RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 DNAH1Q9P2D7 4330 aa0.22□□□□□ -2.37
VPS50-219ENST00000495039 DYNC1H1Q14204 4646 aaKnown RBP0.22□□□□□ -2.38
VPS50-219ENST00000495039 FRYLO94915 3013 aa0.21□□□□□ -2.38
VPS50-219ENST00000495039 BSNQ9UPA5 3926 aa0.21□□□□□ -2.38
VPS50-219ENST00000495039 DNAH11Q96DT5 4516 aa0.21□□□□□ -2.38
VPS50-219ENST00000495039 LOC400499M0QZD8 3231 aa0.21□□□□□ -2.38
VPS50-219ENST00000495039 ABCA12Q86UK0 2595 aa0.21□□□□□ -2.38
VPS50-219ENST00000495039 VPS13DQ5THJ4 4388 aa0.21□□□□□ -2.38
VPS50-219ENST00000495039 PLECQ15149 4684 aaKnown RBP0.21□□□□□ -2.38
VPS50-219ENST00000495039 TENM4Q6N022 2769 aa0.21□□□□□ -2.38
VPS50-219ENST00000495039 TENM2Q9NT68 2774 aa0.21□□□□□ -2.38
VPS50-219ENST00000495039 IGF2RP11717 2491 aa0.21□□□□□ -2.38
VPS50-219ENST00000495039 DNAH8Q96JB1 4490 aa0.21□□□□□ -2.38
VPS50-219ENST00000495039 RYR1P21817 5038 aa0.21□□□□□ -2.38
VPS50-219ENST00000495039 MT1GP13640 62 aa0.21□□□□□ -2.38
VPS50-219ENST00000495039 KRTAP19-5Q3LI72 72 aa0.21□□□□□ -2.38
VPS50-219ENST00000495039 SPRR2FQ96RM1 72 aa0.21□□□□□ -2.38
VPS50-219ENST00000495039 BIRC6Q9NR09 4857 aa0.21□□□□□ -2.38
VPS50-219ENST00000495039 FAT1Q14517 4588 aa0.21□□□□□ -2.38
VPS50-219ENST00000495039 DMDP11532 3685 aa0.21□□□□□ -2.38
VPS50-219ENST00000495039 SPENQ96T58 3664 aaKnown RBP0.21□□□□□ -2.38
VPS50-219ENST00000495039 PDZD2O15018 2839 aa0.21□□□□□ -2.38
VPS50-219ENST00000495039 COL12A1Q99715 3063 aa0.21□□□□□ -2.38
VPS50-219ENST00000495039 LRRK2Q5S007 2527 aa0.21□□□□□ -2.38
VPS50-219ENST00000495039 ZFYVE26Q68DK2 2539 aa0.21□□□□□ -2.38
VPS50-219ENST00000495039 HSPG2P98160 4391 aa0.21□□□□□ -2.38
VPS50-219ENST00000495039 FRYQ5TBA9 3013 aa0.21□□□□□ -2.38
VPS50-219ENST00000495039 DMXL2Q8TDJ6 3036 aa0.21□□□□□ -2.38
VPS50-219ENST00000495039 FAT2Q9NYQ8 4349 aa0.21□□□□□ -2.38
VPS50-219ENST00000495039 FAT3Q8TDW7 4589 aa0.21□□□□□ -2.38
VPS50-219ENST00000495039 PKD1L2Q7Z442 2459 aa0.21□□□□□ -2.38
VPS50-219ENST00000495039 ZZEF1O43149 2961 aa0.21□□□□□ -2.38
VPS50-219ENST00000495039 DMBT1Q9UGM3 2413 aaPredicted RBP0.21□□□□□ -2.38
VPS50-219ENST00000495039 ITPR3Q14573 2671 aa0.2□□□□□ -2.38
VPS50-219ENST00000495039 LAMA5O15230 3695 aa0.2□□□□□ -2.38
VPS50-219ENST00000495039 SMG1Q96Q15 3661 aaKnown RBP0.2□□□□□ -2.38
VPS50-219ENST00000495039 CUBNO60494 3623 aa0.2□□□□□ -2.38
VPS50-219ENST00000495039 HYDINQ4G0P3 5121 aa0.2□□□□□ -2.38
VPS50-219ENST00000495039 ADGRG4Q8IZF6 3080 aa0.2□□□□□ -2.38
VPS50-219ENST00000495039 USP9YO00507 2555 aaPredicted RBP0.2□□□□□ -2.38
VPS50-219ENST00000495039 POLQO75417 2590 aa0.2□□□□□ -2.38
VPS50-219ENST00000495039 CHD8Q9HCK8 2581 aa0.2□□□□□ -2.38
VPS50-219ENST00000495039 DNHD1Q96M86 4753 aa0.2□□□□□ -2.38
VPS50-219ENST00000495039 MTORP42345 2549 aa0.2□□□□□ -2.38
VPS50-219ENST00000495039 CSMD2Q7Z408 3487 aa0.2□□□□□ -2.38
VPS50-219ENST00000495039 RYR3Q15413 4870 aa0.2□□□□□ -2.38
VPS50-219ENST00000495039 APOBP04114 4563 aaKnown RBP0.2□□□□□ -2.38
VPS50-219ENST00000495039 MT1EP04732 61 aa0.2□□□□□ -2.38
VPS50-219ENST00000495039 MT1BP07438 61 aa0.2□□□□□ -2.38
VPS50-219ENST00000495039 SPRR2EP22531 72 aa0.2□□□□□ -2.38
VPS50-219ENST00000495039 SPRR2DP22532 72 aa0.2□□□□□ -2.38
VPS50-219ENST00000495039 SPRR2BP35325 72 aa0.2□□□□□ -2.38
VPS50-219ENST00000495039 SPRR2AP35326 72 aa0.2□□□□□ -2.38
VPS50-219ENST00000495039 MT1XP80297 61 aa0.2□□□□□ -2.38
VPS50-219ENST00000495039 KRTAP19-2Q3LHN2 52 aa0.2□□□□□ -2.38
VPS50-219ENST00000495039 KRTAP19-6Q3LI70 58 aa0.2□□□□□ -2.38
VPS50-219ENST00000495039 MT1LQ93083 61 aa0.2□□□□□ -2.38
VPS50-219ENST00000495039 ATMQ13315 3056 aa0.2□□□□□ -2.38
VPS50-219ENST00000495039 BOD1L1Q8NFC6 3051 aa0.2□□□□□ -2.38
VPS50-219ENST00000495039 AKAP13Q12802 2813 aa0.2□□□□□ -2.38
VPS50-219ENST00000495039 ZFHX3Q15911 3703 aa0.2□□□□□ -2.38
VPS50-219ENST00000495039 MYO18BQ8IUG5 2567 aa0.2□□□□□ -2.38
VPS50-219ENST00000495039 TLN1Q9Y490 2541 aaKnown RBP0.2□□□□□ -2.38
VPS50-219ENST00000495039 MUC3AQ02505 3323 aa0.2□□□□□ -2.38
VPS50-219ENST00000495039 RYR2Q92736 4967 aa0.19□□□□□ -2.38
VPS50-219ENST00000495039 DYNC2H1Q8NCM8 4307 aaKnown RBP0.19□□□□□ -2.38
VPS50-219ENST00000495039 MUC17Q685J3 4493 aa0.19□□□□□ -2.38
VPS50-219ENST00000495039 PCLOQ9Y6V0 5065 aa0.19□□□□□ -2.38
VPS50-219ENST00000495039 MYCBP2O75592 4640 aa0.19□□□□□ -2.38
VPS50-219ENST00000495039 TEX15Q9BXT5 2789 aa0.19□□□□□ -2.38
VPS50-219ENST00000495039 CRYBG3Q68DQ2 2970 aa0.19□□□□□ -2.38
VPS50-219ENST00000495039 MGAM2Q2M2H8 2515 aa0.19□□□□□ -2.38
VPS50-219ENST00000495039 TLN2Q9Y4G6 2542 aa0.19□□□□□ -2.38
VPS50-219ENST00000495039 HIVEP1P15822 2718 aa0.19□□□□□ -2.38
VPS50-219ENST00000495039 TACC2O95359 2948 aa0.19□□□□□ -2.38
VPS50-219ENST00000495039 AKAP9Q99996 3911 aa0.19□□□□□ -2.38
VPS50-219ENST00000495039 TRRAPQ9Y4A5 3859 aa0.19□□□□□ -2.38
VPS50-219ENST00000495039 HECTD1Q9ULT8 2610 aa0.19□□□□□ -2.38
VPS50-219ENST00000495039 LPAP08519 4548 aa0.19□□□□□ -2.38
VPS50-219ENST00000495039 KALRNO60229 2985 aa0.19□□□□□ -2.38
VPS50-219ENST00000495039 CSMD3Q7Z407 3707 aa0.19□□□□□ -2.38
VPS50-219ENST00000495039 TRANK1O15050 2925 aa0.19□□□□□ -2.38
VPS50-219ENST00000495039 PRRC2CQ9Y520 2896 aaKnown RBP0.19□□□□□ -2.38
VPS50-219ENST00000495039 STARD9Q9P2P6 4700 aa0.19□□□□□ -2.38
VPS50-219ENST00000495039 ANKRD11Q6UB99 2663 aaPredicted RBP0.19□□□□□ -2.38
VPS50-219ENST00000495039 PKD1P98161 4303 aa0.19□□□□□ -2.38
VPS50-219ENST00000495039 DNAH3Q8TD57 4116 aa0.19□□□□□ -2.38
VPS50-219ENST00000495039 MAP1AP78559 2803 aaPredicted RBP0.19□□□□□ -2.38
VPS50-219ENST00000495039 HERC2O95714 4834 aa0.18□□□□□ -2.38
VPS50-219ENST00000495039 ANKRD17O75179 2603 aaKnown RBP0.18□□□□□ -2.38
VPS50-219ENST00000495039 FLNAP21333 2647 aaKnown RBP0.18□□□□□ -2.38
VPS50-219ENST00000495039 NBEAL2Q6ZNJ1 2754 aa0.18□□□□□ -2.38
VPS50-219ENST00000495039 KMT2AQ03164 3969 aa0.18□□□□□ -2.38
VPS50-219ENST00000495039 PRKDCP78527 4128 aaKnown RBP0.18□□□□□ -2.38
VPS50-219ENST00000495039 CELSR1Q9NYQ6 3014 aa0.18□□□□□ -2.38
VPS50-219ENST00000495039 ABCA13Q86UQ4 5058 aa0.18□□□□□ -2.38
VPS50-219ENST00000495039 ALMS1Q8TCU4 4167 aa0.18□□□□□ -2.38
VPS50-219ENST00000495039 MT1MQ8N339 61 aa0.18□□□□□ -2.38
VPS50-219ENST00000495039 SYNE2Q8WXH0 6885 aaKnown RBP0.18□□□□□ -2.38
VPS50-219ENST00000495039 UTP20O75691 2785 aaKnown RBP0.18□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 164.8 ms