RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 NSD1Q96L73 2696 aaPredicted RBP1.22□□□□□ -2.21
BRCA1-220ENST00000492859 ANK2Q01484 3957 aa1.22□□□□□ -2.21
BRCA1-220ENST00000492859 MXRA5Q9NR99 2828 aa1.22□□□□□ -2.21
BRCA1-220ENST00000492859 USP9XQ93008 2570 aaPredicted RBP1.22□□□□□ -2.21
BRCA1-220ENST00000492859 WDFY4Q6ZS81 3184 aa1.22□□□□□ -2.21
BRCA1-220ENST00000492859 ANKRD11Q6UB99 2663 aaPredicted RBP1.22□□□□□ -2.21
BRCA1-220ENST00000492859 CD52P31358 61 aa1.21□□□□□ -2.22
BRCA1-220ENST00000492859 KRTAP8-1Q8IUC2 63 aa1.21□□□□□ -2.22
BRCA1-220ENST00000492859 LAMA5O15230 3695 aa1.21□□□□□ -2.22
BRCA1-220ENST00000492859 MUC3AQ02505 3323 aa1.21□□□□□ -2.22
BRCA1-220ENST00000492859 PRM1P04553 51 aa1.21□□□□□ -2.22
BRCA1-220ENST00000492859 DMDP11532 3685 aa1.2□□□□□ -2.22
BRCA1-220ENST00000492859 CSMD1Q96PZ7 3565 aa1.2□□□□□ -2.22
BRCA1-220ENST00000492859 SPTBN5Q9NRC6 3674 aaKnown RBP1.2□□□□□ -2.22
BRCA1-220ENST00000492859 ZFYVE26Q68DK2 2539 aa1.2□□□□□ -2.22
BRCA1-220ENST00000492859 TGP01266 2768 aa1.2□□□□□ -2.22
BRCA1-220ENST00000492859 ACACBO00763 2458 aa1.2□□□□□ -2.22
BRCA1-220ENST00000492859 SMG1Q96Q15 3661 aaKnown RBP1.19□□□□□ -2.22
BRCA1-220ENST00000492859 ITPR2Q14571 2701 aa1.19□□□□□ -2.22
BRCA1-220ENST00000492859 TEP1Q99973 2627 aaKnown RBP1.19□□□□□ -2.22
BRCA1-220ENST00000492859 XIRP2A4UGR9 3374 aa1.18□□□□□ -2.22
BRCA1-220ENST00000492859 DEFB133Q30KQ1 61 aa1.18□□□□□ -2.22
BRCA1-220ENST00000492859 DNAH3Q8TD57 4116 aa1.18□□□□□ -2.22
BRCA1-220ENST00000492859 TLN2Q9Y4G6 2542 aa1.18□□□□□ -2.22
BRCA1-220ENST00000492859 LAMA3Q16787 3333 aa1.17□□□□□ -2.22
BRCA1-220ENST00000492859 PRKDCP78527 4128 aaKnown RBP1.17□□□□□ -2.22
BRCA1-220ENST00000492859 LAMA1P25391 3075 aa1.17□□□□□ -2.22
BRCA1-220ENST00000492859 HRNRQ86YZ3 2850 aaPredicted RBP1.17□□□□□ -2.22
BRCA1-220ENST00000492859 UTRNP46939 3433 aa1.17□□□□□ -2.22
BRCA1-220ENST00000492859 TENM3Q9P273 2699 aa1.17□□□□□ -2.22
BRCA1-220ENST00000492859 CUBNO60494 3623 aa1.16□□□□□ -2.22
BRCA1-220ENST00000492859 UNC79Q9P2D8 2635 aa1.16□□□□□ -2.22
BRCA1-220ENST00000492859 DYNC2H1Q8NCM8 4307 aaKnown RBP1.16□□□□□ -2.22
BRCA1-220ENST00000492859 CENPEQ02224 2701 aa1.15□□□□□ -2.23
BRCA1-220ENST00000492859 MYO18BQ8IUG5 2567 aa1.15□□□□□ -2.23
BRCA1-220ENST00000492859 TEX15Q9BXT5 2789 aa1.15□□□□□ -2.23
BRCA1-220ENST00000492859 FLNAP21333 2647 aaKnown RBP1.15□□□□□ -2.23
BRCA1-220ENST00000492859 ADGRG4Q8IZF6 3080 aa1.14□□□□□ -2.23
BRCA1-220ENST00000492859 RPS29P62273 56 aaKnown RBP1.14□□□□□ -2.23
BRCA1-220ENST00000492859 FAT2Q9NYQ8 4349 aa1.14□□□□□ -2.23
BRCA1-220ENST00000492859 DOPEY1Q5JWR5 2465 aa1.14□□□□□ -2.23
BRCA1-220ENST00000492859 NOTCH1P46531 2555 aa1.13□□□□□ -2.23
BRCA1-220ENST00000492859 HTN3P15516 51 aa1.13□□□□□ -2.23
BRCA1-220ENST00000492859 PKHD1L1Q86WI1 4243 aa1.13□□□□□ -2.23
BRCA1-220ENST00000492859 DNAH7Q8WXX0 4024 aa1.12□□□□□ -2.23
BRCA1-220ENST00000492859 NBEAL1Q6ZS30 2694 aa1.12□□□□□ -2.23
BRCA1-220ENST00000492859 FRAS1Q86XX4 4008 aa1.12□□□□□ -2.23
BRCA1-220ENST00000492859 LOC400499M0QZD8 3231 aa1.12□□□□□ -2.23
BRCA1-220ENST00000492859 CSMD2Q7Z408 3487 aa1.12□□□□□ -2.23
BRCA1-220ENST00000492859 FLNBO75369 2602 aaKnown RBP1.11□□□□□ -2.23
BRCA1-220ENST00000492859 EP400Q96L91 3159 aa1.11□□□□□ -2.23
BRCA1-220ENST00000492859 SVEP1Q4LDE5 3571 aa1.11□□□□□ -2.23
BRCA1-220ENST00000492859 U3KQA8 63 aa1.11□□□□□ -2.23
BRCA1-220ENST00000492859 SPTAN1Q13813 2472 aaKnown RBP1.11□□□□□ -2.23
BRCA1-220ENST00000492859 FLGP20930 4061 aaPredicted RBP1.1□□□□□ -2.23
BRCA1-220ENST00000492859 FASNP49327 2511 aaKnown RBP1.1□□□□□ -2.23
BRCA1-220ENST00000492859 USP34Q70CQ2 3546 aa1.1□□□□□ -2.23
BRCA1-220ENST00000492859 DNAH2Q9P225 4427 aa1.09□□□□□ -2.23
BRCA1-220ENST00000492859 KRTAP5-7Q6L8G8 165 aa1.09□□□□□ -2.23
BRCA1-220ENST00000492859 ASPMQ8IZT6 3477 aa1.09□□□□□ -2.23
BRCA1-220ENST00000492859 LAMA2P24043 3122 aaKnown RBP1.09□□□□□ -2.23
BRCA1-220ENST00000492859 SMR3BP02814 79 aaPredicted RBP1.08□□□□□ -2.24
BRCA1-220ENST00000492859 MUC19Q7Z5P9 8384 aa1.08□□□□□ -2.24
BRCA1-220ENST00000492859 TLN1Q9Y490 2541 aaKnown RBP1.08□□□□□ -2.24
BRCA1-220ENST00000492859 HECTD4Q9Y4D8 3996 aa1.07□□□□□ -2.24
BRCA1-220ENST00000492859 ANK3Q12955 4377 aaKnown RBP1.07□□□□□ -2.24
BRCA1-220ENST00000492859 DEFB4AO15263 64 aa1.07□□□□□ -2.24
BRCA1-220ENST00000492859 HSPG2P98160 4391 aa1.07□□□□□ -2.24
BRCA1-220ENST00000492859 STAB2Q8WWQ8 2551 aa1.07□□□□□ -2.24
BRCA1-220ENST00000492859 KRTAP19-3Q7Z4W3 81 aa1.06□□□□□ -2.24
BRCA1-220ENST00000492859 CENPFP49454 3210 aa1.06□□□□□ -2.24
BRCA1-220ENST00000492859 DNAH10Q8IVF4 4471 aa1.05□□□□□ -2.24
BRCA1-220ENST00000492859 MGAM2Q2M2H8 2515 aa1.05□□□□□ -2.24
BRCA1-220ENST00000492859 CEP295Q9C0D2 2601 aa1.05□□□□□ -2.24
BRCA1-220ENST00000492859 KRTAP19-5Q3LI72 72 aa1.04□□□□□ -2.24
BRCA1-220ENST00000492859 FAT3Q8TDW7 4589 aa1.03□□□□□ -2.24
BRCA1-220ENST00000492859 VCANP13611 3396 aa1.03□□□□□ -2.24
BRCA1-220ENST00000492859 MAST4O15021 2626 aa1.02□□□□□ -2.25
BRCA1-220ENST00000492859 PKD1P98161 4303 aa1.01□□□□□ -2.25
BRCA1-220ENST00000492859 PCNTO95613 3336 aa1.01□□□□□ -2.25
BRCA1-220ENST00000492859 CMYA5Q8N3K9 4069 aa1□□□□□ -2.25
BRCA1-220ENST00000492859 TRRAPQ9Y4A5 3859 aa1□□□□□ -2.25
BRCA1-220ENST00000492859 HUWE1Q7Z6Z7 4374 aaKnown RBP1□□□□□ -2.25
BRCA1-220ENST00000492859 LRP1Q07954 4544 aaKnown RBP1□□□□□ -2.25
BRCA1-220ENST00000492859 DNAH6Q9C0G6 4158 aa0.99□□□□□ -2.25
BRCA1-220ENST00000492859 UNC80Q8N2C7 3258 aa0.99□□□□□ -2.25
BRCA1-220ENST00000492859 DNAH1Q9P2D7 4330 aa0.99□□□□□ -2.25
BRCA1-220ENST00000492859 IGSF10Q6WRI0 2623 aa0.99□□□□□ -2.25
BRCA1-220ENST00000492859 MYO15AQ9UKN7 3530 aa0.99□□□□□ -2.25
BRCA1-220ENST00000492859 MT1AP04731 61 aa0.98□□□□□ -2.25
BRCA1-220ENST00000492859 DNAH9Q9NYC9 4486 aa0.97□□□□□ -2.25
BRCA1-220ENST00000492859 EYSQ5T1H1 3165 aa0.97□□□□□ -2.25
BRCA1-220ENST00000492859 SPRR2DP22532 72 aa0.96□□□□□ -2.26
BRCA1-220ENST00000492859 VPS13CQ709C8 3753 aa0.96□□□□□ -2.26
BRCA1-220ENST00000492859 KRTAP6-2Q3LI66 62 aa0.96□□□□□ -2.26
BRCA1-220ENST00000492859 PLECQ15149 4684 aaKnown RBP0.95□□□□□ -2.26
BRCA1-220ENST00000492859 APOBP04114 4563 aaKnown RBP0.95□□□□□ -2.26
BRCA1-220ENST00000492859 TENM1Q9UKZ4 2725 aa0.95□□□□□ -2.26
BRCA1-220ENST00000492859 KRTAP21-2Q3LI59 83 aa0.95□□□□□ -2.26
BRCA1-220ENST00000492859 BRCA2P51587 3418 aa0.94□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms