RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 GPR98Q8WXG9 6306 aa1.5□□□□□ -2.17
UBR3-208ENST00000474426 HUWE1Q7Z6Z7 4374 aaKnown RBP1.49□□□□□ -2.17
UBR3-208ENST00000474426 SPG11Q96JI7 2443 aa1.49□□□□□ -2.17
UBR3-208ENST00000474426 LCE4AQ5TA78 99 aa1.49□□□□□ -2.17
UBR3-208ENST00000474426 NBEAL1Q6ZS30 2694 aa1.48□□□□□ -2.17
UBR3-208ENST00000474426 KRTAP5-9P26371 169 aa1.48□□□□□ -2.17
UBR3-208ENST00000474426 A0A096LNI7 61 aa1.48□□□□□ -2.17
UBR3-208ENST00000474426 Q5VSD8 79 aa1.48□□□□□ -2.17
UBR3-208ENST00000474426 TEP1Q99973 2627 aaKnown RBP1.48□□□□□ -2.17
UBR3-208ENST00000474426 KMT2CQ8NEZ4 4911 aaKnown RBP1.47□□□□□ -2.17
UBR3-208ENST00000474426 MYO9AB2RTY4 2548 aa1.47□□□□□ -2.17
UBR3-208ENST00000474426 DNAH10Q8IVF4 4471 aa1.46□□□□□ -2.17
UBR3-208ENST00000474426 LCE1AQ5T7P2 110 aa1.46□□□□□ -2.18
UBR3-208ENST00000474426 A0A096LPF7 62 aa1.46□□□□□ -2.18
UBR3-208ENST00000474426 KRTAP10-10P60014 251 aa1.46□□□□□ -2.18
UBR3-208ENST00000474426 U3KQA8 63 aa1.46□□□□□ -2.18
UBR3-208ENST00000474426 HYDINQ4G0P3 5121 aa1.46□□□□□ -2.18
UBR3-208ENST00000474426 PKHD1L1Q86WI1 4243 aa1.46□□□□□ -2.18
UBR3-208ENST00000474426 HERC2O95714 4834 aa1.46□□□□□ -2.18
UBR3-208ENST00000474426 PCLOQ9Y6V0 5065 aa1.46□□□□□ -2.18
UBR3-208ENST00000474426 H3BUX3 64 aa1.45□□□□□ -2.18
UBR3-208ENST00000474426 EPPK1P58107 5090 aaKnown RBP1.45□□□□□ -2.18
UBR3-208ENST00000474426 RP1L1Q8IWN7 2480 aaPredicted RBP1.45□□□□□ -2.18
UBR3-208ENST00000474426 SPTAN1Q13813 2472 aaKnown RBP1.45□□□□□ -2.18
UBR3-208ENST00000474426 LCE3CQ5T5A8 94 aa1.45□□□□□ -2.18
UBR3-208ENST00000474426 KMT2AQ03164 3969 aa1.45□□□□□ -2.18
UBR3-208ENST00000474426 KRTAP6-3Q3LI67 103 aa1.44□□□□□ -2.18
UBR3-208ENST00000474426 RYR2Q92736 4967 aa1.44□□□□□ -2.18
UBR3-208ENST00000474426 CEP295Q9C0D2 2601 aa1.44□□□□□ -2.18
UBR3-208ENST00000474426 PRKDCP78527 4128 aaKnown RBP1.44□□□□□ -2.18
UBR3-208ENST00000474426 HECTD4Q9Y4D8 3996 aa1.43□□□□□ -2.18
UBR3-208ENST00000474426 DNAH7Q8WXX0 4024 aa1.43□□□□□ -2.18
UBR3-208ENST00000474426 KRTAP1-5Q9BYS1 174 aa1.42□□□□□ -2.18
UBR3-208ENST00000474426 SPINK6Q6UWN8 80 aa1.42□□□□□ -2.18
UBR3-208ENST00000474426 NOTCH2Q04721 2471 aa1.42□□□□□ -2.18
UBR3-208ENST00000474426 KRTAP13-1Q8IUC0 172 aa1.41□□□□□ -2.18
UBR3-208ENST00000474426 SONP18583 2426 aaKnown RBP1.41□□□□□ -2.18
UBR3-208ENST00000474426 DNAH17Q9UFH2 4485 aa1.41□□□□□ -2.18
UBR3-208ENST00000474426 KRTAP9-7A8MTY7 169 aa1.41□□□□□ -2.18
UBR3-208ENST00000474426 KRTAP9-3Q9BYQ3 159 aa1.41□□□□□ -2.18
UBR3-208ENST00000474426 MTORP42345 2549 aa1.41□□□□□ -2.18
UBR3-208ENST00000474426 KRTAP5-2Q701N4 177 aa1.4□□□□□ -2.18
UBR3-208ENST00000474426 TGP01266 2768 aa1.4□□□□□ -2.18
UBR3-208ENST00000474426 SACSQ9NZJ4 4579 aa1.4□□□□□ -2.19
UBR3-208ENST00000474426 DEFB133Q30KQ1 61 aa1.4□□□□□ -2.19
UBR3-208ENST00000474426 VPS13BQ7Z7G8 4022 aa1.39□□□□□ -2.19
UBR3-208ENST00000474426 TENM3Q9P273 2699 aa1.39□□□□□ -2.19
UBR3-208ENST00000474426 NSD1Q96L73 2696 aaPredicted RBP1.39□□□□□ -2.19
UBR3-208ENST00000474426 FAT2Q9NYQ8 4349 aa1.39□□□□□ -2.19
UBR3-208ENST00000474426 LCE3EQ5T5B0 92 aa1.38□□□□□ -2.19
UBR3-208ENST00000474426 ANKHD1Q8IWZ3 2542 aaKnown RBP1.37□□□□□ -2.19
UBR3-208ENST00000474426 DNAH9Q9NYC9 4486 aa1.37□□□□□ -2.19
UBR3-208ENST00000474426 M0QZ58 72 aa1.36□□□□□ -2.19
UBR3-208ENST00000474426 DNAH2Q9P225 4427 aa1.36□□□□□ -2.19
UBR3-208ENST00000474426 MT3P25713 68 aa1.34□□□□□ -2.2
UBR3-208ENST00000474426 KRTAP12-4P60329 112 aa1.33□□□□□ -2.2
UBR3-208ENST00000474426 STAB1Q9NY15 2570 aa1.33□□□□□ -2.2
UBR3-208ENST00000474426 APOBP04114 4563 aaKnown RBP1.33□□□□□ -2.2
UBR3-208ENST00000474426 TLN1Q9Y490 2541 aaKnown RBP1.32□□□□□ -2.2
UBR3-208ENST00000474426 KRTAP5-4Q6L8H1 288 aa1.32□□□□□ -2.2
UBR3-208ENST00000474426 ABCA13Q86UQ4 5058 aa1.32□□□□□ -2.2
UBR3-208ENST00000474426 SMR3AQ99954 134 aa1.32□□□□□ -2.2
UBR3-208ENST00000474426 ACANP16112 2415 aa1.32□□□□□ -2.2
UBR3-208ENST00000474426 PKHD1P08F94 4074 aa1.31□□□□□ -2.2
UBR3-208ENST00000474426 DYNC1H1Q14204 4646 aaKnown RBP1.31□□□□□ -2.2
UBR3-208ENST00000474426 KIAA1109Q2LD37 5005 aa1.31□□□□□ -2.2
UBR3-208ENST00000474426 PKD1P98161 4303 aa1.3□□□□□ -2.2
UBR3-208ENST00000474426 TLN2Q9Y4G6 2542 aa1.3□□□□□ -2.2
UBR3-208ENST00000474426 LINC01556Q5JQF7 62 aa1.3□□□□□ -2.2
UBR3-208ENST00000474426 RYR1P21817 5038 aa1.29□□□□□ -2.2
UBR3-208ENST00000474426 HSPG2P98160 4391 aa1.29□□□□□ -2.2
UBR3-208ENST00000474426 MUC19Q7Z5P9 8384 aa1.28□□□□□ -2.2
UBR3-208ENST00000474426 FLNAP21333 2647 aaKnown RBP1.28□□□□□ -2.2
UBR3-208ENST00000474426 KRTAP10-7P60409 375 aaPredicted RBP1.28□□□□□ -2.2
UBR3-208ENST00000474426 LCE3DQ9BYE3 92 aa1.28□□□□□ -2.21
UBR3-208ENST00000474426 PLECQ15149 4684 aaKnown RBP1.27□□□□□ -2.21
UBR3-208ENST00000474426 FAT3Q8TDW7 4589 aa1.27□□□□□ -2.21
UBR3-208ENST00000474426 STARD9Q9P2P6 4700 aa1.27□□□□□ -2.21
UBR3-208ENST00000474426 NOTCH1P46531 2555 aa1.27□□□□□ -2.21
UBR3-208ENST00000474426 MGAM2Q2M2H8 2515 aa1.27□□□□□ -2.21
UBR3-208ENST00000474426 TENM1Q9UKZ4 2725 aa1.26□□□□□ -2.21
UBR3-208ENST00000474426 H3BNG1 76 aa1.25□□□□□ -2.21
UBR3-208ENST00000474426 FLGP20930 4061 aaPredicted RBP1.24□□□□□ -2.21
UBR3-208ENST00000474426 SYNE1Q8NF91 8797 aaKnown RBP1.24□□□□□ -2.21
UBR3-208ENST00000474426 DEFB4AO15263 64 aa1.24□□□□□ -2.21
UBR3-208ENST00000474426 SPART-AS1P0CW21 52 aa1.24□□□□□ -2.21
UBR3-208ENST00000474426 UBR4Q5T4S7 5183 aa1.23□□□□□ -2.21
UBR3-208ENST00000474426 KRTAP10-12P60413 245 aa1.23□□□□□ -2.21
UBR3-208ENST00000474426 KRTAP10-5P60370 271 aa1.23□□□□□ -2.21
UBR3-208ENST00000474426 CRCT1Q9UGL9 99 aa1.23□□□□□ -2.21
UBR3-208ENST00000474426 HTN3P15516 51 aa1.22□□□□□ -2.21
UBR3-208ENST00000474426 LRP1BQ9NZR2 4599 aa1.22□□□□□ -2.21
UBR3-208ENST00000474426 HMCN2Q8NDA2 5059 aa1.21□□□□□ -2.22
UBR3-208ENST00000474426 HERC1Q15751 4861 aa1.21□□□□□ -2.22
UBR3-208ENST00000474426 KRTAP2-3P0C7H8 128 aa1.21□□□□□ -2.22
UBR3-208ENST00000474426 KRTAP2-4Q9BYR9 128 aa1.21□□□□□ -2.22
UBR3-208ENST00000474426 KRTAP2-1Q9BYU5 128 aa1.21□□□□□ -2.22
UBR3-208ENST00000474426 TNP1P09430 55 aa1.2□□□□□ -2.22
UBR3-208ENST00000474426 KRTAP10-4P60372 401 aaPredicted RBP1.2□□□□□ -2.22
UBR3-208ENST00000474426 STAB2Q8WWQ8 2551 aa1.2□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 123.8 ms