RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 PKHD1L1Q86WI1 4243 aa0.28□□□□□ -2.36
HMGB1P38-201ENST00000490557 USP9XQ93008 2570 aaPredicted RBP0.28□□□□□ -2.37
HMGB1P38-201ENST00000490557 GPR98Q8WXG9 6306 aa0.27□□□□□ -2.37
HMGB1P38-201ENST00000490557 LRP2P98164 4655 aa0.27□□□□□ -2.37
HMGB1P38-201ENST00000490557 MDN1Q9NU22 5596 aa0.27□□□□□ -2.37
HMGB1P38-201ENST00000490557 DYNC2H1Q8NCM8 4307 aaKnown RBP0.27□□□□□ -2.37
HMGB1P38-201ENST00000490557 HTTP42858 3142 aa0.26□□□□□ -2.37
HMGB1P38-201ENST00000490557 KALRNO60229 2985 aa0.26□□□□□ -2.37
HMGB1P38-201ENST00000490557 MUC5ACP98088 5654 aa0.25□□□□□ -2.37
HMGB1P38-201ENST00000490557 APOBP04114 4563 aaKnown RBP0.25□□□□□ -2.37
HMGB1P38-201ENST00000490557 DEFB104AQ8WTQ1 72 aa0.25□□□□□ -2.37
HMGB1P38-201ENST00000490557 NBEAL1Q6ZS30 2694 aa0.25□□□□□ -2.37
HMGB1P38-201ENST00000490557 VPS13DQ5THJ4 4388 aa0.24□□□□□ -2.37
HMGB1P38-201ENST00000490557 SMR3BP02814 79 aaPredicted RBP0.24□□□□□ -2.37
HMGB1P38-201ENST00000490557 HIVEP1P15822 2718 aa0.24□□□□□ -2.37
HMGB1P38-201ENST00000490557 FRYQ5TBA9 3013 aa0.24□□□□□ -2.37
HMGB1P38-201ENST00000490557 FAT3Q8TDW7 4589 aa0.23□□□□□ -2.37
HMGB1P38-201ENST00000490557 TRIOO75962 3097 aa0.23□□□□□ -2.37
HMGB1P38-201ENST00000490557 CELSR3Q9NYQ7 3312 aa0.23□□□□□ -2.37
HMGB1P38-201ENST00000490557 DEFB1P60022 68 aa0.23□□□□□ -2.37
HMGB1P38-201ENST00000490557 PRCDQ00LT1 54 aa0.23□□□□□ -2.37
HMGB1P38-201ENST00000490557 KRTAP19-5Q3LI72 72 aa0.23□□□□□ -2.37
HMGB1P38-201ENST00000490557 USP9YO00507 2555 aaPredicted RBP0.23□□□□□ -2.37
HMGB1P38-201ENST00000490557 SPRR2GQ9BYE4 73 aa0.22□□□□□ -2.37
HMGB1P38-201ENST00000490557 TTTY10Q9BZA0 68 aa0.22□□□□□ -2.37
HMGB1P38-201ENST00000490557 KMT2DO14686 5537 aa0.22□□□□□ -2.37
HMGB1P38-201ENST00000490557 AKAP9Q99996 3911 aa0.21□□□□□ -2.38
HMGB1P38-201ENST00000490557 CHD7Q9P2D1 2997 aa0.21□□□□□ -2.38
HMGB1P38-201ENST00000490557 MAP1AP78559 2803 aaPredicted RBP0.2□□□□□ -2.38
HMGB1P38-201ENST00000490557 LAMA1P25391 3075 aa0.19□□□□□ -2.38
HMGB1P38-201ENST00000490557 FAT1Q14517 4588 aa0.19□□□□□ -2.38
HMGB1P38-201ENST00000490557 CRYBG3Q68DQ2 2970 aa0.19□□□□□ -2.38
HMGB1P38-201ENST00000490557 SPENQ96T58 3664 aaKnown RBP0.19□□□□□ -2.38
HMGB1P38-201ENST00000490557 SPTBN5Q9NRC6 3674 aaKnown RBP0.19□□□□□ -2.38
HMGB1P38-201ENST00000490557 SPTAN1Q13813 2472 aaKnown RBP0.19□□□□□ -2.38
HMGB1P38-201ENST00000490557 DNAH6Q9C0G6 4158 aa0.18□□□□□ -2.38
HMGB1P38-201ENST00000490557 LAMA5O15230 3695 aa0.18□□□□□ -2.38
HMGB1P38-201ENST00000490557 WDR87Q6ZQQ6 2873 aa0.18□□□□□ -2.38
HMGB1P38-201ENST00000490557 MXRA5Q9NR99 2828 aa0.18□□□□□ -2.38
HMGB1P38-201ENST00000490557 DNAH8Q96JB1 4490 aa0.16□□□□□ -2.38
HMGB1P38-201ENST00000490557 H3BSH0 61 aa0.16□□□□□ -2.38
HMGB1P38-201ENST00000490557 K7EIM0 57 aa0.16□□□□□ -2.38
HMGB1P38-201ENST00000490557 HERC1Q15751 4861 aa0.15□□□□□ -2.39
HMGB1P38-201ENST00000490557 RHPN1-AS1Q9BWJ2 59 aa0.15□□□□□ -2.39
HMGB1P38-201ENST00000490557 DNAH1Q9P2D7 4330 aa0.15□□□□□ -2.39
HMGB1P38-201ENST00000490557 DOPEY1Q5JWR5 2465 aa0.14□□□□□ -2.39
HMGB1P38-201ENST00000490557 SYNE2Q8WXH0 6885 aaKnown RBP0.14□□□□□ -2.39
HMGB1P38-201ENST00000490557 DNAH7Q8WXX0 4024 aa0.12□□□□□ -2.39
HMGB1P38-201ENST00000490557 ITPR3Q14573 2671 aa0.12□□□□□ -2.39
HMGB1P38-201ENST00000490557 ZFHX4Q86UP3 3567 aa0.11□□□□□ -2.39
HMGB1P38-201ENST00000490557 FSIP2Q5CZC0 6907 aa0.11□□□□□ -2.39
HMGB1P38-201ENST00000490557 DEFB136Q30KP8 78 aa0.1□□□□□ -2.39
HMGB1P38-201ENST00000490557 CEP250Q9BV73 2442 aa0.1□□□□□ -2.39
HMGB1P38-201ENST00000490557 ADGRG4Q8IZF6 3080 aa0.1□□□□□ -2.39
HMGB1P38-201ENST00000490557 MT1HP80294 61 aa0.09□□□□□ -2.4
HMGB1P38-201ENST00000490557 PCLOQ9Y6V0 5065 aa0.09□□□□□ -2.4
HMGB1P38-201ENST00000490557 DNAH10Q8IVF4 4471 aa0.09□□□□□ -2.4
HMGB1P38-201ENST00000490557 ITPR1Q14643 2758 aa0.08□□□□□ -2.4
HMGB1P38-201ENST00000490557 NBPF19A0A087WUL8 3843 aa0.07□□□□□ -2.4
HMGB1P38-201ENST00000490557 MACF1Q9UPN3 7388 aaKnown RBP0.07□□□□□ -2.4
HMGB1P38-201ENST00000490557 A0A096LNI7 61 aa0.07□□□□□ -2.4
HMGB1P38-201ENST00000490557 KRTAP19-7Q3SYF9 63 aa0.07□□□□□ -2.4
HMGB1P38-201ENST00000490557 RELNP78509 3460 aa0.07□□□□□ -2.4
HMGB1P38-201ENST00000490557 TMEM167AQ8TBQ9 72 aa0.06□□□□□ -2.4
HMGB1P38-201ENST00000490557 PLECQ15149 4684 aaKnown RBP0.06□□□□□ -2.4
HMGB1P38-201ENST00000490557 MUC2Q02817 5179 aa0.06□□□□□ -2.4
HMGB1P38-201ENST00000490557 MGAQ8IWI9 3026 aa0.05□□□□□ -2.4
HMGB1P38-201ENST00000490557 DMXL2Q8TDJ6 3036 aa0.05□□□□□ -2.4
HMGB1P38-201ENST00000490557 CSMD1Q96PZ7 3565 aa0.04□□□□□ -2.4
HMGB1P38-201ENST00000490557 SSPOA2VEC9 5147 aa0.03□□□□□ -2.4
HMGB1P38-201ENST00000490557 C5orf42Q9H799 3197 aa0.03□□□□□ -2.4
HMGB1P38-201ENST00000490557 H3BUX3 64 aa0.03□□□□□ -2.4
HMGB1P38-201ENST00000490557 LAMA3Q16787 3333 aa0.03□□□□□ -2.41
HMGB1P38-201ENST00000490557 TEX15Q9BXT5 2789 aa0.02□□□□□ -2.41
HMGB1P38-201ENST00000490557 MT1EP04732 61 aa0.02□□□□□ -2.41
HMGB1P38-201ENST00000490557 MUC17Q685J3 4493 aa0.01□□□□□ -2.41
HMGB1P38-201ENST00000490557 KRTAP19-8Q3LI54 63 aa0.01□□□□□ -2.41
HMGB1P38-201ENST00000490557 DYNC1H1Q14204 4646 aaKnown RBP0.01□□□□□ -2.41
HMGB1P38-201ENST00000490557 CMYA5Q8N3K9 4069 aa0□□□□□ -2.41
HMGB1P38-201ENST00000490557 KMT2CQ8NEZ4 4911 aaKnown RBP0□□□□□ -2.41
HMGB1P38-201ENST00000490557 KRTAP6-1Q3LI64 71 aa0□□□□□ -2.41
HMGB1P38-201ENST00000490557 STARD9Q9P2P6 4700 aa-0□□□□□ -2.41
HMGB1P38-201ENST00000490557 CFAP54Q96N23 3096 aa-0□□□□□ -2.41
HMGB1P38-201ENST00000490557 HTN1P15515 57 aa-0.01□□□□□ -2.41
HMGB1P38-201ENST00000490557 MYO9AB2RTY4 2548 aa-0.01□□□□□ -2.41
HMGB1P38-201ENST00000490557 MUC12Q9UKN1 5478 aa-0.01□□□□□ -2.41
HMGB1P38-201ENST00000490557 CFAP46Q8IYW2 2715 aa-0.01□□□□□ -2.41
HMGB1P38-201ENST00000490557 DNAH17Q9UFH2 4485 aa-0.02□□□□□ -2.41
HMGB1P38-201ENST00000490557 MT1LQ93083 61 aa-0.02□□□□□ -2.41
HMGB1P38-201ENST00000490557 LRBAP50851 2863 aa-0.02□□□□□ -2.41
HMGB1P38-201ENST00000490557 USH2AO75445 5202 aa-0.03□□□□□ -2.41
HMGB1P38-201ENST00000490557 DEFB133Q30KQ1 61 aa-0.04□□□□□ -2.42
HMGB1P38-201ENST00000490557 RPL39P5Q59GN2 51 aa-0.04□□□□□ -2.42
HMGB1P38-201ENST00000490557 DEFB124Q8NES8 71 aa-0.04□□□□□ -2.42
HMGB1P38-201ENST00000490557 SRCAPQ6ZRS2 3230 aa-0.04□□□□□ -2.42
HMGB1P38-201ENST00000490557 MT1XP80297 61 aa-0.06□□□□□ -2.42
HMGB1P38-201ENST00000490557 TLN1Q9Y490 2541 aaKnown RBP-0.07□□□□□ -2.42
HMGB1P38-201ENST00000490557 DSTQ03001 7570 aaKnown RBP-0.07□□□□□ -2.42
HMGB1P38-201ENST00000490557 UBR4Q5T4S7 5183 aa-0.07□□□□□ -2.42
HMGB1P38-201ENST00000490557 DEFB4AO15263 64 aa-0.08□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms