RNA–Protein interactions for RNA: ENST00000483117.1

LAPTM4A-202, Transcript of lysosomal protein transmembrane 4 alpha, humanhuman

TSL 2

Gene LAPTM4A, Length 487 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LAPTM4A-202ENST00000483117 SSPOA2VEC9 5147 aa0.46□□□□□ -2.34
LAPTM4A-202ENST00000483117 KNL1Q8NG31 2342 aa0.46□□□□□ -2.34
LAPTM4A-202ENST00000483117 CRYBG3Q68DQ2 2970 aa0.45□□□□□ -2.34
LAPTM4A-202ENST00000483117 SAMD9LQ8IVG5 1584 aa0.45□□□□□ -2.34
LAPTM4A-202ENST00000483117 VPS13CQ709C8 3753 aa0.45□□□□□ -2.34
LAPTM4A-202ENST00000483117 KMT2AQ03164 3969 aa0.45□□□□□ -2.34
LAPTM4A-202ENST00000483117 HMCN2Q8NDA2 5059 aa0.45□□□□□ -2.34
LAPTM4A-202ENST00000483117 MACF1Q9UPN3 7388 aaKnown RBP0.45□□□□□ -2.34
LAPTM4A-202ENST00000483117 SYNE2Q8WXH0 6885 aaKnown RBP0.45□□□□□ -2.34
LAPTM4A-202ENST00000483117 DSPP15924 2871 aaKnown RBP0.45□□□□□ -2.34
LAPTM4A-202ENST00000483117 TGP01266 2768 aa0.45□□□□□ -2.34
LAPTM4A-202ENST00000483117 OTOGQ6ZRI0 2925 aa0.44□□□□□ -2.34
LAPTM4A-202ENST00000483117 ITPR2Q14571 2701 aa0.44□□□□□ -2.34
LAPTM4A-202ENST00000483117 TOP2AP11388 1531 aaKnown RBP0.44□□□□□ -2.34
LAPTM4A-202ENST00000483117 C9orf92A6NGG3 77 aa0.44□□□□□ -2.34
LAPTM4A-202ENST00000483117 PRM1P04553 51 aa0.44□□□□□ -2.34
LAPTM4A-202ENST00000483117 CUBNO60494 3623 aa0.44□□□□□ -2.34
LAPTM4A-202ENST00000483117 NSD1Q96L73 2696 aaPredicted RBP0.44□□□□□ -2.34
LAPTM4A-202ENST00000483117 MYCBP2O75592 4640 aa0.44□□□□□ -2.34
LAPTM4A-202ENST00000483117 FSIP2Q5CZC0 6907 aa0.44□□□□□ -2.34
LAPTM4A-202ENST00000483117 TENM2Q9NT68 2774 aa0.44□□□□□ -2.34
LAPTM4A-202ENST00000483117 HIVEP1P15822 2718 aa0.44□□□□□ -2.34
LAPTM4A-202ENST00000483117 PRRC2CQ9Y520 2896 aaKnown RBP0.43□□□□□ -2.34
LAPTM4A-202ENST00000483117 AKAP13Q12802 2813 aa0.43□□□□□ -2.34
LAPTM4A-202ENST00000483117 HECTD4Q9Y4D8 3996 aa0.43□□□□□ -2.34
LAPTM4A-202ENST00000483117 CSMD2Q7Z408 3487 aa0.43□□□□□ -2.34
LAPTM4A-202ENST00000483117 LRBAP50851 2863 aa0.43□□□□□ -2.34
LAPTM4A-202ENST00000483117 DEFB131AP59861 70 aa0.43□□□□□ -2.34
LAPTM4A-202ENST00000483117 KRTAP21-1Q3LI58 79 aa0.43□□□□□ -2.34
LAPTM4A-202ENST00000483117 DMXL2Q8TDJ6 3036 aa0.43□□□□□ -2.34
LAPTM4A-202ENST00000483117 WNK1Q9H4A3 2382 aa0.43□□□□□ -2.34
LAPTM4A-202ENST00000483117 MGAM2Q2M2H8 2515 aa0.43□□□□□ -2.34
LAPTM4A-202ENST00000483117 CMYA5Q8N3K9 4069 aa0.43□□□□□ -2.34
LAPTM4A-202ENST00000483117 ADGRG4Q8IZF6 3080 aa0.43□□□□□ -2.34
LAPTM4A-202ENST00000483117 NIPBLQ6KC79 2804 aaeCLIP0.42□□□□□ -2.34
LAPTM4A-202ENST00000483117 LRP1BQ9NZR2 4599 aa0.42□□□□□ -2.34
LAPTM4A-202ENST00000483117 MUC5ACP98088 5654 aa0.42□□□□□ -2.34
LAPTM4A-202ENST00000483117 IGLV5-48A0A075B6I7 105 aa0.42□□□□□ -2.34
LAPTM4A-202ENST00000483117 WFDC10BQ8IUB3 73 aa0.42□□□□□ -2.34
LAPTM4A-202ENST00000483117 CHD7Q9P2D1 2997 aa0.42□□□□□ -2.34
LAPTM4A-202ENST00000483117 MXRA5Q9NR99 2828 aa0.42□□□□□ -2.34
LAPTM4A-202ENST00000483117 CSPG4Q6UVK1 2322 aa0.42□□□□□ -2.34
LAPTM4A-202ENST00000483117 ANK3Q12955 4377 aaKnown RBP0.42□□□□□ -2.34
LAPTM4A-202ENST00000483117 SVEP1Q4LDE5 3571 aa0.41□□□□□ -2.34
LAPTM4A-202ENST00000483117 DYNC1H1Q14204 4646 aaKnown RBP0.41□□□□□ -2.34
LAPTM4A-202ENST00000483117 FAT2Q9NYQ8 4349 aa0.41□□□□□ -2.34
LAPTM4A-202ENST00000483117 PLECQ15149 4684 aaKnown RBP0.41□□□□□ -2.34
LAPTM4A-202ENST00000483117 DNAH7Q8WXX0 4024 aa0.41□□□□□ -2.34
LAPTM4A-202ENST00000483117 HUWE1Q7Z6Z7 4374 aaKnown RBP0.41□□□□□ -2.34
LAPTM4A-202ENST00000483117 NDUFA1O15239 70 aa0.41□□□□□ -2.34
LAPTM4A-202ENST00000483117 SPRR2DP22532 72 aa0.41□□□□□ -2.34
LAPTM4A-202ENST00000483117 TFF3Q07654 80 aa0.41□□□□□ -2.34
LAPTM4A-202ENST00000483117 KAAG1Q9UBP8 84 aa0.41□□□□□ -2.34
LAPTM4A-202ENST00000483117 PKHD1P08F94 4074 aa0.41□□□□□ -2.34
LAPTM4A-202ENST00000483117 NBASA2RRP1 2371 aa0.41□□□□□ -2.34
LAPTM4A-202ENST00000483117 TRRAPQ9Y4A5 3859 aa0.41□□□□□ -2.34
LAPTM4A-202ENST00000483117 ATMQ13315 3056 aa0.41□□□□□ -2.34
LAPTM4A-202ENST00000483117 ACANP16112 2415 aa0.4□□□□□ -2.34
LAPTM4A-202ENST00000483117 DNAH10Q8IVF4 4471 aa0.4□□□□□ -2.35
LAPTM4A-202ENST00000483117 TNXBP22105 4242 aa0.4□□□□□ -2.35
LAPTM4A-202ENST00000483117 NFAT5O94916 1531 aa0.4□□□□□ -2.35
LAPTM4A-202ENST00000483117 DNAH9Q9NYC9 4486 aa0.4□□□□□ -2.35
LAPTM4A-202ENST00000483117 HSPG2P98160 4391 aa0.39□□□□□ -2.35
LAPTM4A-202ENST00000483117 MAP1AP78559 2803 aaPredicted RBP0.39□□□□□ -2.35
LAPTM4A-202ENST00000483117 CLTCL1P53675 1640 aa0.39□□□□□ -2.35
LAPTM4A-202ENST00000483117 MGAQ8IWI9 3026 aa0.39□□□□□ -2.35
LAPTM4A-202ENST00000483117 FAT1Q14517 4588 aa0.39□□□□□ -2.35
LAPTM4A-202ENST00000483117 A8MTW9 85 aa0.39□□□□□ -2.35
LAPTM4A-202ENST00000483117 SPRR2BP35325 72 aa0.39□□□□□ -2.35
LAPTM4A-202ENST00000483117 PKHD1L1Q86WI1 4243 aa0.39□□□□□ -2.35
LAPTM4A-202ENST00000483117 PKD1P98161 4303 aa0.39□□□□□ -2.35
LAPTM4A-202ENST00000483117 DCHS2Q6V1P9 2916 aa0.39□□□□□ -2.35
LAPTM4A-202ENST00000483117 LRP1Q07954 4544 aaKnown RBP0.39□□□□□ -2.35
LAPTM4A-202ENST00000483117 SONP18583 2426 aaKnown RBP0.38□□□□□ -2.35
LAPTM4A-202ENST00000483117 DMBT1Q9UGM3 2413 aaPredicted RBP0.38□□□□□ -2.35
LAPTM4A-202ENST00000483117 CENPEQ02224 2701 aa0.38□□□□□ -2.35
LAPTM4A-202ENST00000483117 DSTQ03001 7570 aaKnown RBP0.38□□□□□ -2.35
LAPTM4A-202ENST00000483117 M0QY20 66 aa0.38□□□□□ -2.35
LAPTM4A-202ENST00000483117 DNAH11Q96DT5 4516 aa0.38□□□□□ -2.35
LAPTM4A-202ENST00000483117 LYSTQ99698 3801 aa0.38□□□□□ -2.35
LAPTM4A-202ENST00000483117 STAB2Q8WWQ8 2551 aa0.38□□□□□ -2.35
LAPTM4A-202ENST00000483117 KMT2DO14686 5537 aa0.38□□□□□ -2.35
LAPTM4A-202ENST00000483117 DNAH5Q8TE73 4624 aa0.37□□□□□ -2.35
LAPTM4A-202ENST00000483117 USH2AO75445 5202 aa0.37□□□□□ -2.35
LAPTM4A-202ENST00000483117 LAMA1P25391 3075 aa0.37□□□□□ -2.35
LAPTM4A-202ENST00000483117 APC2O95996 2303 aa0.37□□□□□ -2.35
LAPTM4A-202ENST00000483117 MUC12Q9UKN1 5478 aa0.37□□□□□ -2.35
LAPTM4A-202ENST00000483117 DNAH6Q9C0G6 4158 aa0.37□□□□□ -2.35
LAPTM4A-202ENST00000483117 APOBP04114 4563 aaKnown RBP0.37□□□□□ -2.35
LAPTM4A-202ENST00000483117 VPS13DQ5THJ4 4388 aa0.36□□□□□ -2.35
LAPTM4A-202ENST00000483117 TACC2O95359 2948 aa0.36□□□□□ -2.35
LAPTM4A-202ENST00000483117 MMP24-AS1A0A0U1RRL7 71 aa0.36□□□□□ -2.35
LAPTM4A-202ENST00000483117 LRP2P98164 4655 aa0.36□□□□□ -2.35
LAPTM4A-202ENST00000483117 KRTAP20-1Q3LI63 56 aa0.36□□□□□ -2.35
LAPTM4A-202ENST00000483117 SYNE1Q8NF91 8797 aaKnown RBP0.36□□□□□ -2.35
LAPTM4A-202ENST00000483117 STARD9Q9P2P6 4700 aa0.36□□□□□ -2.35
LAPTM4A-202ENST00000483117 DNAH3Q8TD57 4116 aa0.36□□□□□ -2.35
LAPTM4A-202ENST00000483117 LPAP08519 4548 aa0.36□□□□□ -2.35
LAPTM4A-202ENST00000483117 COL7A1Q02388 2944 aa0.35□□□□□ -2.35
LAPTM4A-202ENST00000483117 DNAH2Q9P225 4427 aa0.35□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms