RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 KRTAP15-1Q3LI76 137 aa5.29□□□□□ -1.56
HDAC6-228ENST00000486227 DNAH10Q8IVF4 4471 aa5.27□□□□□ -1.57
HDAC6-228ENST00000486227 ALMS1Q8TCU4 4167 aa5.25□□□□□ -1.57
HDAC6-228ENST00000486227 VPS13DQ5THJ4 4388 aa5.24□□□□□ -1.57
HDAC6-228ENST00000486227 STARD9Q9P2P6 4700 aa5.22□□□□□ -1.57
HDAC6-228ENST00000486227 KRTAP3-2Q9BYR7 98 aa5.21□□□□□ -1.57
HDAC6-228ENST00000486227 PRKDCP78527 4128 aaKnown RBP5.19□□□□□ -1.58
HDAC6-228ENST00000486227 KRTAP3-3Q9BYR6 98 aa5.18□□□□□ -1.58
HDAC6-228ENST00000486227 DNAH17Q9UFH2 4485 aa5.17□□□□□ -1.58
HDAC6-228ENST00000486227 FAT1Q14517 4588 aa5.14□□□□□ -1.59
HDAC6-228ENST00000486227 DYNC1H1Q14204 4646 aaKnown RBP5.14□□□□□ -1.59
HDAC6-228ENST00000486227 ANK2Q01484 3957 aa5.1□□□□□ -1.59
HDAC6-228ENST00000486227 LRP1BQ9NZR2 4599 aa5.1□□□□□ -1.59
HDAC6-228ENST00000486227 DNAH2Q9P225 4427 aa5.08□□□□□ -1.6
HDAC6-228ENST00000486227 KMT2AQ03164 3969 aa5.04□□□□□ -1.6
HDAC6-228ENST00000486227 RYR1P21817 5038 aa5□□□□□ -1.61
HDAC6-228ENST00000486227 DNAH8Q96JB1 4490 aa5□□□□□ -1.61
HDAC6-228ENST00000486227 DNAH3Q8TD57 4116 aa5□□□□□ -1.61
HDAC6-228ENST00000486227 DYNC2H1Q8NCM8 4307 aaKnown RBP4.97□□□□□ -1.61
HDAC6-228ENST00000486227 LYSTQ99698 3801 aa4.95□□□□□ -1.62
HDAC6-228ENST00000486227 KIAA1109Q2LD37 5005 aa4.94□□□□□ -1.62
HDAC6-228ENST00000486227 CMYA5Q8N3K9 4069 aa4.94□□□□□ -1.62
HDAC6-228ENST00000486227 FAT2Q9NYQ8 4349 aa4.93□□□□□ -1.62
HDAC6-228ENST00000486227 SACSQ9NZJ4 4579 aa4.92□□□□□ -1.62
HDAC6-228ENST00000486227 LORP23490 312 aaPredicted RBP4.88□□□□□ -1.63
HDAC6-228ENST00000486227 KRTAP4-1Q9BYQ7 146 aa4.87□□□□□ -1.63
HDAC6-228ENST00000486227 VPS13BQ7Z7G8 4022 aa4.87□□□□□ -1.63
HDAC6-228ENST00000486227 RYR3Q15413 4870 aa4.85□□□□□ -1.63
HDAC6-228ENST00000486227 MYCBP2O75592 4640 aa4.84□□□□□ -1.63
HDAC6-228ENST00000486227 KRTAP17-1Q9BYP8 105 aa4.81□□□□□ -1.64
HDAC6-228ENST00000486227 INE1O15225 51 aa4.81□□□□□ -1.64
HDAC6-228ENST00000486227 APOBP04114 4563 aaKnown RBP4.8□□□□□ -1.64
HDAC6-228ENST00000486227 DNAH6Q9C0G6 4158 aa4.79□□□□□ -1.64
HDAC6-228ENST00000486227 DNAH7Q8WXX0 4024 aa4.78□□□□□ -1.64
HDAC6-228ENST00000486227 KRTAP23-1A1A580 65 aa4.78□□□□□ -1.64
HDAC6-228ENST00000486227 LRP1Q07954 4544 aaKnown RBP4.77□□□□□ -1.65
HDAC6-228ENST00000486227 HECTD4Q9Y4D8 3996 aa4.76□□□□□ -1.65
HDAC6-228ENST00000486227 FRAS1Q86XX4 4008 aa4.75□□□□□ -1.65
HDAC6-228ENST00000486227 HYDINQ4G0P3 5121 aa4.74□□□□□ -1.65
HDAC6-228ENST00000486227 KRTAP10-12P60413 245 aa4.74□□□□□ -1.65
HDAC6-228ENST00000486227 RYR2Q92736 4967 aa4.73□□□□□ -1.65
HDAC6-228ENST00000486227 FAT3Q8TDW7 4589 aa4.7□□□□□ -1.66
HDAC6-228ENST00000486227 PKHD1P08F94 4074 aa4.64□□□□□ -1.67
HDAC6-228ENST00000486227 MT1HP80294 61 aa4.64□□□□□ -1.67
HDAC6-228ENST00000486227 HERC2O95714 4834 aa4.61□□□□□ -1.67
HDAC6-228ENST00000486227 LCE3AQ5TA76 89 aa4.58□□□□□ -1.68
HDAC6-228ENST00000486227 MT2AP02795 61 aa4.57□□□□□ -1.68
HDAC6-228ENST00000486227 KRTAP12-3P60328 96 aa4.56□□□□□ -1.68
HDAC6-228ENST00000486227 KMT2CQ8NEZ4 4911 aaKnown RBP4.55□□□□□ -1.68
HDAC6-228ENST00000486227 CRCT1Q9UGL9 99 aa4.54□□□□□ -1.68
HDAC6-228ENST00000486227 LRP2P98164 4655 aa4.54□□□□□ -1.68
HDAC6-228ENST00000486227 HSPG2P98160 4391 aa4.54□□□□□ -1.68
HDAC6-228ENST00000486227 KRTAP8-1Q8IUC2 63 aa4.53□□□□□ -1.68
HDAC6-228ENST00000486227 MT1FP04733 61 aa4.51□□□□□ -1.69
HDAC6-228ENST00000486227 SPRR2GQ9BYE4 73 aa4.51□□□□□ -1.69
HDAC6-228ENST00000486227 PKD1P98161 4303 aa4.5□□□□□ -1.69
HDAC6-228ENST00000486227 BIRC6Q9NR09 4857 aa4.47□□□□□ -1.69
HDAC6-228ENST00000486227 LPAP08519 4548 aa4.34□□□□□ -1.71
HDAC6-228ENST00000486227 KRTAP19-1Q8IUB9 90 aa4.34□□□□□ -1.71
HDAC6-228ENST00000486227 EPPK1P58107 5090 aaKnown RBP4.34□□□□□ -1.71
HDAC6-228ENST00000486227 PCLOQ9Y6V0 5065 aa4.33□□□□□ -1.72
HDAC6-228ENST00000486227 HERC1Q15751 4861 aa4.32□□□□□ -1.72
HDAC6-228ENST00000486227 LCE2CQ5TA81 110 aa4.29□□□□□ -1.72
HDAC6-228ENST00000486227 ABCA13Q86UQ4 5058 aa4.28□□□□□ -1.72
HDAC6-228ENST00000486227 SPRR5A0A1B0GTR4 108 aa4.28□□□□□ -1.72
HDAC6-228ENST00000486227 SPRR2FQ96RM1 72 aa4.27□□□□□ -1.73
HDAC6-228ENST00000486227 TNXBP22105 4242 aa4.26□□□□□ -1.73
HDAC6-228ENST00000486227 KRTAP19-8Q3LI54 63 aa4.24□□□□□ -1.73
HDAC6-228ENST00000486227 KRTAP9-8Q9BYQ0 159 aa4.24□□□□□ -1.73
HDAC6-228ENST00000486227 PKHD1L1Q86WI1 4243 aa4.22□□□□□ -1.73
HDAC6-228ENST00000486227 KRTAP19-5Q3LI72 72 aa4.19□□□□□ -1.74
HDAC6-228ENST00000486227 KRTAP19-2Q3LHN2 52 aa4.18□□□□□ -1.74
HDAC6-228ENST00000486227 MT1BP07438 61 aa4.17□□□□□ -1.74
HDAC6-228ENST00000486227 KRTAP10-7P60409 375 aaPredicted RBP4.16□□□□□ -1.74
HDAC6-228ENST00000486227 MT1XP80297 61 aa4.14□□□□□ -1.75
HDAC6-228ENST00000486227 MUC17Q685J3 4493 aa4.12□□□□□ -1.75
HDAC6-228ENST00000486227 KRTAP10-5P60370 271 aa4.11□□□□□ -1.75
HDAC6-228ENST00000486227 KRTAP9-3Q9BYQ3 159 aa4.11□□□□□ -1.75
HDAC6-228ENST00000486227 FLGP20930 4061 aaPredicted RBP4.06□□□□□ -1.76
HDAC6-228ENST00000486227 LCE3CQ5T5A8 94 aa4.05□□□□□ -1.76
HDAC6-228ENST00000486227 KRTAP19-4Q3LI73 84 aa4.03□□□□□ -1.76
HDAC6-228ENST00000486227 SPRR2EP22531 72 aa4.03□□□□□ -1.76
HDAC6-228ENST00000486227 SPRR2BP35325 72 aa4.03□□□□□ -1.76
HDAC6-228ENST00000486227 SPRR2AP35326 72 aa4.03□□□□□ -1.76
HDAC6-228ENST00000486227 RNF213Q63HN8 5207 aa4.02□□□□□ -1.77
HDAC6-228ENST00000486227 KRTAP4-8A0A0G2JLE6 195 aa3.99□□□□□ -1.77
HDAC6-228ENST00000486227 KRTAP4-8Q9BYQ9 185 aa3.99□□□□□ -1.77
HDAC6-228ENST00000486227 FAT4Q6V0I7 4981 aa3.98□□□□□ -1.77
HDAC6-228ENST00000486227 UBR4Q5T4S7 5183 aa3.97□□□□□ -1.77
HDAC6-228ENST00000486227 LCE2BO14633 110 aa3.97□□□□□ -1.77
HDAC6-228ENST00000486227 MUC2Q02817 5179 aa3.92□□□□□ -1.78
HDAC6-228ENST00000486227 HMCN2Q8NDA2 5059 aa3.91□□□□□ -1.78
HDAC6-228ENST00000486227 SPRR2DP22532 72 aa3.9□□□□□ -1.78
HDAC6-228ENST00000486227 FSIP2Q5CZC0 6907 aa3.87□□□□□ -1.79
HDAC6-228ENST00000486227 KRTAP9-2Q9BYQ4 174 aa3.85□□□□□ -1.79
HDAC6-228ENST00000486227 MT1GP13640 62 aa3.83□□□□□ -1.8
HDAC6-228ENST00000486227 LCE2AQ5TA79 106 aaPredicted RBP3.79□□□□□ -1.8
HDAC6-228ENST00000486227 KRTAP12-4P60329 112 aa3.75□□□□□ -1.81
HDAC6-228ENST00000486227 KRTAP19-6Q3LI70 58 aa3.73□□□□□ -1.81
HDAC6-228ENST00000486227 KRTAP4-7Q9BYR0 210 aa3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms