RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 KRTAP10-8P60410 259 aa6.88□□□□□ -1.31
USP42-206ENST00000479544 KRTAP12-2P59991 146 aa6.88□□□□□ -1.31
USP42-206ENST00000479544 SEC61BP60468 96 aaKnown RBP6.85□□□□□ -1.31
USP42-206ENST00000479544 PLAC4Q8WY50 150 aa6.84□□□□□ -1.31
USP42-206ENST00000479544 HERC2O95714 4834 aa6.84□□□□□ -1.31
USP42-206ENST00000479544 KIAA1109Q2LD37 5005 aa6.84□□□□□ -1.31
USP42-206ENST00000479544 M0R2T5 61 aa6.83□□□□□ -1.32
USP42-206ENST00000479544 DNAH11Q96DT5 4516 aa6.82□□□□□ -1.32
USP42-206ENST00000479544 DNAH7Q8WXX0 4024 aa6.8□□□□□ -1.32
USP42-206ENST00000479544 KRTAP10-6P60371 365 aaPredicted RBP6.77□□□□□ -1.33
USP42-206ENST00000479544 HYDINQ4G0P3 5121 aa6.74□□□□□ -1.33
USP42-206ENST00000479544 KRTAP12-1P59990 96 aa6.72□□□□□ -1.33
USP42-206ENST00000479544 VPS13DQ5THJ4 4388 aa6.71□□□□□ -1.34
USP42-206ENST00000479544 LYSTQ99698 3801 aa6.67□□□□□ -1.34
USP42-206ENST00000479544 DNAH8Q96JB1 4490 aa6.65□□□□□ -1.34
USP42-206ENST00000479544 RYR1P21817 5038 aa6.65□□□□□ -1.35
USP42-206ENST00000479544 PCLOQ9Y6V0 5065 aa6.62□□□□□ -1.35
USP42-206ENST00000479544 DYNC1H1Q14204 4646 aaKnown RBP6.62□□□□□ -1.35
USP42-206ENST00000479544 DNAH6Q9C0G6 4158 aa6.59□□□□□ -1.35
USP42-206ENST00000479544 KRTAP3-2Q9BYR7 98 aa6.59□□□□□ -1.35
USP42-206ENST00000479544 DNAH17Q9UFH2 4485 aa6.59□□□□□ -1.35
USP42-206ENST00000479544 TNP1P09430 55 aa6.59□□□□□ -1.35
USP42-206ENST00000479544 KRTAP3-3Q9BYR6 98 aa6.59□□□□□ -1.36
USP42-206ENST00000479544 DNAH5Q8TE73 4624 aa6.57□□□□□ -1.36
USP42-206ENST00000479544 KMT2AQ03164 3969 aa6.57□□□□□ -1.36
USP42-206ENST00000479544 KRTAP15-1Q3LI76 137 aa6.53□□□□□ -1.36
USP42-206ENST00000479544 FAT1Q14517 4588 aa6.53□□□□□ -1.36
USP42-206ENST00000479544 LRP1BQ9NZR2 4599 aa6.53□□□□□ -1.36
USP42-206ENST00000479544 FRAS1Q86XX4 4008 aa6.51□□□□□ -1.37
USP42-206ENST00000479544 MYCBP2O75592 4640 aa6.51□□□□□ -1.37
USP42-206ENST00000479544 ABCA13Q86UQ4 5058 aa6.49□□□□□ -1.37
USP42-206ENST00000479544 PP632Q6XCG6 107 aa6.47□□□□□ -1.37
USP42-206ENST00000479544 FAT2Q9NYQ8 4349 aa6.44□□□□□ -1.38
USP42-206ENST00000479544 HECTD4Q9Y4D8 3996 aa6.43□□□□□ -1.38
USP42-206ENST00000479544 KRTAP10-4P60372 401 aaPredicted RBP6.41□□□□□ -1.38
USP42-206ENST00000479544 HSPG2P98160 4391 aa6.41□□□□□ -1.38
USP42-206ENST00000479544 DNAH2Q9P225 4427 aa6.41□□□□□ -1.38
USP42-206ENST00000479544 MT1HL1P0DM35 61 aa6.4□□□□□ -1.38
USP42-206ENST00000479544 APOBP04114 4563 aaKnown RBP6.36□□□□□ -1.39
USP42-206ENST00000479544 PKHD1P08F94 4074 aa6.36□□□□□ -1.39
USP42-206ENST00000479544 PKD1P98161 4303 aa6.26□□□□□ -1.41
USP42-206ENST00000479544 VPS13BQ7Z7G8 4022 aa6.26□□□□□ -1.41
USP42-206ENST00000479544 LORP23490 312 aaPredicted RBP6.22□□□□□ -1.41
USP42-206ENST00000479544 HERC1Q15751 4861 aa6.22□□□□□ -1.41
USP42-206ENST00000479544 FAT3Q8TDW7 4589 aa6.2□□□□□ -1.42
USP42-206ENST00000479544 KRTAP10-10P60014 251 aa6.14□□□□□ -1.43
USP42-206ENST00000479544 LRP1Q07954 4544 aaKnown RBP6.13□□□□□ -1.43
USP42-206ENST00000479544 HMCN2Q8NDA2 5059 aa5.98□□□□□ -1.45
USP42-206ENST00000479544 PKHD1L1Q86WI1 4243 aa5.96□□□□□ -1.46
USP42-206ENST00000479544 LRP2P98164 4655 aa5.92□□□□□ -1.46
USP42-206ENST00000479544 UBR4Q5T4S7 5183 aa5.91□□□□□ -1.46
USP42-206ENST00000479544 KRTAP9-2Q9BYQ4 174 aa5.88□□□□□ -1.47
USP42-206ENST00000479544 RNF213Q63HN8 5207 aa5.86□□□□□ -1.47
USP42-206ENST00000479544 KRTAP9-6A0A140TA67 174 aa5.82□□□□□ -1.48
USP42-206ENST00000479544 KRTAP4-1Q9BYQ7 146 aa5.81□□□□□ -1.48
USP42-206ENST00000479544 LCE3AQ5TA76 89 aa5.75□□□□□ -1.49
USP42-206ENST00000479544 PRO2289Q9P1D8 64 aa5.68□□□□□ -1.5
USP42-206ENST00000479544 LCE2AQ5TA79 106 aaPredicted RBP5.65□□□□□ -1.51
USP42-206ENST00000479544 CRCT1Q9UGL9 99 aa5.64□□□□□ -1.51
USP42-206ENST00000479544 TNXBP22105 4242 aa5.61□□□□□ -1.51
USP42-206ENST00000479544 KRTAP12-3P60328 96 aa5.6□□□□□ -1.51
USP42-206ENST00000479544 LPAP08519 4548 aa5.59□□□□□ -1.51
USP42-206ENST00000479544 KRTAP10-12P60413 245 aa5.59□□□□□ -1.52
USP42-206ENST00000479544 LCE2DQ5TA82 110 aaPredicted RBP5.57□□□□□ -1.52
USP42-206ENST00000479544 INE1O15225 51 aa5.57□□□□□ -1.52
USP42-206ENST00000479544 KRTAP23-1A1A580 65 aa5.49□□□□□ -1.53
USP42-206ENST00000479544 MT1HP80294 61 aa5.49□□□□□ -1.53
USP42-206ENST00000479544 FSIP2Q5CZC0 6907 aa5.49□□□□□ -1.53
USP42-206ENST00000479544 FAT4Q6V0I7 4981 aa5.48□□□□□ -1.53
USP42-206ENST00000479544 MUC2Q02817 5179 aa5.34□□□□□ -1.55
USP42-206ENST00000479544 LCE2CQ5TA81 110 aa5.31□□□□□ -1.56
USP42-206ENST00000479544 SPRR2GQ9BYE4 73 aa5.31□□□□□ -1.56
USP42-206ENST00000479544 MT2AP02795 61 aa5.29□□□□□ -1.56
USP42-206ENST00000479544 MUC17Q685J3 4493 aa5.28□□□□□ -1.56
USP42-206ENST00000479544 MT1FP04733 61 aa5.27□□□□□ -1.57
USP42-206ENST00000479544 KRTAP19-1Q8IUB9 90 aa5.25□□□□□ -1.57
USP42-206ENST00000479544 KRTAP9-7A8MTY7 169 aa5.24□□□□□ -1.57
USP42-206ENST00000479544 KRTAP8-1Q8IUC2 63 aa5.2□□□□□ -1.58
USP42-206ENST00000479544 KRTAP19-2Q3LHN2 52 aa5.19□□□□□ -1.58
USP42-206ENST00000479544 SPRR5A0A1B0GTR4 108 aa5.18□□□□□ -1.58
USP42-206ENST00000479544 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.13□□□□□ -1.59
USP42-206ENST00000479544 KRTAP10-7P60409 375 aaPredicted RBP5.12□□□□□ -1.59
USP42-206ENST00000479544 KRTAP19-5Q3LI72 72 aa5.11□□□□□ -1.59
USP42-206ENST00000479544 OBSCNQ5VST9 7968 aa5.08□□□□□ -1.6
USP42-206ENST00000479544 KRTAP10-5P60370 271 aa5.08□□□□□ -1.6
USP42-206ENST00000479544 KRTAP9-8Q9BYQ0 159 aa5.04□□□□□ -1.6
USP42-206ENST00000479544 SYNE1Q8NF91 8797 aaKnown RBP5.03□□□□□ -1.6
USP42-206ENST00000479544 LCE3CQ5T5A8 94 aa5.01□□□□□ -1.61
USP42-206ENST00000479544 MT1XP80297 61 aa5□□□□□ -1.61
USP42-206ENST00000479544 FLGP20930 4061 aaPredicted RBP5□□□□□ -1.61
USP42-206ENST00000479544 KRTAP19-8Q3LI54 63 aa4.97□□□□□ -1.61
USP42-206ENST00000479544 MT1BP07438 61 aa4.95□□□□□ -1.62
USP42-206ENST00000479544 KRTAP4-8A0A0G2JLE6 195 aa4.92□□□□□ -1.62
USP42-206ENST00000479544 KRTAP9-3Q9BYQ3 159 aa4.92□□□□□ -1.62
USP42-206ENST00000479544 KRTAP4-8Q9BYQ9 185 aa4.92□□□□□ -1.62
USP42-206ENST00000479544 LCE2BO14633 110 aa4.89□□□□□ -1.63
USP42-206ENST00000479544 KRTAP19-6Q3LI70 58 aa4.87□□□□□ -1.63
USP42-206ENST00000479544 KRTAP4-7Q9BYR0 210 aa4.84□□□□□ -1.64
USP42-206ENST00000479544 KRTAP6-3Q3LI67 103 aa4.83□□□□□ -1.64
USP42-206ENST00000479544 USH2AO75445 5202 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms