RNA–Protein interactions for RNA: ENST00000476395.1

VAPB-205, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-205ENST00000476395 SSBP3-AS1Q7Z2R9 100 aa4.66□□□□□ -1.66
VAPB-205ENST00000476395 TYMSOSQ8TAI1 123 aa4.66□□□□□ -1.66
VAPB-205ENST00000476395 RYR2Q92736 4967 aa4.66□□□□□ -1.66
VAPB-205ENST00000476395 KRTAP10-1P60331 282 aa4.65□□□□□ -1.66
VAPB-205ENST00000476395 DYNC1H1Q14204 4646 aaKnown RBP4.65□□□□□ -1.67
VAPB-205ENST00000476395 FAT1Q14517 4588 aa4.62□□□□□ -1.67
VAPB-205ENST00000476395 CAMK2N1Q7Z7J9 78 aa4.61□□□□□ -1.67
VAPB-205ENST00000476395 TNXBP22105 4242 aa4.56□□□□□ -1.68
VAPB-205ENST00000476395 EPPK1P58107 5090 aaKnown RBP4.56□□□□□ -1.68
VAPB-205ENST00000476395 A0A1B0GU33 70 aa4.53□□□□□ -1.68
VAPB-205ENST00000476395 HSPG2P98160 4391 aa4.53□□□□□ -1.68
VAPB-205ENST00000476395 FAT3Q8TDW7 4589 aa4.53□□□□□ -1.68
VAPB-205ENST00000476395 KRTAP15-1Q3LI76 137 aa4.52□□□□□ -1.69
VAPB-205ENST00000476395 KRTAP3-1Q9BYR8 98 aa4.52□□□□□ -1.69
VAPB-205ENST00000476395 KRTAP10-4P60372 401 aaPredicted RBP4.51□□□□□ -1.69
VAPB-205ENST00000476395 LORP23490 312 aaPredicted RBP4.5□□□□□ -1.69
VAPB-205ENST00000476395 C10orf95Q9H7T3 257 aa4.5□□□□□ -1.69
VAPB-205ENST00000476395 KIAA1109Q2LD37 5005 aa4.5□□□□□ -1.69
VAPB-205ENST00000476395 LRP1Q07954 4544 aaKnown RBP4.5□□□□□ -1.69
VAPB-205ENST00000476395 H1FX-AS1Q4G0G2 97 aa4.49□□□□□ -1.69
VAPB-205ENST00000476395 A0A1B0GVY2 172 aa4.49□□□□□ -1.69
VAPB-205ENST00000476395 SMR3BP02814 79 aaPredicted RBP4.49□□□□□ -1.69
VAPB-205ENST00000476395 TPRXLQ17RH7 258 aa4.48□□□□□ -1.69
VAPB-205ENST00000476395 COX6B2Q6YFQ2 88 aa4.45□□□□□ -1.7
VAPB-205ENST00000476395 A0A0D9SG42 100 aa4.44□□□□□ -1.7
VAPB-205ENST00000476395 RPS29P62273 56 aaKnown RBP4.43□□□□□ -1.7
VAPB-205ENST00000476395 C9orf92A6NGG3 77 aa4.43□□□□□ -1.7
VAPB-205ENST00000476395 LPAP08519 4548 aa4.42□□□□□ -1.7
VAPB-205ENST00000476395 MYCBP2O75592 4640 aa4.42□□□□□ -1.7
VAPB-205ENST00000476395 KRTAP13-4Q3LI77 160 aa4.42□□□□□ -1.7
VAPB-205ENST00000476395 RYR1P21817 5038 aa4.37□□□□□ -1.71
VAPB-205ENST00000476395 KRTAP17-1Q9BYP8 105 aa4.37□□□□□ -1.71
VAPB-205ENST00000476395 KRTAP10-6P60371 365 aaPredicted RBP4.32□□□□□ -1.72
VAPB-205ENST00000476395 RPL37P61927 97 aaKnown RBP4.32□□□□□ -1.72
VAPB-205ENST00000476395 KRTAP23-1A1A580 65 aa4.32□□□□□ -1.72
VAPB-205ENST00000476395 Q5VSD8 79 aa4.29□□□□□ -1.72
VAPB-205ENST00000476395 ABCA13Q86UQ4 5058 aa4.28□□□□□ -1.72
VAPB-205ENST00000476395 KRTAP10-8P60410 259 aa4.27□□□□□ -1.73
VAPB-205ENST00000476395 KRTAP12-2P59991 146 aa4.27□□□□□ -1.73
VAPB-205ENST00000476395 KRTAP4-5Q9BYR2 181 aa4.25□□□□□ -1.73
VAPB-205ENST00000476395 LRP2P98164 4655 aa4.24□□□□□ -1.73
VAPB-205ENST00000476395 HERC2O95714 4834 aa4.23□□□□□ -1.73
VAPB-205ENST00000476395 S4R3F8 94 aa4.22□□□□□ -1.73
VAPB-205ENST00000476395 R4GN34 69 aa4.2□□□□□ -1.74
VAPB-205ENST00000476395 BIRC6Q9NR09 4857 aa4.2□□□□□ -1.74
VAPB-205ENST00000476395 PCLOQ9Y6V0 5065 aa4.19□□□□□ -1.74
VAPB-205ENST00000476395 XP32Q5T750 250 aa4.17□□□□□ -1.74
VAPB-205ENST00000476395 PRO2289Q9P1D8 64 aa4.17□□□□□ -1.74
VAPB-205ENST00000476395 HERC1Q15751 4861 aa4.15□□□□□ -1.74
VAPB-205ENST00000476395 KRTAP12-1P59990 96 aa4.15□□□□□ -1.74
VAPB-205ENST00000476395 MUC17Q685J3 4493 aa4.14□□□□□ -1.75
VAPB-205ENST00000476395 MT1HL1P0DM35 61 aa4.13□□□□□ -1.75
VAPB-205ENST00000476395 PLAC4Q8WY50 150 aa4.12□□□□□ -1.75
VAPB-205ENST00000476395 MUC2Q02817 5179 aa4.06□□□□□ -1.76
VAPB-205ENST00000476395 RNF213Q63HN8 5207 aa3.95□□□□□ -1.78
VAPB-205ENST00000476395 UBR4Q5T4S7 5183 aa3.94□□□□□ -1.78
VAPB-205ENST00000476395 FLGP20930 4061 aaPredicted RBP3.94□□□□□ -1.78
VAPB-205ENST00000476395 KRTAP19-2Q3LHN2 52 aa3.94□□□□□ -1.78
VAPB-205ENST00000476395 KRTAP4-1Q9BYQ7 146 aa3.93□□□□□ -1.78
VAPB-205ENST00000476395 M0QZ58 72 aa3.92□□□□□ -1.78
VAPB-205ENST00000476395 HMCN2Q8NDA2 5059 aa3.92□□□□□ -1.78
VAPB-205ENST00000476395 INE1O15225 51 aa3.88□□□□□ -1.79
VAPB-205ENST00000476395 FAT4Q6V0I7 4981 aa3.87□□□□□ -1.79
VAPB-205ENST00000476395 PP632Q6XCG6 107 aa3.73□□□□□ -1.81
VAPB-205ENST00000476395 SPRR5A0A1B0GTR4 108 aa3.6□□□□□ -1.83
VAPB-205ENST00000476395 LCE4AQ5TA78 99 aa3.6□□□□□ -1.83
VAPB-205ENST00000476395 KRTAP19-1Q8IUB9 90 aa3.54□□□□□ -1.84
VAPB-205ENST00000476395 TNP1P09430 55 aa3.53□□□□□ -1.84
VAPB-205ENST00000476395 SPRR2GQ9BYE4 73 aa3.5□□□□□ -1.85
VAPB-205ENST00000476395 M0R2T5 61 aa3.48□□□□□ -1.85
VAPB-205ENST00000476395 MT1HP80294 61 aa3.45□□□□□ -1.86
VAPB-205ENST00000476395 FSIP2Q5CZC0 6907 aa3.45□□□□□ -1.86
VAPB-205ENST00000476395 LCE3AQ5TA76 89 aa3.44□□□□□ -1.86
VAPB-205ENST00000476395 USH2AO75445 5202 aa3.43□□□□□ -1.86
VAPB-205ENST00000476395 MT1FP04733 61 aa3.42□□□□□ -1.86
VAPB-205ENST00000476395 KRTAP9-8Q9BYQ0 159 aa3.42□□□□□ -1.86
VAPB-205ENST00000476395 MT2AP02795 61 aa3.4□□□□□ -1.87
VAPB-205ENST00000476395 KRTAP9-6A0A140TA67 174 aa3.39□□□□□ -1.87
VAPB-205ENST00000476395 KRTAP9-7A8MTY7 169 aa3.39□□□□□ -1.87
VAPB-205ENST00000476395 KRTAP10-5P60370 271 aa3.35□□□□□ -1.87
VAPB-205ENST00000476395 MT1BP07438 61 aa3.34□□□□□ -1.87
VAPB-205ENST00000476395 KRTAP10-10P60014 251 aa3.34□□□□□ -1.88
VAPB-205ENST00000476395 KRTAP19-8Q3LI54 63 aa3.34□□□□□ -1.88
VAPB-205ENST00000476395 KRTAP9-4Q9BYQ2 154 aa3.34□□□□□ -1.88
VAPB-205ENST00000476395 MT1XP80297 61 aa3.33□□□□□ -1.88
VAPB-205ENST00000476395 KRTAP8-1Q8IUC2 63 aa3.29□□□□□ -1.88
VAPB-205ENST00000476395 KRTAP9-9Q9BYP9 154 aa3.29□□□□□ -1.88
VAPB-205ENST00000476395 KMT2DO14686 5537 aa3.26□□□□□ -1.89
VAPB-205ENST00000476395 KRTAP9-3Q9BYQ3 159 aa3.25□□□□□ -1.89
VAPB-205ENST00000476395 KRTAP10-7P60409 375 aaPredicted RBP3.25□□□□□ -1.89
VAPB-205ENST00000476395 KRTAP10-12P60413 245 aa3.22□□□□□ -1.89
VAPB-205ENST00000476395 KRTAP12-3P60328 96 aa3.19□□□□□ -1.9
VAPB-205ENST00000476395 SSPOA2VEC9 5147 aa3.15□□□□□ -1.91
VAPB-205ENST00000476395 KRTAP19-4Q3LI73 84 aa3.14□□□□□ -1.91
VAPB-205ENST00000476395 LCE5AQ5TCM9 118 aa3.13□□□□□ -1.91
VAPB-205ENST00000476395 LOC100996750A0A140TA64 210 aa3.12□□□□□ -1.91
VAPB-205ENST00000476395 KRTAP4-6Q9BYQ5 205 aa3.12□□□□□ -1.91
VAPB-205ENST00000476395 KRTAP9-6A8MVA2 160 aa3.08□□□□□ -1.92
VAPB-205ENST00000476395 KRTAP19-5Q3LI72 72 aa3.07□□□□□ -1.92
VAPB-205ENST00000476395 KRTAP4-8A0A0G2JLE6 195 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms