RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 ACYP1P07311 99 aa9.95□□□□□ -0.82
PTPN4-211ENST00000488279 PCP4L1A6NKN8 68 aa9.92□□□□□ -0.82
PTPN4-211ENST00000488279 IMUPQ9GZP8 106 aa9.92□□□□□ -0.82
PTPN4-211ENST00000488279 UQCRQO14949 82 aa9.89□□□□□ -0.83
PTPN4-211ENST00000488279 HIST1H4AP62805 103 aaKnown RBP9.88□□□□□ -0.83
PTPN4-211ENST00000488279 ATP5EP2Q5VTU8 51 aa9.88□□□□□ -0.83
PTPN4-211ENST00000488279 MUC12Q9UKN1 5478 aa9.87□□□□□ -0.83
PTPN4-211ENST00000488279 ATOX1O00244 68 aa9.87□□□□□ -0.83
PTPN4-211ENST00000488279 NDUFC1O43677 76 aa9.87□□□□□ -0.83
PTPN4-211ENST00000488279 NEBP20929 6669 aa9.85□□□□□ -0.83
PTPN4-211ENST00000488279 H0Y9P7 68 aa9.85□□□□□ -0.83
PTPN4-211ENST00000488279 FAM240AA0A1B0GVK7 77 aa9.84□□□□□ -0.83
PTPN4-211ENST00000488279 H0YAA0 97 aa9.81□□□□□ -0.84
PTPN4-211ENST00000488279 A8MUN3 132 aa9.76□□□□□ -0.85
PTPN4-211ENST00000488279 KRTAP5-9P26371 169 aa9.73□□□□□ -0.85
PTPN4-211ENST00000488279 ADM2Q7Z4H4 148 aa9.71□□□□□ -0.86
PTPN4-211ENST00000488279 LINC00208Q96KT6 92 aa9.68□□□□□ -0.86
PTPN4-211ENST00000488279 LINC00643Q86TS7 51 aa9.67□□□□□ -0.86
PTPN4-211ENST00000488279 KMT2DO14686 5537 aa9.66□□□□□ -0.86
PTPN4-211ENST00000488279 MP68P56378 58 aa9.62□□□□□ -0.87
PTPN4-211ENST00000488279 KRTAP20-1Q3LI63 56 aa9.62□□□□□ -0.87
PTPN4-211ENST00000488279 MDN1Q9NU22 5596 aa9.62□□□□□ -0.87
PTPN4-211ENST00000488279 PRO2289Q9P1D8 64 aa9.58□□□□□ -0.88
PTPN4-211ENST00000488279 OCR1Q9BZK8 76 aa9.57□□□□□ -0.88
PTPN4-211ENST00000488279 PLAC4Q8WY50 150 aa9.54□□□□□ -0.88
PTPN4-211ENST00000488279 MT1XP80297 61 aa9.49□□□□□ -0.89
PTPN4-211ENST00000488279 R4GN34 69 aa9.49□□□□□ -0.89
PTPN4-211ENST00000488279 C20orf197Q8N268 126 aa9.47□□□□□ -0.89
PTPN4-211ENST00000488279 H3BPC8 53 aa9.44□□□□□ -0.9
PTPN4-211ENST00000488279 P0C880 135 aa9.44□□□□□ -0.9
PTPN4-211ENST00000488279 SPRR2FQ96RM1 72 aa9.42□□□□□ -0.9
PTPN4-211ENST00000488279 M0QZ58 72 aa9.39□□□□□ -0.91
PTPN4-211ENST00000488279 DMAC1Q96GE9 116 aa9.39□□□□□ -0.91
PTPN4-211ENST00000488279 SCGB1A1P11684 91 aa9.35□□□□□ -0.91
PTPN4-211ENST00000488279 KRTAP2-3P0C7H8 128 aa9.34□□□□□ -0.91
PTPN4-211ENST00000488279 KRTAP8-1Q8IUC2 63 aa9.34□□□□□ -0.91
PTPN4-211ENST00000488279 KRTAP2-4Q9BYR9 128 aa9.34□□□□□ -0.91
PTPN4-211ENST00000488279 A0A1B0GV90 55 aa9.33□□□□□ -0.92
PTPN4-211ENST00000488279 SPRR2EP22531 72 aa9.32□□□□□ -0.92
PTPN4-211ENST00000488279 SPRR2BP35325 72 aa9.32□□□□□ -0.92
PTPN4-211ENST00000488279 SPRR2AP35326 72 aa9.32□□□□□ -0.92
PTPN4-211ENST00000488279 KRTAP12-2P59991 146 aa9.31□□□□□ -0.92
PTPN4-211ENST00000488279 J3QR89 54 aa9.3□□□□□ -0.92
PTPN4-211ENST00000488279 LINC01554Q52M75 96 aa9.28□□□□□ -0.92
PTPN4-211ENST00000488279 TRAV7A0A075B6U4 112 aa9.21□□□□□ -0.94
PTPN4-211ENST00000488279 ACYP2P14621 99 aa9.17□□□□□ -0.94
PTPN4-211ENST00000488279 LCE1AQ5T7P2 110 aa9.17□□□□□ -0.94
PTPN4-211ENST00000488279 KRTAP4-8A0A0G2JLE6 195 aa9.15□□□□□ -0.94
PTPN4-211ENST00000488279 KRTAP4-8Q9BYQ9 185 aa9.15□□□□□ -0.94
PTPN4-211ENST00000488279 SPTSSBQ8NFR3 76 aa9.11□□□□□ -0.95
PTPN4-211ENST00000488279 MT-ATP8P03928 68 aa9.07□□□□□ -0.96
PTPN4-211ENST00000488279 KRTAP10-7P60409 375 aaPredicted RBP9.05□□□□□ -0.96
PTPN4-211ENST00000488279 KRTAP2-2Q9BYT5 123 aa9.03□□□□□ -0.96
PTPN4-211ENST00000488279 KRTAP2-1Q9BYU5 128 aa9.03□□□□□ -0.96
PTPN4-211ENST00000488279 SPRR2DP22532 72 aa9.02□□□□□ -0.97
PTPN4-211ENST00000488279 KRTAP10-12P60413 245 aa9.02□□□□□ -0.97
PTPN4-211ENST00000488279 SMIM20Q8N5G0 67 aa9.02□□□□□ -0.97
PTPN4-211ENST00000488279 CHKB-CPT1BH3BT56 60 aa8.99□□□□□ -0.97
PTPN4-211ENST00000488279 SNURFQ9Y675 71 aa8.85□□□□□ -0.99
PTPN4-211ENST00000488279 K7ERU9 68 aa8.82□□□□□ -1
PTPN4-211ENST00000488279 LCE3BQ5TA77 95 aa8.79□□□□□ -1
PTPN4-211ENST00000488279 SPANXA2-OT1Q8N9U9 137 aa8.77□□□□□ -1.01
PTPN4-211ENST00000488279 LOC100996750A0A140TA64 210 aa8.72□□□□□ -1.01
PTPN4-211ENST00000488279 KRTAP13-4Q3LI77 160 aa8.72□□□□□ -1.01
PTPN4-211ENST00000488279 KRTAP4-6Q9BYQ5 205 aa8.72□□□□□ -1.01
PTPN4-211ENST00000488279 CAMK2N1Q7Z7J9 78 aa8.7□□□□□ -1.02
PTPN4-211ENST00000488279 SERP2Q8N6R1 65 aa8.62□□□□□ -1.03
PTPN4-211ENST00000488279 COA5Q86WW8 74 aa8.53□□□□□ -1.04
PTPN4-211ENST00000488279 SEC61GP60059 68 aa8.52□□□□□ -1.05
PTPN4-211ENST00000488279 SERP1Q9Y6X1 66 aa8.51□□□□□ -1.05
PTPN4-211ENST00000488279 KRTAP19-7Q3SYF9 63 aa8.48□□□□□ -1.05
PTPN4-211ENST00000488279 A0A0D9SG42 100 aa8.47□□□□□ -1.05
PTPN4-211ENST00000488279 LCE5AQ5TCM9 118 aa8.45□□□□□ -1.06
PTPN4-211ENST00000488279 MT1EP04732 61 aa8.42□□□□□ -1.06
PTPN4-211ENST00000488279 SPATA8Q6RVD6 105 aa8.4□□□□□ -1.06
PTPN4-211ENST00000488279 KRTAP19-3Q7Z4W3 81 aa8.4□□□□□ -1.06
PTPN4-211ENST00000488279 SPINT4Q6UDR6 99 aa8.38□□□□□ -1.07
PTPN4-211ENST00000488279 A0A1B0GU33 70 aa8.37□□□□□ -1.07
PTPN4-211ENST00000488279 DSTQ03001 7570 aaKnown RBP8.33□□□□□ -1.08
PTPN4-211ENST00000488279 COX7CP15954 63 aa8.28□□□□□ -1.08
PTPN4-211ENST00000488279 KRTAP12-1P59990 96 aa8.27□□□□□ -1.09
PTPN4-211ENST00000488279 KRTAP19-5Q3LI72 72 aa8.23□□□□□ -1.09
PTPN4-211ENST00000488279 KRTAP4-9Q9BYQ8 210 aa8.22□□□□□ -1.09
PTPN4-211ENST00000488279 CYSTM1Q9H1C7 97 aa8.22□□□□□ -1.09
PTPN4-211ENST00000488279 H7BZZ5 65 aa8.21□□□□□ -1.1
PTPN4-211ENST00000488279 MT1GP13640 62 aa8.2□□□□□ -1.1
PTPN4-211ENST00000488279 PP632Q6XCG6 107 aa8.15□□□□□ -1.1
PTPN4-211ENST00000488279 SMIM26A0A096LP01 95 aa8.14□□□□□ -1.11
PTPN4-211ENST00000488279 A0A1B0GU69 56 aa8.13□□□□□ -1.11
PTPN4-211ENST00000488279 GPR98Q8WXG9 6306 aa8.1□□□□□ -1.11
PTPN4-211ENST00000488279 A8MU10 97 aa8.04□□□□□ -1.12
PTPN4-211ENST00000488279 MT1MQ8N339 61 aa8.03□□□□□ -1.12
PTPN4-211ENST00000488279 MT1LQ93083 61 aa8.01□□□□□ -1.13
PTPN4-211ENST00000488279 LCE1DQ5T752 114 aa8□□□□□ -1.13
PTPN4-211ENST00000488279 TNP1P09430 55 aa7.97□□□□□ -1.13
PTPN4-211ENST00000488279 LCE4AQ5TA78 99 aa7.96□□□□□ -1.14
PTPN4-211ENST00000488279 LCE3AQ5TA76 89 aa7.95□□□□□ -1.14
PTPN4-211ENST00000488279 C10orf95Q9H7T3 257 aa7.95□□□□□ -1.14
PTPN4-211ENST00000488279 MT4P47944 62 aa7.9□□□□□ -1.14
PTPN4-211ENST00000488279 HMCN1Q96RW7 5635 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms