81□□□□□ -1.96
CSMD3-208ENST00000497026 MRPL34Q9BQ48 92 aaKnown RBP2.81□□□□□ -1.96
CSMD3-208ENST00000497026 ANAPC11Q9NYG5 84 aa2.81□□□□□ -1.96
CSMD3-208ENST00000497026 LPAP08519 4548 aa2.81□□□□□ -1.96
CSMD3-208ENST00000497026 LRP2P98164 4655 aa2.8□□□□□ -1.96
CSMD3-208ENST00000497026 A0A1B0GVX0 72 aa2.79□□□□□ -1.96
CSMD3-208ENST00000497026 KRTAP5-8O75690 187 aa2.79□□□□□ -1.96
CSMD3-208ENST00000497026 DMAC1Q96GE9 116 aa2.79□□□□□ -1.96
CSMD3-208ENST00000497026 ROMO1P60602 79 aa2.78□□□□□ -1.96
CSMD3-208ENST00000497026 KRTAP25-1Q3LHN0 102 aa2.77□□□□□ -1.97
CSMD3-208ENST00000497026 TYMSOSQ8TAI1 123 aa2.77□□□□□ -1.97
CSMD3-208ENST00000497026 A0A0G2JQZ4 141 aa2.76□□□□□ -1.97
CSMD3-208ENST00000497026 LINC00483Q53H64 154 aa2.76□□□□□ -1.97
CSMD3-208ENST00000497026 LINC00304Q8N9R0 145 aa2.75□□□□□ -1.97
CSMD3-208ENST00000497026 Q96NJ1 140 aa2.74□□□□□ -1.97
CSMD3-208ENST00000497026 K7ERS5 55 aa2.73□□□□□ -1.97
CSMD3-208ENST00000497026 RNF213Q63HN8 5207 aa2.71□□□□□ -1.97
CSMD3-208ENST00000497026 A8MUU9 505 aa2.7□□□□□ -1.98
CSMD3-208ENST00000497026 MUC17Q685J3 4493 aa2.69□□□□□ -1.98
CSMD3-208ENST00000497026 SPINK1P00995 79 aa2.69□□□□□ -1.98
CSMD3-208ENST00000497026 RPS29P62273 56 aaKnown RBP2.69□□□□□ -1.98
CSMD3-208ENST00000497026 TPRXLQ17RH7 258 aa2.69□□□□□ -1.98
CSMD3-208ENST00000497026 Q5W150 140 aa2.69□□□□□ -1.98
CSMD3-208ENST00000497026 SSBP3-AS1Q7Z2R9 100 aa2.69□□□□□ -1.98
CSMD3-208ENST00000497026 MUC2Q02817 5179 aa2.68□□□□□ -1.98
CSMD3-208ENST00000497026 SPINT4Q6UDR6 99 aa2.67□□□□□ -1.98
CSMD3-208ENST00000497026 KRTAP5-5Q701N2 237 aaPredicted RBP2.66□□□□□ -1.98
CSMD3-208ENST00000497026 P0C880 135 aa2.63□□□□□ -1.99
CSMD3-208ENST00000497026 LCE1CQ5T751 118 aa2.63□□□□□ -1.99
CSMD3-208ENST00000497026 LCE1BQ5T7P3 118 aa2.63□□□□□ -1.99
CSMD3-208ENST00000497026 H0YAA0 97 aa2.62□□□□□ -1.99
CSMD3-208ENST00000497026 C20orf166-AS1Q96NR2 134 aa2.62□□□□□ -1.99
CSMD3-208ENST00000497026 KRTAP4-1Q9BYQ7 146 aa2.62□□□□□ -1.99
CSMD3-208ENST00000497026 FAT4Q6V0I7 4981 aa2.62□□□□□ -1.99
CSMD3-208ENST00000497026 A0A1B0GU33 70 aa2.61□□□□□ -1.99
CSMD3-208ENST00000497026 H1FX-AS1Q4G0G2 97 aa2.61□□□□□ -1.99
CSMD3-208ENST00000497026 C9orf92A6NGG3 77 aa2.59□□□□□ -2
CSMD3-208ENST00000497026 KRTAP19-2Q3LHN2 52 aa2.56□□□□□ -2
CSMD3-208ENST00000497026 LUZP6Q538Z0 58 aa2.56□□□□□ -2
CSMD3-208ENST00000497026 RPL37P61927 97 aaKnown RBP2.55□□□□□ -2
CSMD3-208ENST00000497026 COX6B2Q6YFQ2 88 aa2.54□□□□□ -2
CSMD3-208ENST00000497026 CRIPTQ9P021 101 aa2.53□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms