RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 LINC00208Q96KT6 92 aa9.18□□□□□ -0.94
HDAC4-209ENST00000487617 Q5VV11 94 aa9.17□□□□□ -0.94
HDAC4-209ENST00000487617 MT1BP07438 61 aa9.15□□□□□ -0.94
HDAC4-209ENST00000487617 OCR1Q9BZK8 76 aa9.15□□□□□ -0.94
HDAC4-209ENST00000487617 J3QR89 54 aa9.14□□□□□ -0.95
HDAC4-209ENST00000487617 NDUFC1O43677 76 aa9.14□□□□□ -0.95
HDAC4-209ENST00000487617 KRTAP19-8Q3LI54 63 aa9.14□□□□□ -0.95
HDAC4-209ENST00000487617 MP68P56378 58 aa9.13□□□□□ -0.95
HDAC4-209ENST00000487617 A8MUN3 132 aa9.12□□□□□ -0.95
HDAC4-209ENST00000487617 MACF1Q9UPN3 7388 aaKnown RBP9.11□□□□□ -0.95
HDAC4-209ENST00000487617 IMUPQ9GZP8 106 aa9.11□□□□□ -0.95
HDAC4-209ENST00000487617 SYNE2Q8WXH0 6885 aaKnown RBP9.08□□□□□ -0.96
HDAC4-209ENST00000487617 CRIPTQ9P021 101 aa9.07□□□□□ -0.96
HDAC4-209ENST00000487617 A6NN06 94 aa9.05□□□□□ -0.96
HDAC4-209ENST00000487617 H0YAA0 97 aa9.02□□□□□ -0.97
HDAC4-209ENST00000487617 SCGB1A1P11684 91 aa9.01□□□□□ -0.97
HDAC4-209ENST00000487617 H3BPC8 53 aa9□□□□□ -0.97
HDAC4-209ENST00000487617 KRTAP6-3Q3LI67 103 aa8.96□□□□□ -0.98
HDAC4-209ENST00000487617 ADM2Q7Z4H4 148 aa8.96□□□□□ -0.98
HDAC4-209ENST00000487617 KRTAP10-5P60370 271 aa8.94□□□□□ -0.98
HDAC4-209ENST00000487617 DMAC1Q96GE9 116 aa8.87□□□□□ -0.99
HDAC4-209ENST00000487617 MT-ATP8P03928 68 aa8.82□□□□□ -1
HDAC4-209ENST00000487617 K7ERU9 68 aa8.79□□□□□ -1
HDAC4-209ENST00000487617 P0C880 135 aa8.75□□□□□ -1.01
HDAC4-209ENST00000487617 C20orf197Q8N268 126 aa8.75□□□□□ -1.01
HDAC4-209ENST00000487617 SMIM20Q8N5G0 67 aa8.74□□□□□ -1.01
HDAC4-209ENST00000487617 TRAV7A0A075B6U4 112 aa8.73□□□□□ -1.01
HDAC4-209ENST00000487617 R4GN34 69 aa8.73□□□□□ -1.01
HDAC4-209ENST00000487617 ACYP2P14621 99 aa8.68□□□□□ -1.02
HDAC4-209ENST00000487617 PLAC4Q8WY50 150 aa8.67□□□□□ -1.02
HDAC4-209ENST00000487617 M0QZ58 72 aa8.66□□□□□ -1.02
HDAC4-209ENST00000487617 KRTAP3-2Q9BYR7 98 aa8.66□□□□□ -1.02
HDAC4-209ENST00000487617 PRO2289Q9P1D8 64 aa8.63□□□□□ -1.03
HDAC4-209ENST00000487617 MT1XP80297 61 aa8.59□□□□□ -1.03
HDAC4-209ENST00000487617 SPTSSBQ8NFR3 76 aa8.58□□□□□ -1.04
HDAC4-209ENST00000487617 SNURFQ9Y675 71 aa8.57□□□□□ -1.04
HDAC4-209ENST00000487617 LINC01554Q52M75 96 aa8.55□□□□□ -1.04
HDAC4-209ENST00000487617 CHKB-CPT1BH3BT56 60 aa8.54□□□□□ -1.04
HDAC4-209ENST00000487617 KRTAP5-9P26371 169 aa8.54□□□□□ -1.04
HDAC4-209ENST00000487617 NEBP20929 6669 aa8.53□□□□□ -1.04
HDAC4-209ENST00000487617 MUC12Q9UKN1 5478 aa8.5□□□□□ -1.05
HDAC4-209ENST00000487617 SERP2Q8N6R1 65 aa8.44□□□□□ -1.06
HDAC4-209ENST00000487617 SPANXA2-OT1Q8N9U9 137 aa8.44□□□□□ -1.06
HDAC4-209ENST00000487617 KRTAP12-2P59991 146 aa8.36□□□□□ -1.07
HDAC4-209ENST00000487617 KMT2DO14686 5537 aa8.35□□□□□ -1.07
HDAC4-209ENST00000487617 SPRR2FQ96RM1 72 aa8.33□□□□□ -1.08
HDAC4-209ENST00000487617 KRTAP8-1Q8IUC2 63 aa8.32□□□□□ -1.08
HDAC4-209ENST00000487617 KRTAP20-1Q3LI63 56 aa8.29□□□□□ -1.08
HDAC4-209ENST00000487617 MDN1Q9NU22 5596 aa8.28□□□□□ -1.08
HDAC4-209ENST00000487617 KRTAP4-8A0A0G2JLE6 195 aa8.21□□□□□ -1.1
HDAC4-209ENST00000487617 SPRR2EP22531 72 aa8.21□□□□□ -1.1
HDAC4-209ENST00000487617 SPRR2BP35325 72 aa8.21□□□□□ -1.1
HDAC4-209ENST00000487617 SPRR2AP35326 72 aa8.21□□□□□ -1.1
HDAC4-209ENST00000487617 COA5Q86WW8 74 aa8.21□□□□□ -1.1
HDAC4-209ENST00000487617 KRTAP4-8Q9BYQ9 185 aa8.21□□□□□ -1.1
HDAC4-209ENST00000487617 KRTAP10-7P60409 375 aaPredicted RBP8.2□□□□□ -1.1
HDAC4-209ENST00000487617 COX7CP15954 63 aa8.18□□□□□ -1.1
HDAC4-209ENST00000487617 KRTAP13-4Q3LI77 160 aa8.18□□□□□ -1.1
HDAC4-209ENST00000487617 KRTAP10-12P60413 245 aa8.15□□□□□ -1.1
HDAC4-209ENST00000487617 LCE1AQ5T7P2 110 aa8.09□□□□□ -1.11
HDAC4-209ENST00000487617 KRTAP2-3P0C7H8 128 aa8.08□□□□□ -1.12
HDAC4-209ENST00000487617 SEC61GP60059 68 aa8.08□□□□□ -1.12
HDAC4-209ENST00000487617 KRTAP2-4Q9BYR9 128 aa8.08□□□□□ -1.12
HDAC4-209ENST00000487617 SERP1Q9Y6X1 66 aa8.06□□□□□ -1.12
HDAC4-209ENST00000487617 H7BZZ5 65 aa8.05□□□□□ -1.12
HDAC4-209ENST00000487617 CYSTM1Q9H1C7 97 aa8.05□□□□□ -1.12
HDAC4-209ENST00000487617 CAMK2N1Q7Z7J9 78 aa8.04□□□□□ -1.12
HDAC4-209ENST00000487617 A0A0D9SG42 100 aa7.97□□□□□ -1.13
HDAC4-209ENST00000487617 A0A1B0GU33 70 aa7.93□□□□□ -1.14
HDAC4-209ENST00000487617 SPRR2DP22532 72 aa7.93□□□□□ -1.14
HDAC4-209ENST00000487617 SPATA8Q6RVD6 105 aa7.93□□□□□ -1.14
HDAC4-209ENST00000487617 ANAPC13Q9BS18 74 aa7.91□□□□□ -1.14
HDAC4-209ENST00000487617 SPINT4Q6UDR6 99 aa7.84□□□□□ -1.15
HDAC4-209ENST00000487617 KRTAP2-2Q9BYT5 123 aa7.83□□□□□ -1.16
HDAC4-209ENST00000487617 KRTAP2-1Q9BYU5 128 aa7.83□□□□□ -1.16
HDAC4-209ENST00000487617 A0A1B0GU69 56 aa7.8□□□□□ -1.16
HDAC4-209ENST00000487617 KRTAP12-1P59990 96 aa7.77□□□□□ -1.17
HDAC4-209ENST00000487617 CCDC179H3BU77 68 aa7.75□□□□□ -1.17
HDAC4-209ENST00000487617 SMIM26A0A096LP01 95 aa7.71□□□□□ -1.18
HDAC4-209ENST00000487617 LCE3BQ5TA77 95 aa7.71□□□□□ -1.18
HDAC4-209ENST00000487617 KRTAP19-7Q3SYF9 63 aa7.66□□□□□ -1.18
HDAC4-209ENST00000487617 A8MU10 97 aa7.65□□□□□ -1.18
HDAC4-209ENST00000487617 ATP5EP56381 51 aaPredicted RBP7.65□□□□□ -1.18
HDAC4-209ENST00000487617 PCP4P48539 62 aa7.62□□□□□ -1.19
HDAC4-209ENST00000487617 MT1EP04732 61 aa7.61□□□□□ -1.19
HDAC4-209ENST00000487617 PRR15LQ9BU68 103 aa7.58□□□□□ -1.2
HDAC4-209ENST00000487617 LCE5AQ5TCM9 118 aa7.54□□□□□ -1.2
HDAC4-209ENST00000487617 KRTAP19-3Q7Z4W3 81 aa7.54□□□□□ -1.2
HDAC4-209ENST00000487617 KRTAP19-5Q3LI72 72 aa7.5□□□□□ -1.21
HDAC4-209ENST00000487617 LINC01558Q9Y6Z2 57 aa7.5□□□□□ -1.21
HDAC4-209ENST00000487617 TMEM258P61165 79 aa7.45□□□□□ -1.22
HDAC4-209ENST00000487617 C10orf95Q9H7T3 257 aa7.43□□□□□ -1.22
HDAC4-209ENST00000487617 TNP1P09430 55 aa7.42□□□□□ -1.22
HDAC4-209ENST00000487617 MT1GP13640 62 aa7.36□□□□□ -1.23
HDAC4-209ENST00000487617 LCE3AQ5TA76 89 aa7.36□□□□□ -1.23
HDAC4-209ENST00000487617 UQCR11O14957 56 aa7.32□□□□□ -1.24
HDAC4-209ENST00000487617 PP632Q6XCG6 107 aa7.31□□□□□ -1.24
HDAC4-209ENST00000487617 MT1LQ93083 61 aa7.28□□□□□ -1.24
HDAC4-209ENST00000487617 MT1MQ8N339 61 aa7.24□□□□□ -1.25
HDAC4-209ENST00000487617 DSTQ03001 7570 aaKnown RBP7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms