RNA–Protein interactions for RNA: ENST00000476553.1

NUP58-209, Transcript of nucleoporin 58, humanhuman

TSL 4

Gene NUP58, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP58-209ENST00000476553 PRCDQ00LT1 54 aa0.68□□□□□ -2.3
NUP58-209ENST00000476553 LINC01590Q5TEZ4 76 aa0.68□□□□□ -2.3
NUP58-209ENST00000476553 KRTAP8-1Q8IUC2 63 aa0.68□□□□□ -2.3
NUP58-209ENST00000476553 HIVEP1P15822 2718 aa0.68□□□□□ -2.3
NUP58-209ENST00000476553 USP9YO00507 2555 aaPredicted RBP0.68□□□□□ -2.3
NUP58-209ENST00000476553 HTTP42858 3142 aa0.67□□□□□ -2.3
NUP58-209ENST00000476553 MAST4O15021 2626 aa0.67□□□□□ -2.3
NUP58-209ENST00000476553 CELSR3Q9NYQ7 3312 aa0.66□□□□□ -2.3
NUP58-209ENST00000476553 ZFHX4Q86UP3 3567 aa0.66□□□□□ -2.3
NUP58-209ENST00000476553 SPTBN5Q9NRC6 3674 aaKnown RBP0.66□□□□□ -2.3
NUP58-209ENST00000476553 DEFB104AQ8WTQ1 72 aa0.65□□□□□ -2.31
NUP58-209ENST00000476553 LAMA5O15230 3695 aa0.65□□□□□ -2.31
NUP58-209ENST00000476553 FASNP49327 2511 aaKnown RBP0.64□□□□□ -2.31
NUP58-209ENST00000476553 FLNAP21333 2647 aaKnown RBP0.64□□□□□ -2.31
NUP58-209ENST00000476553 ITPR3Q14573 2671 aa0.64□□□□□ -2.31
NUP58-209ENST00000476553 SVEP1Q4LDE5 3571 aa0.64□□□□□ -2.31
NUP58-209ENST00000476553 DNAH1Q9P2D7 4330 aa0.63□□□□□ -2.31
NUP58-209ENST00000476553 TEP1Q99973 2627 aaKnown RBP0.63□□□□□ -2.31
NUP58-209ENST00000476553 TGP01266 2768 aa0.62□□□□□ -2.31
NUP58-209ENST00000476553 MAP1AP78559 2803 aaPredicted RBP0.62□□□□□ -2.31
NUP58-209ENST00000476553 SPRR2EP22531 72 aa0.61□□□□□ -2.31
NUP58-209ENST00000476553 MYO18BQ8IUG5 2567 aa0.61□□□□□ -2.31
NUP58-209ENST00000476553 TRIOO75962 3097 aa0.59□□□□□ -2.32
NUP58-209ENST00000476553 PHGR1C9JFL3 82 aa0.58□□□□□ -2.32
NUP58-209ENST00000476553 FAT1Q14517 4588 aa0.58□□□□□ -2.32
NUP58-209ENST00000476553 TLN2Q9Y4G6 2542 aa0.58□□□□□ -2.32
NUP58-209ENST00000476553 H3BSH0 61 aa0.57□□□□□ -2.32
NUP58-209ENST00000476553 DNAH10Q8IVF4 4471 aa0.57□□□□□ -2.32
NUP58-209ENST00000476553 K7EIM0 57 aa0.56□□□□□ -2.32
NUP58-209ENST00000476553 SPRR2FQ96RM1 72 aa0.56□□□□□ -2.32
NUP58-209ENST00000476553 WDR87Q6ZQQ6 2873 aa0.56□□□□□ -2.32
NUP58-209ENST00000476553 MXRA5Q9NR99 2828 aa0.55□□□□□ -2.32
NUP58-209ENST00000476553 LRP2P98164 4655 aa0.55□□□□□ -2.32
NUP58-209ENST00000476553 SMR3BP02814 79 aaPredicted RBP0.53□□□□□ -2.32
NUP58-209ENST00000476553 KRTAP19-5Q3LI72 72 aa0.53□□□□□ -2.32
NUP58-209ENST00000476553 USP9XQ93008 2570 aaPredicted RBP0.52□□□□□ -2.33
NUP58-209ENST00000476553 ITPR1Q14643 2758 aa0.51□□□□□ -2.33
NUP58-209ENST00000476553 MUC5BQ9HC84 5762 aaPredicted RBP0.51□□□□□ -2.33
NUP58-209ENST00000476553 LAMA1P25391 3075 aa0.51□□□□□ -2.33
NUP58-209ENST00000476553 AHNAKQ09666 5890 aaKnown RBP0.5□□□□□ -2.33
NUP58-209ENST00000476553 MGAM2Q2M2H8 2515 aa0.49□□□□□ -2.33
NUP58-209ENST00000476553 RELNP78509 3460 aa0.49□□□□□ -2.33
NUP58-209ENST00000476553 PLECQ15149 4684 aaKnown RBP0.48□□□□□ -2.33
NUP58-209ENST00000476553 CSMD1Q96PZ7 3565 aa0.47□□□□□ -2.33
NUP58-209ENST00000476553 NBEAL1Q6ZS30 2694 aa0.47□□□□□ -2.33
NUP58-209ENST00000476553 STAB2Q8WWQ8 2551 aa0.46□□□□□ -2.34
NUP58-209ENST00000476553 GPR98Q8WXG9 6306 aa0.45□□□□□ -2.34
NUP58-209ENST00000476553 CMYA5Q8N3K9 4069 aa0.43□□□□□ -2.34
NUP58-209ENST00000476553 HERC1Q15751 4861 aa0.43□□□□□ -2.34
NUP58-209ENST00000476553 MGAQ8IWI9 3026 aa0.43□□□□□ -2.34
NUP58-209ENST00000476553 TMEM167AQ8TBQ9 72 aa0.43□□□□□ -2.34
NUP58-209ENST00000476553 MDN1Q9NU22 5596 aa0.43□□□□□ -2.34
NUP58-209ENST00000476553 CFAP54Q96N23 3096 aa0.42□□□□□ -2.34
NUP58-209ENST00000476553 DMXL2Q8TDJ6 3036 aa0.42□□□□□ -2.34
NUP58-209ENST00000476553 ADGRG4Q8IZF6 3080 aa0.41□□□□□ -2.34
NUP58-209ENST00000476553 RHPN1-AS1Q9BWJ2 59 aa0.41□□□□□ -2.34
NUP58-209ENST00000476553 DYNC1H1Q14204 4646 aaKnown RBP0.4□□□□□ -2.35
NUP58-209ENST00000476553 LAMA3Q16787 3333 aa0.39□□□□□ -2.35
NUP58-209ENST00000476553 DEFB1P60022 68 aa0.39□□□□□ -2.35
NUP58-209ENST00000476553 MUC5ACP98088 5654 aa0.35□□□□□ -2.35
NUP58-209ENST00000476553 DNAH17Q9UFH2 4485 aa0.34□□□□□ -2.36
NUP58-209ENST00000476553 TRRAPQ9Y4A5 3859 aa0.33□□□□□ -2.36
NUP58-209ENST00000476553 SPTAN1Q13813 2472 aaKnown RBP0.32□□□□□ -2.36
NUP58-209ENST00000476553 C5orf42Q9H799 3197 aa0.31□□□□□ -2.36
NUP58-209ENST00000476553 KMT2DO14686 5537 aa0.3□□□□□ -2.36
NUP58-209ENST00000476553 SMG1Q96Q15 3661 aaKnown RBP0.3□□□□□ -2.36
NUP58-209ENST00000476553 H3BUX3 64 aa0.3□□□□□ -2.36
NUP58-209ENST00000476553 A0A096LNI7 61 aa0.28□□□□□ -2.36
NUP58-209ENST00000476553 DEFB136Q30KP8 78 aa0.28□□□□□ -2.36
NUP58-209ENST00000476553 CEP250Q9BV73 2442 aa0.28□□□□□ -2.36
NUP58-209ENST00000476553 DNAH5Q8TE73 4624 aa0.28□□□□□ -2.36
NUP58-209ENST00000476553 ATMQ13315 3056 aa0.28□□□□□ -2.36
NUP58-209ENST00000476553 TEX15Q9BXT5 2789 aa0.28□□□□□ -2.37
NUP58-209ENST00000476553 PCLOQ9Y6V0 5065 aa0.27□□□□□ -2.37
NUP58-209ENST00000476553 RPL39P5Q59GN2 51 aa0.27□□□□□ -2.37
NUP58-209ENST00000476553 SSPOA2VEC9 5147 aa0.27□□□□□ -2.37
NUP58-209ENST00000476553 LRBAP50851 2863 aa0.27□□□□□ -2.37
NUP58-209ENST00000476553 MUC17Q685J3 4493 aa0.26□□□□□ -2.37
NUP58-209ENST00000476553 MACF1Q9UPN3 7388 aaKnown RBP0.25□□□□□ -2.37
NUP58-209ENST00000476553 MT1HP80294 61 aa0.25□□□□□ -2.37
NUP58-209ENST00000476553 SPRR2GQ9BYE4 73 aa0.25□□□□□ -2.37
NUP58-209ENST00000476553 NIPBLQ6KC79 2804 aaeCLIP0.24□□□□□ -2.37
NUP58-209ENST00000476553 DOPEY1Q5JWR5 2465 aa0.24□□□□□ -2.37
NUP58-209ENST00000476553 SYNE2Q8WXH0 6885 aaKnown RBP0.23□□□□□ -2.37
NUP58-209ENST00000476553 FSIP2Q5CZC0 6907 aa0.22□□□□□ -2.37
NUP58-209ENST00000476553 STARD9Q9P2P6 4700 aa0.22□□□□□ -2.37
NUP58-209ENST00000476553 DEFB124Q8NES8 71 aa0.21□□□□□ -2.38
NUP58-209ENST00000476553 KMT2CQ8NEZ4 4911 aaKnown RBP0.2□□□□□ -2.38
NUP58-209ENST00000476553 MUC2Q02817 5179 aa0.19□□□□□ -2.38
NUP58-209ENST00000476553 MT1EP04732 61 aa0.19□□□□□ -2.38
NUP58-209ENST00000476553 DEFB108AA8MXU0 73 aa0.18□□□□□ -2.38
NUP58-209ENST00000476553 PRUNE2Q8WUY3 3088 aa0.17□□□□□ -2.38
NUP58-209ENST00000476553 SRCAPQ6ZRS2 3230 aa0.16□□□□□ -2.38
NUP58-209ENST00000476553 FRYLO94915 3013 aa0.15□□□□□ -2.39
NUP58-209ENST00000476553 DMDP11532 3685 aa0.14□□□□□ -2.39
NUP58-209ENST00000476553 DNAH12Q6ZR08 3092 aa0.14□□□□□ -2.39
NUP58-209ENST00000476553 USH2AO75445 5202 aa0.14□□□□□ -2.39
NUP58-209ENST00000476553 CFAP46Q8IYW2 2715 aa0.12□□□□□ -2.39
NUP58-209ENST00000476553 HTN1P15515 57 aa0.12□□□□□ -2.39
NUP58-209ENST00000476553 VPS13CQ709C8 3753 aa0.12□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms