RNA–Protein interactions for RNA: ENST00000483117.1

LAPTM4A-202, Transcript of lysosomal protein transmembrane 4 alpha, humanhuman

TSL 2

Gene LAPTM4A, Length 487 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LAPTM4A-202ENST00000483117 AEBP2Q6ZN18 517 aaPredicted RBP23.02■■□□□ 1.28
LAPTM4A-202ENST00000483117 CHIC1Q5VXU3 224 aa21.45■■□□□ 1.02
LAPTM4A-202ENST00000483117 SENP3Q9H4L4 574 aaPredicted RBP19.81■□□□□ 0.76
LAPTM4A-202ENST00000483117 POTEDQ86YR6 584 aa19.79■□□□□ 0.76
LAPTM4A-202ENST00000483117 PHF23Q9BUL5 403 aaPredicted RBP19.39■□□□□ 0.69
LAPTM4A-202ENST00000483117 FOXD1Q16676 465 aa18.65■□□□□ 0.58
LAPTM4A-202ENST00000483117 MSH5O43196 834 aa17.94■□□□□ 0.46
LAPTM4A-202ENST00000483117 PIAS4Q8N2W9 510 aaPredicted RBP17.09■□□□□ 0.33
LAPTM4A-202ENST00000483117 PLPPR3Q6T4P5 718 aa16.77■□□□□ 0.28
LAPTM4A-202ENST00000483117 PPP6R1Q9UPN7 881 aa16.44■□□□□ 0.22
LAPTM4A-202ENST00000483117 ADRA2BP18089 450 aa16.3■□□□□ 0.2
LAPTM4A-202ENST00000483117 CACNB1Q02641 598 aaPredicted RBP16.22■□□□□ 0.19
LAPTM4A-202ENST00000483117 DMRT2Q9Y5R5 561 aa15.51■□□□□ 0.07
LAPTM4A-202ENST00000483117 MAPK8IP2Q13387 824 aaPredicted RBP15.38■□□□□ 0.05
LAPTM4A-202ENST00000483117 POTEHQ6S545 545 aa15.23■□□□□ 0.03
LAPTM4A-202ENST00000483117 RNF39Q9H2S5 420 aa15.2■□□□□ 0.02
LAPTM4A-202ENST00000483117 DCAF8L1A6NGE4 600 aa14.93□□□□□ -0.02
LAPTM4A-202ENST00000483117 SCAF1Q9H7N4 1312 aaKnown RBP14.9□□□□□ -0.02
LAPTM4A-202ENST00000483117 C1QBPQ07021 282 aaKnown RBP14.89□□□□□ -0.03
LAPTM4A-202ENST00000483117 PPP4R3CPQ6ZMV5 832 aa14.76□□□□□ -0.05
LAPTM4A-202ENST00000483117 HOXD11P31277 338 aaPredicted RBP14.44□□□□□ -0.1
LAPTM4A-202ENST00000483117 CNKSR2Q8WXI2 1034 aa14.4□□□□□ -0.1
LAPTM4A-202ENST00000483117 RNF216Q9NWF9 866 aaPredicted RBP14.22□□□□□ -0.13
LAPTM4A-202ENST00000483117 NCBP3Q53F19 620 aaKnown RBP14.21□□□□□ -0.13
LAPTM4A-202ENST00000483117 DNAJC5BQ9UF47 199 aa14.19□□□□□ -0.14
LAPTM4A-202ENST00000483117 NPM3O75607 178 aaKnown RBP14.05□□□□□ -0.16
LAPTM4A-202ENST00000483117 KCNA4P22459 653 aa13.99□□□□□ -0.17
LAPTM4A-202ENST00000483117 DSG3P32926 999 aa13.79□□□□□ -0.2
LAPTM4A-202ENST00000483117 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.73□□□□□ -0.21
LAPTM4A-202ENST00000483117 SP7Q8TDD2 431 aaPredicted RBP13.66□□□□□ -0.22
LAPTM4A-202ENST00000483117 CAPN15O75808 1086 aa13.54□□□□□ -0.24
LAPTM4A-202ENST00000483117 SPINK5Q9NQ38 1064 aaPredicted RBP13.52□□□□□ -0.25
LAPTM4A-202ENST00000483117 CHRDL2Q6WN34 429 aa13.42□□□□□ -0.26
LAPTM4A-202ENST00000483117 SLC4A2P04920 1241 aa13.38□□□□□ -0.27
LAPTM4A-202ENST00000483117 U3KPZ7 1027 aaPredicted RBP13.36□□□□□ -0.27
LAPTM4A-202ENST00000483117 SLC4A1APQ9BWU0 796 aaKnown RBP13.22□□□□□ -0.29
LAPTM4A-202ENST00000483117 RBM42Q9BTD8 480 aaKnown RBP13.17□□□□□ -0.3
LAPTM4A-202ENST00000483117 ABCB7O75027 752 aa13.12□□□□□ -0.31
LAPTM4A-202ENST00000483117 PLSCR2Q9NRY7 297 aa13.11□□□□□ -0.31
LAPTM4A-202ENST00000483117 TRHP20396 242 aaPredicted RBP13.02□□□□□ -0.33
LAPTM4A-202ENST00000483117 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.99□□□□□ -0.33
LAPTM4A-202ENST00000483117 HNRNPUL2Q1KMD3 747 aaKnown RBP12.99□□□□□ -0.33
LAPTM4A-202ENST00000483117 MYCNP04198 464 aaPredicted RBP12.97□□□□□ -0.33
LAPTM4A-202ENST00000483117 HAX1O00165 279 aa12.95□□□□□ -0.34
LAPTM4A-202ENST00000483117 FOXD4L1Q9NU39 408 aa12.95□□□□□ -0.34
LAPTM4A-202ENST00000483117 SAMD1Q6SPF0 538 aaPredicted RBP12.94□□□□□ -0.34
LAPTM4A-202ENST00000483117 APLP2Q06481 763 aa12.93□□□□□ -0.34
LAPTM4A-202ENST00000483117 ZNF219Q9P2Y4 722 aaPredicted RBP12.92□□□□□ -0.34
LAPTM4A-202ENST00000483117 ZBTB22O15209 634 aa12.87□□□□□ -0.35
LAPTM4A-202ENST00000483117 PIP4P2Q8N4L2 257 aa12.83□□□□□ -0.36
LAPTM4A-202ENST00000483117 LHX8Q68G74 356 aa12.81□□□□□ -0.36
LAPTM4A-202ENST00000483117 EVX2Q03828 476 aa12.72□□□□□ -0.37
LAPTM4A-202ENST00000483117 ATF5Q9Y2D1 282 aaPredicted RBP12.71□□□□□ -0.37
LAPTM4A-202ENST00000483117 POLA2Q14181 598 aa12.62□□□□□ -0.39
LAPTM4A-202ENST00000483117 AKT1S1Q96B36 256 aa12.6□□□□□ -0.39
LAPTM4A-202ENST00000483117 FXR2P51116 673 aaKnown RBP eCLIP12.54□□□□□ -0.4
LAPTM4A-202ENST00000483117 ATXN8OSP0DMR3 200 aa12.49□□□□□ -0.41
LAPTM4A-202ENST00000483117 REM2Q8IYK8 340 aaPredicted RBP12.49□□□□□ -0.41
LAPTM4A-202ENST00000483117 CSRNP3Q8WYN3 585 aa12.47□□□□□ -0.41
LAPTM4A-202ENST00000483117 EHMT2Q96KQ7 1210 aa12.44□□□□□ -0.42
LAPTM4A-202ENST00000483117 PITPNM1O00562 1244 aa12.37□□□□□ -0.43
LAPTM4A-202ENST00000483117 GABBR2O75899 941 aa12.35□□□□□ -0.43
LAPTM4A-202ENST00000483117 ZBTB12Q9Y330 459 aaPredicted RBP12.31□□□□□ -0.44
LAPTM4A-202ENST00000483117 OSCARQ8IYS5 282 aa12.21□□□□□ -0.45
LAPTM4A-202ENST00000483117 C19orf67A6NJJ6 358 aa12.19□□□□□ -0.46
LAPTM4A-202ENST00000483117 FBLN2P98095 1184 aa12.14□□□□□ -0.47
LAPTM4A-202ENST00000483117 POTEMA6NI47 508 aa12.13□□□□□ -0.47
LAPTM4A-202ENST00000483117 MKRN4PQ13434 485 aaPredicted RBP12.12□□□□□ -0.47
LAPTM4A-202ENST00000483117 POTEIP0CG38 1075 aa12.09□□□□□ -0.47
LAPTM4A-202ENST00000483117 PRKAR2AP13861 404 aaKnown RBP12.04□□□□□ -0.48
LAPTM4A-202ENST00000483117 POTEGQ6S5H5 508 aa12.04□□□□□ -0.48
LAPTM4A-202ENST00000483117 PCDH10Q9P2E7 1040 aa12□□□□□ -0.49
LAPTM4A-202ENST00000483117 SPDYE2BA6NHP3 402 aa11.97□□□□□ -0.49
LAPTM4A-202ENST00000483117 SPDYE6P0CI01 402 aa11.97□□□□□ -0.49
LAPTM4A-202ENST00000483117 SPDYE2Q495Y8 402 aa11.97□□□□□ -0.49
LAPTM4A-202ENST00000483117 ZNF692Q9BU19 519 aaPredicted RBP11.9□□□□□ -0.5
LAPTM4A-202ENST00000483117 OTUD5Q96G74 571 aa11.87□□□□□ -0.51
LAPTM4A-202ENST00000483117 SSUH2Q9Y2M2 353 aa11.85□□□□□ -0.51
LAPTM4A-202ENST00000483117 PABPN1Q86U42 306 aaKnown RBP eCLIP11.74□□□□□ -0.53
LAPTM4A-202ENST00000483117 CLEC11AQ9Y240 323 aa11.74□□□□□ -0.53
LAPTM4A-202ENST00000483117 SPDYE1Q8NFV5 336 aaPredicted RBP11.72□□□□□ -0.53
LAPTM4A-202ENST00000483117 DCBLD2Q96PD2 775 aa11.71□□□□□ -0.53
LAPTM4A-202ENST00000483117 CLCN6P51797 869 aa11.67□□□□□ -0.54
LAPTM4A-202ENST00000483117 POTEB2H3BUK9 544 aa11.66□□□□□ -0.54
LAPTM4A-202ENST00000483117 SPDYE4A6NLX3 237 aa11.64□□□□□ -0.55
LAPTM4A-202ENST00000483117 CHADLQ6NUI6 762 aa11.63□□□□□ -0.55
LAPTM4A-202ENST00000483117 CD44P16070 742 aaKnown RBP11.57□□□□□ -0.56
LAPTM4A-202ENST00000483117 PRR29P0C7W0 189 aa11.55□□□□□ -0.56
LAPTM4A-202ENST00000483117 LCE2DQ5TA82 110 aaPredicted RBP11.51□□□□□ -0.57
LAPTM4A-202ENST00000483117 FAM163AQ96GL9 167 aaPredicted RBP11.41□□□□□ -0.58
LAPTM4A-202ENST00000483117 STAG3Q9UJ98 1225 aa11.41□□□□□ -0.58
LAPTM4A-202ENST00000483117 PROM2Q8N271 834 aa11.36□□□□□ -0.59
LAPTM4A-202ENST00000483117 CDAN1Q8IWY9 1227 aa11.32□□□□□ -0.6
LAPTM4A-202ENST00000483117 ZNF579Q8NAF0 562 aaKnown RBP11.32□□□□□ -0.6
LAPTM4A-202ENST00000483117 CREBZFQ9NS37 354 aa11.32□□□□□ -0.6
LAPTM4A-202ENST00000483117 FARP1Q9Y4F1 1045 aaPredicted RBP11.32□□□□□ -0.6
LAPTM4A-202ENST00000483117 GALR2O43603 387 aaPredicted RBP11.3□□□□□ -0.6
LAPTM4A-202ENST00000483117 FKBP8Q14318 412 aa11.3□□□□□ -0.6
LAPTM4A-202ENST00000483117 POTEJP0CG39 1038 aa11.26□□□□□ -0.61
LAPTM4A-202ENST00000483117 MAMSTRQ6ZN01 415 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms