RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 KRTAP3-3Q9BYR6 98 aa9.66□□□□□ -0.86
CCDC88B-207ENST00000479965 SACSQ9NZJ4 4579 aa9.64□□□□□ -0.87
CCDC88B-207ENST00000479965 KRTAP3-2Q9BYR7 98 aa9.62□□□□□ -0.87
CCDC88B-207ENST00000479965 DNHD1Q96M86 4753 aa9.62□□□□□ -0.87
CCDC88B-207ENST00000479965 S4R3F8 94 aa9.6□□□□□ -0.87
CCDC88B-207ENST00000479965 KRTAP12-2P59991 146 aa9.57□□□□□ -0.88
CCDC88B-207ENST00000479965 KRTAP15-1Q3LI76 137 aa9.56□□□□□ -0.88
CCDC88B-207ENST00000479965 DYNC1H1Q14204 4646 aaKnown RBP9.52□□□□□ -0.89
CCDC88B-207ENST00000479965 KRTAP10-8P60410 259 aa9.51□□□□□ -0.89
CCDC88B-207ENST00000479965 PKHD1L1Q86WI1 4243 aa9.46□□□□□ -0.9
CCDC88B-207ENST00000479965 MYCBP2O75592 4640 aa9.41□□□□□ -0.9
CCDC88B-207ENST00000479965 KRTAP12-1P59990 96 aa9.4□□□□□ -0.9
CCDC88B-207ENST00000479965 HSPG2P98160 4391 aa9.4□□□□□ -0.91
CCDC88B-207ENST00000479965 KRTAP10-4P60372 401 aaPredicted RBP9.37□□□□□ -0.91
CCDC88B-207ENST00000479965 APOBP04114 4563 aaKnown RBP9.37□□□□□ -0.91
CCDC88B-207ENST00000479965 LRP1Q07954 4544 aaKnown RBP9.32□□□□□ -0.92
CCDC88B-207ENST00000479965 FAT3Q8TDW7 4589 aa9.29□□□□□ -0.92
CCDC88B-207ENST00000479965 XP32Q5T750 250 aa9.28□□□□□ -0.92
CCDC88B-207ENST00000479965 M0QZ58 72 aa9.15□□□□□ -0.95
CCDC88B-207ENST00000479965 LPAP08519 4548 aa9.12□□□□□ -0.95
CCDC88B-207ENST00000479965 A0A1B0GVY2 172 aa9.11□□□□□ -0.95
CCDC88B-207ENST00000479965 TNXBP22105 4242 aa9.08□□□□□ -0.96
CCDC88B-207ENST00000479965 PLAC4Q8WY50 150 aa9.02□□□□□ -0.97
CCDC88B-207ENST00000479965 R4GN34 69 aa9.01□□□□□ -0.97
CCDC88B-207ENST00000479965 KMT2CQ8NEZ4 4911 aaKnown RBP8.98□□□□□ -0.97
CCDC88B-207ENST00000479965 Q5VSD8 79 aa8.96□□□□□ -0.97
CCDC88B-207ENST00000479965 LRP2P98164 4655 aa8.94□□□□□ -0.98
CCDC88B-207ENST00000479965 A0A0A0MQY5 61 aa8.94□□□□□ -0.98
CCDC88B-207ENST00000479965 LUZP6Q538Z0 58 aa8.91□□□□□ -0.98
CCDC88B-207ENST00000479965 LORP23490 312 aaPredicted RBP8.78□□□□□ -1
CCDC88B-207ENST00000479965 RYR2Q92736 4967 aa8.76□□□□□ -1.01
CCDC88B-207ENST00000479965 MT1HL1P0DM35 61 aa8.68□□□□□ -1.02
CCDC88B-207ENST00000479965 CAMK2N1Q7Z7J9 78 aa8.68□□□□□ -1.02
CCDC88B-207ENST00000479965 KRTAP17-1Q9BYP8 105 aa8.65□□□□□ -1.02
CCDC88B-207ENST00000479965 RYR1P21817 5038 aa8.6□□□□□ -1.03
CCDC88B-207ENST00000479965 KIAA1109Q2LD37 5005 aa8.58□□□□□ -1.04
CCDC88B-207ENST00000479965 PP632Q6XCG6 107 aa8.55□□□□□ -1.04
CCDC88B-207ENST00000479965 RYR3Q15413 4870 aa8.49□□□□□ -1.05
CCDC88B-207ENST00000479965 ABCA13Q86UQ4 5058 aa8.48□□□□□ -1.05
CCDC88B-207ENST00000479965 SEC61BP60468 96 aaKnown RBP8.36□□□□□ -1.07
CCDC88B-207ENST00000479965 KRTAP4-1Q9BYQ7 146 aa8.32□□□□□ -1.08
CCDC88B-207ENST00000479965 MUC17Q685J3 4493 aa8.3□□□□□ -1.08
CCDC88B-207ENST00000479965 TNP1P09430 55 aa8.29□□□□□ -1.08
CCDC88B-207ENST00000479965 MUC2Q02817 5179 aa8.19□□□□□ -1.1
CCDC88B-207ENST00000479965 KRTAP4-5Q9BYR2 181 aa8.12□□□□□ -1.11
CCDC88B-207ENST00000479965 KRTAP21-3Q3LHN1 58 aa8.12□□□□□ -1.11
CCDC88B-207ENST00000479965 SPRR5A0A1B0GTR4 108 aa8.07□□□□□ -1.12
CCDC88B-207ENST00000479965 EPPK1P58107 5090 aaKnown RBP8.07□□□□□ -1.12
CCDC88B-207ENST00000479965 KRTAP19-2Q3LHN2 52 aa8.05□□□□□ -1.12
CCDC88B-207ENST00000479965 J3QL48 77 aa7.98□□□□□ -1.13
CCDC88B-207ENST00000479965 KRTAP23-1A1A580 65 aa7.97□□□□□ -1.13
CCDC88B-207ENST00000479965 FLGP20930 4061 aaPredicted RBP7.87□□□□□ -1.15
CCDC88B-207ENST00000479965 PCLOQ9Y6V0 5065 aa7.86□□□□□ -1.15
CCDC88B-207ENST00000479965 LCE3AQ5TA76 89 aa7.81□□□□□ -1.16
CCDC88B-207ENST00000479965 PRO2289Q9P1D8 64 aa7.76□□□□□ -1.17
CCDC88B-207ENST00000479965 FAT4Q6V0I7 4981 aa7.75□□□□□ -1.17
CCDC88B-207ENST00000479965 HERC2O95714 4834 aa7.71□□□□□ -1.17
CCDC88B-207ENST00000479965 HERC1Q15751 4861 aa7.69□□□□□ -1.18
CCDC88B-207ENST00000479965 M0R2T5 61 aa7.62□□□□□ -1.19
CCDC88B-207ENST00000479965 KRTAP19-1Q8IUB9 90 aa7.61□□□□□ -1.19
CCDC88B-207ENST00000479965 SPRR2GQ9BYE4 73 aa7.6□□□□□ -1.19
CCDC88B-207ENST00000479965 INE1O15225 51 aa7.56□□□□□ -1.2
CCDC88B-207ENST00000479965 BIRC6Q9NR09 4857 aa7.53□□□□□ -1.2
CCDC88B-207ENST00000479965 KRTAP10-10P60014 251 aa7.45□□□□□ -1.22
CCDC88B-207ENST00000479965 KRTAP8-1Q8IUC2 63 aa7.45□□□□□ -1.22
CCDC88B-207ENST00000479965 LCE2CQ5TA81 110 aa7.42□□□□□ -1.22
CCDC88B-207ENST00000479965 HMCN2Q8NDA2 5059 aa7.41□□□□□ -1.22
CCDC88B-207ENST00000479965 KRTAP12-3P60328 96 aa7.38□□□□□ -1.23
CCDC88B-207ENST00000479965 RNF213Q63HN8 5207 aa7.33□□□□□ -1.24
CCDC88B-207ENST00000479965 MT1FP04733 61 aa7.33□□□□□ -1.24
CCDC88B-207ENST00000479965 UBR4Q5T4S7 5183 aa7.31□□□□□ -1.24
CCDC88B-207ENST00000479965 KRTAP10-12P60413 245 aa7.3□□□□□ -1.24
CCDC88B-207ENST00000479965 MT2AP02795 61 aa7.27□□□□□ -1.25
CCDC88B-207ENST00000479965 KRTAP10-5P60370 271 aa7.24□□□□□ -1.25
CCDC88B-207ENST00000479965 MT1HP80294 61 aa7.24□□□□□ -1.25
CCDC88B-207ENST00000479965 MT1XP80297 61 aa7.21□□□□□ -1.25
CCDC88B-207ENST00000479965 KRTAP10-7P60409 375 aaPredicted RBP7.16□□□□□ -1.26
CCDC88B-207ENST00000479965 MT1BP07438 61 aa7.13□□□□□ -1.27
CCDC88B-207ENST00000479965 KRTAP19-8Q3LI54 63 aa7.12□□□□□ -1.27
CCDC88B-207ENST00000479965 KRTAP9-8Q9BYQ0 159 aa7.12□□□□□ -1.27
CCDC88B-207ENST00000479965 KMT2DO14686 5537 aa6.95□□□□□ -1.3
CCDC88B-207ENST00000479965 KRTAP19-5Q3LI72 72 aa6.93□□□□□ -1.3
CCDC88B-207ENST00000479965 LCE3CQ5T5A8 94 aa6.93□□□□□ -1.3
CCDC88B-207ENST00000479965 USH2AO75445 5202 aa6.79□□□□□ -1.32
CCDC88B-207ENST00000479965 KRTAP9-6A8MVA2 160 aa6.78□□□□□ -1.32
CCDC88B-207ENST00000479965 KRTAP9-3Q9BYQ3 159 aa6.77□□□□□ -1.33
CCDC88B-207ENST00000479965 KRTAP4-8A0A0G2JLE6 195 aa6.69□□□□□ -1.34
CCDC88B-207ENST00000479965 KRTAP4-8Q9BYQ9 185 aa6.69□□□□□ -1.34
CCDC88B-207ENST00000479965 KRTAP4-7Q9BYR0 210 aa6.66□□□□□ -1.34
CCDC88B-207ENST00000479965 KRTAP2-3P0C7H8 128 aa6.56□□□□□ -1.36
CCDC88B-207ENST00000479965 KRTAP2-4Q9BYR9 128 aa6.56□□□□□ -1.36
CCDC88B-207ENST00000479965 KRTAP2-1Q9BYU5 128 aa6.56□□□□□ -1.36
CCDC88B-207ENST00000479965 LCE2BO14633 110 aa6.51□□□□□ -1.37
CCDC88B-207ENST00000479965 KRTAP19-7Q3SYF9 63 aa6.41□□□□□ -1.38
CCDC88B-207ENST00000479965 MT1LQ93083 61 aa6.27□□□□□ -1.41
CCDC88B-207ENST00000479965 MT1EP04732 61 aa6.18□□□□□ -1.42
CCDC88B-207ENST00000479965 LOC100996750A0A140TA64 210 aa6.18□□□□□ -1.42
CCDC88B-207ENST00000479965 CRCT1Q9UGL9 99 aa6.14□□□□□ -1.43
CCDC88B-207ENST00000479965 KRTAP12-4P60329 112 aa6.12□□□□□ -1.43
CCDC88B-207ENST00000479965 KRTAP4-3Q9BYR4 195 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 370 ms