RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 KRTAP12-2P59991 146 aa6.7□□□□□ -1.34
USP48-210ENST00000489108 A0A087WVE0 104 aa6.66□□□□□ -1.34
USP48-210ENST00000489108 NAA38Q9BRA0 125 aaKnown RBP6.65□□□□□ -1.34
USP48-210ENST00000489108 PLAC4Q8WY50 150 aa6.62□□□□□ -1.35
USP48-210ENST00000489108 UQCR10Q9UDW1 63 aa6.61□□□□□ -1.35
USP48-210ENST00000489108 A8MUN3 132 aa6.6□□□□□ -1.35
USP48-210ENST00000489108 PYY3Q5JQD4 70 aa6.58□□□□□ -1.36
USP48-210ENST00000489108 H0YAA0 97 aa6.55□□□□□ -1.36
USP48-210ENST00000489108 DSTQ03001 7570 aaKnown RBP6.55□□□□□ -1.36
USP48-210ENST00000489108 ADM2Q7Z4H4 148 aa6.51□□□□□ -1.37
USP48-210ENST00000489108 KRTAP4-9Q9BYQ8 210 aa6.51□□□□□ -1.37
USP48-210ENST00000489108 KRTAP10-7P60409 375 aaPredicted RBP6.48□□□□□ -1.37
USP48-210ENST00000489108 NDUFC1O43677 76 aa6.47□□□□□ -1.37
USP48-210ENST00000489108 CYP4F30PQ9H0H9 118 aa6.47□□□□□ -1.37
USP48-210ENST00000489108 TP53AIP1Q9HCN2 124 aa6.45□□□□□ -1.38
USP48-210ENST00000489108 KRTAP10-12P60413 245 aa6.43□□□□□ -1.38
USP48-210ENST00000489108 TSTD3H0UI37 97 aa6.42□□□□□ -1.38
USP48-210ENST00000489108 H3BT86 120 aa6.41□□□□□ -1.38
USP48-210ENST00000489108 K7EP34 96 aa6.39□□□□□ -1.39
USP48-210ENST00000489108 M0R143 59 aa6.39□□□□□ -1.39
USP48-210ENST00000489108 R4GN34 69 aa6.37□□□□□ -1.39
USP48-210ENST00000489108 KRTAP4-12Q9BQ66 201 aa6.34□□□□□ -1.39
USP48-210ENST00000489108 UBL5Q9BZL1 73 aa6.33□□□□□ -1.4
USP48-210ENST00000489108 M0QZ58 72 aa6.31□□□□□ -1.4
USP48-210ENST00000489108 P0C880 135 aa6.3□□□□□ -1.4
USP48-210ENST00000489108 LOC101927531A0A1B0GV80 90 aa6.29□□□□□ -1.4
USP48-210ENST00000489108 LINC01554Q52M75 96 aa6.27□□□□□ -1.41
USP48-210ENST00000489108 TRAV22A0A0B4J277 110 aa6.26□□□□□ -1.41
USP48-210ENST00000489108 LCE1DQ5T752 114 aa6.26□□□□□ -1.41
USP48-210ENST00000489108 ACYP1P07311 99 aa6.25□□□□□ -1.41
USP48-210ENST00000489108 KRTAP9-9Q9BYP9 154 aa6.25□□□□□ -1.41
USP48-210ENST00000489108 KRTAP9-4Q9BYQ2 154 aa6.25□□□□□ -1.41
USP48-210ENST00000489108 LCE5AQ5TCM9 118 aa6.21□□□□□ -1.42
USP48-210ENST00000489108 C9orf118A6NHY6 69 aa6.2□□□□□ -1.42
USP48-210ENST00000489108 C20orf197Q8N268 126 aa6.2□□□□□ -1.42
USP48-210ENST00000489108 A0A1W2PPM0 123 aa6.19□□□□□ -1.42
USP48-210ENST00000489108 BATFQ16520 125 aa6.19□□□□□ -1.42
USP48-210ENST00000489108 SPCS1Q9Y6A9 102 aa6.18□□□□□ -1.42
USP48-210ENST00000489108 TAX1BP3O14907 124 aa6.13□□□□□ -1.43
USP48-210ENST00000489108 MT4P47944 62 aa6.13□□□□□ -1.43
USP48-210ENST00000489108 HMCN1Q96RW7 5635 aa6.11□□□□□ -1.43
USP48-210ENST00000489108 KRTAP19-3Q7Z4W3 81 aa6.11□□□□□ -1.43
USP48-210ENST00000489108 KRTAP5-10Q6L8G5 202 aa6.1□□□□□ -1.43
USP48-210ENST00000489108 AHNAK2Q8IVF2 5795 aa6.09□□□□□ -1.43
USP48-210ENST00000489108 H0Y9P7 68 aa6.09□□□□□ -1.43
USP48-210ENST00000489108 KRTAP19-7Q3SYF9 63 aa6.07□□□□□ -1.44
USP48-210ENST00000489108 LCE4AQ5TA78 99 aa6.07□□□□□ -1.44
USP48-210ENST00000489108 TMA7Q9Y2S6 64 aaKnown RBP6.07□□□□□ -1.44
USP48-210ENST00000489108 ATOX1O00244 68 aa6.05□□□□□ -1.44
USP48-210ENST00000489108 UQCRQO14949 82 aa6.04□□□□□ -1.44
USP48-210ENST00000489108 MT1EP04732 61 aa6.04□□□□□ -1.44
USP48-210ENST00000489108 CYSTM1Q9H1C7 97 aa6.02□□□□□ -1.45
USP48-210ENST00000489108 PRO0461Q9UI25 63 aa6□□□□□ -1.45
USP48-210ENST00000489108 MT-ATP8P03928 68 aa5.99□□□□□ -1.45
USP48-210ENST00000489108 KRTAP4-7Q9BYR0 210 aa5.97□□□□□ -1.45
USP48-210ENST00000489108 LINC00208Q96KT6 92 aa5.95□□□□□ -1.46
USP48-210ENST00000489108 KRTAP5-7Q6L8G8 165 aa5.93□□□□□ -1.46
USP48-210ENST00000489108 MT1GP13640 62 aa5.91□□□□□ -1.46
USP48-210ENST00000489108 KRTAP5-4Q6L8H1 288 aa5.86□□□□□ -1.47
USP48-210ENST00000489108 SMIM6P0DI80 62 aa5.85□□□□□ -1.47
USP48-210ENST00000489108 HIST1H4AP62805 103 aaKnown RBP5.85□□□□□ -1.47
USP48-210ENST00000489108 H3BS24 57 aa5.84□□□□□ -1.47
USP48-210ENST00000489108 KRTAP5-3Q6L8H2 238 aa5.83□□□□□ -1.48
USP48-210ENST00000489108 PP632Q6XCG6 107 aa5.83□□□□□ -1.48
USP48-210ENST00000489108 DMAC1Q96GE9 116 aa5.82□□□□□ -1.48
USP48-210ENST00000489108 MT1MQ8N339 61 aa5.8□□□□□ -1.48
USP48-210ENST00000489108 MP68P56378 58 aa5.79□□□□□ -1.48
USP48-210ENST00000489108 ETDBQ3ZM63 59 aa5.79□□□□□ -1.48
USP48-210ENST00000489108 KRTAP19-5Q3LI72 72 aa5.78□□□□□ -1.48
USP48-210ENST00000489108 CAMK2N1Q7Z7J9 78 aa5.77□□□□□ -1.49
USP48-210ENST00000489108 SPRR5A0A1B0GTR4 108 aa5.74□□□□□ -1.49
USP48-210ENST00000489108 ATP5EP2Q5VTU8 51 aa5.73□□□□□ -1.49
USP48-210ENST00000489108 KRTAP4-3Q9BYR4 195 aa5.73□□□□□ -1.49
USP48-210ENST00000489108 KRTAP4-2Q9BYR5 136 aa5.71□□□□□ -1.5
USP48-210ENST00000489108 OCR1Q9BZK8 76 aa5.71□□□□□ -1.5
USP48-210ENST00000489108 F8W1H4 67 aa5.7□□□□□ -1.5
USP48-210ENST00000489108 A0A0D9SG42 100 aa5.69□□□□□ -1.5
USP48-210ENST00000489108 MT1LQ93083 61 aa5.68□□□□□ -1.5
USP48-210ENST00000489108 TRAV7A0A075B6U4 112 aa5.67□□□□□ -1.5
USP48-210ENST00000489108 COL5A1-AS1Q5SY13 56 aa5.67□□□□□ -1.5
USP48-210ENST00000489108 KRTAP13-4Q3LI77 160 aa5.64□□□□□ -1.51
USP48-210ENST00000489108 GTF2H5Q6ZYL4 71 aa5.64□□□□□ -1.51
USP48-210ENST00000489108 H3BPC8 53 aa5.61□□□□□ -1.51
USP48-210ENST00000489108 SPTSSBQ8NFR3 76 aa5.6□□□□□ -1.51
USP48-210ENST00000489108 ACYP2P14621 99 aa5.58□□□□□ -1.52
USP48-210ENST00000489108 KRTAP20-2Q3LI61 65 aa5.58□□□□□ -1.52
USP48-210ENST00000489108 KRTAP4-11Q9BYQ6 195 aa5.58□□□□□ -1.52
USP48-210ENST00000489108 FAM240AA0A1B0GVK7 77 aa5.57□□□□□ -1.52
USP48-210ENST00000489108 KRTAP19-4Q3LI73 84 aa5.55□□□□□ -1.52
USP48-210ENST00000489108 LINC00643Q86TS7 51 aa5.51□□□□□ -1.53
USP48-210ENST00000489108 CHKB-CPT1BH3BT56 60 aa5.46□□□□□ -1.54
USP48-210ENST00000489108 C10orf95Q9H7T3 257 aa5.41□□□□□ -1.54
USP48-210ENST00000489108 LOC105371267A0A1B0GV96 52 aa5.39□□□□□ -1.55
USP48-210ENST00000489108 KRTAP12-4P60329 112 aa5.37□□□□□ -1.55
USP48-210ENST00000489108 LCE3AQ5TA76 89 aa5.36□□□□□ -1.55
USP48-210ENST00000489108 SPINT4Q6UDR6 99 aa5.36□□□□□ -1.55
USP48-210ENST00000489108 KRTAP5-5Q701N2 237 aaPredicted RBP5.36□□□□□ -1.55
USP48-210ENST00000489108 SCGB1A1P11684 91 aa5.35□□□□□ -1.55
USP48-210ENST00000489108 SYNE1Q8NF91 8797 aaKnown RBP5.28□□□□□ -1.56
USP48-210ENST00000489108 SPATA8Q6RVD6 105 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms