RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 KRTAP16-1A8MUX0 517 aa3.32□□□□□ -1.88
VPS41-214ENST00000490924 SPINK1P00995 79 aa3.32□□□□□ -1.88
VPS41-214ENST00000490924 SPTSSBQ8NFR3 76 aa3.32□□□□□ -1.88
VPS41-214ENST00000490924 CIRBP-AS1Q8TBR5 109 aa3.32□□□□□ -1.88
VPS41-214ENST00000490924 STARD9Q9P2P6 4700 aa3.31□□□□□ -1.88
VPS41-214ENST00000490924 A8MU10 97 aa3.3□□□□□ -1.88
VPS41-214ENST00000490924 UQCR11O14957 56 aa3.3□□□□□ -1.88
VPS41-214ENST00000490924 SPINK7P58062 85 aa3.3□□□□□ -1.88
VPS41-214ENST00000490924 SPINK6Q6UWN8 80 aa3.3□□□□□ -1.88
VPS41-214ENST00000490924 ANAPC11Q9NYG5 84 aa3.3□□□□□ -1.88
VPS41-214ENST00000490924 A0A1B0GU69 56 aa3.29□□□□□ -1.88
VPS41-214ENST00000490924 KRTAP13-2Q52LG2 175 aa3.29□□□□□ -1.88
VPS41-214ENST00000490924 ALMS1Q8TCU4 4167 aa3.28□□□□□ -1.88
VPS41-214ENST00000490924 KRTAP1-4P0C5Y4 121 aa3.28□□□□□ -1.88
VPS41-214ENST00000490924 RBM12B-AS1Q9P1G2 102 aa3.28□□□□□ -1.88
VPS41-214ENST00000490924 FRAS1Q86XX4 4008 aa3.28□□□□□ -1.88
VPS41-214ENST00000490924 KRTAP5-9P26371 169 aa3.27□□□□□ -1.89
VPS41-214ENST00000490924 DNAH11Q96DT5 4516 aa3.26□□□□□ -1.89
VPS41-214ENST00000490924 KRTAP5-4Q6L8H1 288 aa3.26□□□□□ -1.89
VPS41-214ENST00000490924 KIAA1109Q2LD37 5005 aa3.26□□□□□ -1.89
VPS41-214ENST00000490924 DNAH5Q8TE73 4624 aa3.24□□□□□ -1.89
VPS41-214ENST00000490924 ABCA13Q86UQ4 5058 aa3.24□□□□□ -1.89
VPS41-214ENST00000490924 KMT2AQ03164 3969 aa3.24□□□□□ -1.89
VPS41-214ENST00000490924 MIR22HGQ0VDD5 57 aa3.24□□□□□ -1.89
VPS41-214ENST00000490924 HERC1Q15751 4861 aa3.24□□□□□ -1.89
VPS41-214ENST00000490924 KRTAP9-6A8MVA2 160 aa3.23□□□□□ -1.89
VPS41-214ENST00000490924 UBR4Q5T4S7 5183 aa3.23□□□□□ -1.89
VPS41-214ENST00000490924 LY6G6CO95867 125 aa3.22□□□□□ -1.89
VPS41-214ENST00000490924 TYMSOSQ8TAI1 123 aa3.22□□□□□ -1.89
VPS41-214ENST00000490924 C20orf166-AS1Q96NR2 134 aa3.22□□□□□ -1.89
VPS41-214ENST00000490924 A8MUU9 505 aa3.21□□□□□ -1.9
VPS41-214ENST00000490924 KRTAP10-1P60331 282 aa3.21□□□□□ -1.9
VPS41-214ENST00000490924 KRTAP4-4Q9BYR3 166 aa3.21□□□□□ -1.9
VPS41-214ENST00000490924 LRP1BQ9NZR2 4599 aa3.2□□□□□ -1.9
VPS41-214ENST00000490924 LINC00304Q8N9R0 145 aa3.2□□□□□ -1.9
VPS41-214ENST00000490924 RETNLBQ9BQ08 111 aa3.2□□□□□ -1.9
VPS41-214ENST00000490924 FAT2Q9NYQ8 4349 aa3.18□□□□□ -1.9
VPS41-214ENST00000490924 PKD1P98161 4303 aa3.17□□□□□ -1.9
VPS41-214ENST00000490924 VPS13BQ7Z7G8 4022 aa3.16□□□□□ -1.9
VPS41-214ENST00000490924 DYNC1H1Q14204 4646 aaKnown RBP3.15□□□□□ -1.9
VPS41-214ENST00000490924 KRTAP10-12P60413 245 aa3.15□□□□□ -1.91
VPS41-214ENST00000490924 LINC01554Q52M75 96 aa3.15□□□□□ -1.91
VPS41-214ENST00000490924 HSPG2P98160 4391 aa3.13□□□□□ -1.91
VPS41-214ENST00000490924 PKHD1P08F94 4074 aa3.13□□□□□ -1.91
VPS41-214ENST00000490924 PKHD1L1Q86WI1 4243 aa3.12□□□□□ -1.91
VPS41-214ENST00000490924 A0A1B0GU33 70 aa3.11□□□□□ -1.91
VPS41-214ENST00000490924 COX6B2Q6YFQ2 88 aa3.11□□□□□ -1.91
VPS41-214ENST00000490924 K7ERS5 55 aa3.1□□□□□ -1.91
VPS41-214ENST00000490924 KRTAP10-4P60372 401 aaPredicted RBP3.1□□□□□ -1.91
VPS41-214ENST00000490924 H1FX-AS1Q4G0G2 97 aa3.1□□□□□ -1.91
VPS41-214ENST00000490924 H0YAA0 97 aa3.09□□□□□ -1.91
VPS41-214ENST00000490924 A0A1B0GVY2 172 aa3.08□□□□□ -1.92
VPS41-214ENST00000490924 PRAC1Q96KF2 57 aa3.08□□□□□ -1.92
VPS41-214ENST00000490924 APOBP04114 4563 aaKnown RBP3.08□□□□□ -1.92
VPS41-214ENST00000490924 KRTAP25-1Q3LHN0 102 aa3.05□□□□□ -1.92
VPS41-214ENST00000490924 CSAG1Q6PB30 78 aa3.05□□□□□ -1.92
VPS41-214ENST00000490924 ADM2Q7Z4H4 148 aa3.05□□□□□ -1.92
VPS41-214ENST00000490924 A0A0A0MQY5 61 aa3.03□□□□□ -1.92
VPS41-214ENST00000490924 MYCBP2O75592 4640 aa3.01□□□□□ -1.93
VPS41-214ENST00000490924 C9orf92A6NGG3 77 aa3.01□□□□□ -1.93
VPS41-214ENST00000490924 KRTAP10-8P60410 259 aa3.01□□□□□ -1.93
VPS41-214ENST00000490924 RPL37P61927 97 aaKnown RBP3.01□□□□□ -1.93
VPS41-214ENST00000490924 FLG2Q5D862 2391 aaPredicted RBP3□□□□□ -1.93
VPS41-214ENST00000490924 LCE1FQ5T754 118 aa3□□□□□ -1.93
VPS41-214ENST00000490924 HMCN2Q8NDA2 5059 aa2.99□□□□□ -1.93
VPS41-214ENST00000490924 DMBT1Q9UGM3 2413 aaPredicted RBP2.99□□□□□ -1.93
VPS41-214ENST00000490924 ROMO1P60602 79 aa2.99□□□□□ -1.93
VPS41-214ENST00000490924 FAT1Q14517 4588 aa2.97□□□□□ -1.93
VPS41-214ENST00000490924 TNXBP22105 4242 aa2.97□□□□□ -1.93
VPS41-214ENST00000490924 SMR3BP02814 79 aaPredicted RBP2.96□□□□□ -1.94
VPS41-214ENST00000490924 S4R3F8 94 aa2.96□□□□□ -1.94
VPS41-214ENST00000490924 FAT3Q8TDW7 4589 aa2.96□□□□□ -1.94
VPS41-214ENST00000490924 M0QZ58 72 aa2.94□□□□□ -1.94
VPS41-214ENST00000490924 OBSCNQ5VST9 7968 aa2.94□□□□□ -1.94
VPS41-214ENST00000490924 LRP1Q07954 4544 aaKnown RBP2.92□□□□□ -1.94
VPS41-214ENST00000490924 RNF213Q63HN8 5207 aa2.92□□□□□ -1.94
VPS41-214ENST00000490924 TPRXLQ17RH7 258 aa2.91□□□□□ -1.94
VPS41-214ENST00000490924 LCE3CQ5T5A8 94 aa2.9□□□□□ -1.95
VPS41-214ENST00000490924 KRTAP4-3Q9BYR4 195 aa2.9□□□□□ -1.95
VPS41-214ENST00000490924 KRTAP13-4Q3LI77 160 aa2.89□□□□□ -1.95
VPS41-214ENST00000490924 Q5VSD8 79 aa2.89□□□□□ -1.95
VPS41-214ENST00000490924 SEC61BP60468 96 aaKnown RBP2.88□□□□□ -1.95
VPS41-214ENST00000490924 CRIPTQ9P021 101 aa2.86□□□□□ -1.95
VPS41-214ENST00000490924 P0C880 135 aa2.85□□□□□ -1.95
VPS41-214ENST00000490924 MT1HL1P0DM35 61 aa2.85□□□□□ -1.95
VPS41-214ENST00000490924 KRTAP12-1P59990 96 aa2.84□□□□□ -1.95
VPS41-214ENST00000490924 LRP2P98164 4655 aa2.82□□□□□ -1.96
VPS41-214ENST00000490924 LCE3AQ5TA76 89 aa2.82□□□□□ -1.96
VPS41-214ENST00000490924 A0A0D9SG42 100 aa2.81□□□□□ -1.96
VPS41-214ENST00000490924 NDUFAF8A1L188 74 aa2.81□□□□□ -1.96
VPS41-214ENST00000490924 KRTAP12-2P59991 146 aa2.81□□□□□ -1.96
VPS41-214ENST00000490924 SPINT4Q6UDR6 99 aa2.77□□□□□ -1.97
VPS41-214ENST00000490924 MUC2Q02817 5179 aa2.76□□□□□ -1.97
VPS41-214ENST00000490924 FAT4Q6V0I7 4981 aa2.76□□□□□ -1.97
VPS41-214ENST00000490924 PP632Q6XCG6 107 aa2.76□□□□□ -1.97
VPS41-214ENST00000490924 KRTAP5-2Q701N4 177 aa2.75□□□□□ -1.97
VPS41-214ENST00000490924 R4GN34 69 aa2.74□□□□□ -1.97
VPS41-214ENST00000490924 C10orf95Q9H7T3 257 aa2.7□□□□□ -1.98
VPS41-214ENST00000490924 LPAP08519 4548 aa2.65□□□□□ -1.98
VPS41-214ENST00000490924 KRTAP19-2Q3LHN2 52 aa2.65□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms