RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 A0A087WVE0 104 aa0.67□□□□□ -2.3
VPS13A-210ENST00000471439 PFDN1O60925 122 aa0.67□□□□□ -2.3
VPS13A-210ENST00000471439 TEN1Q86WV5 123 aa0.67□□□□□ -2.3
VPS13A-210ENST00000471439 ADCYAP1P18509 176 aa0.66□□□□□ -2.3
VPS13A-210ENST00000471439 BIN3Q9NQY0 253 aa0.66□□□□□ -2.3
VPS13A-210ENST00000471439 HIGD1CA8MV81 97 aa0.65□□□□□ -2.31
VPS13A-210ENST00000471439 NEDD8Q15843 81 aa0.65□□□□□ -2.31
VPS13A-210ENST00000471439 OR13C6PQ8NH95 151 aa0.65□□□□□ -2.31
VPS13A-210ENST00000471439 RAB37Q96AX2 223 aa0.65□□□□□ -2.31
VPS13A-210ENST00000471439 NAP1L6A6NFF2 107 aa0.64□□□□□ -2.31
VPS13A-210ENST00000471439 IGLC3P0DOY3 106 aa0.64□□□□□ -2.31
VPS13A-210ENST00000471439 ORMDL1Q9P0S3 153 aa0.64□□□□□ -2.31
VPS13A-210ENST00000471439 TRBV7-6A0A0J9YX20 115 aa0.63□□□□□ -2.31
VPS13A-210ENST00000471439 GNGT1P63211 74 aa0.63□□□□□ -2.31
VPS13A-210ENST00000471439 LINC00587B1AMM8 73 aa0.62□□□□□ -2.31
VPS13A-210ENST00000471439 K7ERJ3 54 aa0.62□□□□□ -2.31
VPS13A-210ENST00000471439 LYRM1O43325 122 aa0.62□□□□□ -2.31
VPS13A-210ENST00000471439 NPC2P61916 151 aa0.62□□□□□ -2.31
VPS13A-210ENST00000471439 KCNRGQ8N5I3 272 aa0.62□□□□□ -2.31
VPS13A-210ENST00000471439 F8W1H4 67 aa0.61□□□□□ -2.31
VPS13A-210ENST00000471439 Q8N8P6 123 aa0.61□□□□□ -2.31
VPS13A-210ENST00000471439 PPP1R1CQ8WVI7 109 aa0.61□□□□□ -2.31
VPS13A-210ENST00000471439 CHCHD1Q96BP2 118 aaKnown RBP0.61□□□□□ -2.31
VPS13A-210ENST00000471439 PRELID3AQ96N28 172 aa0.61□□□□□ -2.31
VPS13A-210ENST00000471439 hDV103S1A0JD37 113 aa0.6□□□□□ -2.31
VPS13A-210ENST00000471439 MPC2O95563 127 aa0.6□□□□□ -2.31
VPS13A-210ENST00000471439 AKR1C8PQ5T2L2 129 aa0.6□□□□□ -2.31
VPS13A-210ENST00000471439 TMEM170BQ5T4T1 132 aa0.6□□□□□ -2.31
VPS13A-210ENST00000471439 TRGC2P03986 189 aa0.59□□□□□ -2.31
VPS13A-210ENST00000471439 Q6ZQY7 126 aa0.59□□□□□ -2.31
VPS13A-210ENST00000471439 SMIM20Q8N5G0 67 aa0.59□□□□□ -2.31
VPS13A-210ENST00000471439 LINC01546A6NGU7 62 aa0.58□□□□□ -2.32
VPS13A-210ENST00000471439 MT-ATP8P03928 68 aa0.58□□□□□ -2.32
VPS13A-210ENST00000471439 SPANXDQ9BXN6 97 aa0.58□□□□□ -2.32
VPS13A-210ENST00000471439 HCG22E2RYF7 251 aa0.57□□□□□ -2.32
VPS13A-210ENST00000471439 K7EMI3 77 aa0.57□□□□□ -2.32
VPS13A-210ENST00000471439 IL7P13232 177 aa0.57□□□□□ -2.32
VPS13A-210ENST00000471439 COX7CP15954 63 aa0.57□□□□□ -2.32
VPS13A-210ENST00000471439 LINC00575Q6W349 94 aa0.57□□□□□ -2.32
VPS13A-210ENST00000471439 SNHG12Q9BXW3 62 aa0.57□□□□□ -2.32
VPS13A-210ENST00000471439 MYMXA0A1B0GTQ4 84 aa0.56□□□□□ -2.32
VPS13A-210ENST00000471439 HBDP02042 147 aa0.56□□□□□ -2.32
VPS13A-210ENST00000471439 G0S2P27469 103 aa0.56□□□□□ -2.32
VPS13A-210ENST00000471439 NDUFC1O43677 76 aa0.55□□□□□ -2.32
VPS13A-210ENST00000471439 MRPL54Q6P161 138 aaKnown RBP0.55□□□□□ -2.32
VPS13A-210ENST00000471439 C20orf197Q8N268 126 aa0.55□□□□□ -2.32
VPS13A-210ENST00000471439 GNG13Q9P2W3 67 aa0.55□□□□□ -2.32
VPS13A-210ENST00000471439 MUSTN1Q8IVN3 82 aa0.54□□□□□ -2.32
VPS13A-210ENST00000471439 SPANXCQ9NY87 97 aa0.54□□□□□ -2.32
VPS13A-210ENST00000471439 V9GYH0 126 aa0.54□□□□□ -2.32
VPS13A-210ENST00000471439 JMJD7-PLA2G4BH0Y9G9 81 aa0.53□□□□□ -2.32
VPS13A-210ENST00000471439 FAM213BQ8TBF2 198 aa0.53□□□□□ -2.32
VPS13A-210ENST00000471439 MANBALQ9NQG1 85 aa0.53□□□□□ -2.32
VPS13A-210ENST00000471439 NAT8BQ9UHF3 227 aa0.53□□□□□ -2.32
VPS13A-210ENST00000471439 LAMTOR2Q9Y2Q5 125 aa0.53□□□□□ -2.32
VPS13A-210ENST00000471439 HIST1H2BKO60814 126 aa0.52□□□□□ -2.33
VPS13A-210ENST00000471439 HIST1H2BJP06899 126 aa0.52□□□□□ -2.33
VPS13A-210ENST00000471439 V9GYV3 84 aa0.52□□□□□ -2.33
VPS13A-210ENST00000471439 hADV29S1A0JD25 119 aa0.51□□□□□ -2.33
VPS13A-210ENST00000471439 MIR22HGQ0VDD5 57 aa0.51□□□□□ -2.33
VPS13A-210ENST00000471439 PPDPFLQ8WWR9 84 aa0.51□□□□□ -2.33
VPS13A-210ENST00000471439 MRPL34Q9BQ48 92 aaKnown RBP0.51□□□□□ -2.33
VPS13A-210ENST00000471439 BATF3Q9NR55 127 aa0.51□□□□□ -2.33
VPS13A-210ENST00000471439 SPATA45Q537H7 98 aa0.5□□□□□ -2.33
VPS13A-210ENST00000471439 LINC00308Q8TCZ7 52 aa0.5□□□□□ -2.33
VPS13A-210ENST00000471439 TRBV7-4A0A0J9YYF1 115 aa0.49□□□□□ -2.33
VPS13A-210ENST00000471439 LINC01549A6NIU2 74 aa0.49□□□□□ -2.33
VPS13A-210ENST00000471439 NDUFB1O75438 58 aa0.49□□□□□ -2.33
VPS13A-210ENST00000471439 S100A8P05109 93 aa0.49□□□□□ -2.33
VPS13A-210ENST00000471439 TRIQKQ629K1 86 aa0.49□□□□□ -2.33
VPS13A-210ENST00000471439 BAGE3Q86Y29 109 aa0.49□□□□□ -2.33
VPS13A-210ENST00000471439 SMIM27A0A1W2PRY6 76 aa0.48□□□□□ -2.33
VPS13A-210ENST00000471439 H3BMG7 143 aa0.48□□□□□ -2.33
VPS13A-210ENST00000471439 J3KT08 172 aa0.47□□□□□ -2.33
VPS13A-210ENST00000471439 SPATA8Q6RVD6 105 aa0.47□□□□□ -2.33
VPS13A-210ENST00000471439 SMIM11BQ8TCY0 68 aa0.47□□□□□ -2.33
VPS13A-210ENST00000471439 MMP24-AS1A0A0U1RRL7 71 aa0.46□□□□□ -2.34
VPS13A-210ENST00000471439 UMAD1C9J7I0 102 aa0.44□□□□□ -2.34
VPS13A-210ENST00000471439 TRACP01848 142 aa0.43□□□□□ -2.34
VPS13A-210ENST00000471439 FABP2P12104 132 aa0.43□□□□□ -2.34
VPS13A-210ENST00000471439 FABP4P15090 132 aa0.42□□□□□ -2.34
VPS13A-210ENST00000471439 HSPB8Q9UJY1 196 aa0.42□□□□□ -2.34
VPS13A-210ENST00000471439 K7EP34 96 aa0.41□□□□□ -2.34
VPS13A-210ENST00000471439 CCKP06307 115 aa0.41□□□□□ -2.34
VPS13A-210ENST00000471439 C12orf57Q99622 126 aa0.41□□□□□ -2.34
VPS13A-210ENST00000471439 A0A1B0GV72 72 aa0.4□□□□□ -2.35
VPS13A-210ENST00000471439 SMIM7Q9BQ49 75 aa0.4□□□□□ -2.35
VPS13A-210ENST00000471439 S100A5P33763 92 aa0.39□□□□□ -2.35
VPS13A-210ENST00000471439 ATOH7Q8N100 152 aa0.39□□□□□ -2.35
VPS13A-210ENST00000471439 IFITM1P13164 125 aa0.38□□□□□ -2.35
VPS13A-210ENST00000471439 PMCHL1Q16048 86 aa0.38□□□□□ -2.35
VPS13A-210ENST00000471439 CASC2Q6XLA1 102 aa0.37□□□□□ -2.35
VPS13A-210ENST00000471439 Q9H521 79 aa0.37□□□□□ -2.35
VPS13A-210ENST00000471439 SMCO4Q9NRQ5 59 aa0.37□□□□□ -2.35
VPS13A-210ENST00000471439 VPS25Q9BRG1 176 aa0.36□□□□□ -2.35
VPS13A-210ENST00000471439 TNP1P09430 55 aa0.35□□□□□ -2.35
VPS13A-210ENST00000471439 ADIRFQ15847 76 aa0.35□□□□□ -2.35
VPS13A-210ENST00000471439 TCTE3Q8IZS6 198 aa0.35□□□□□ -2.35
VPS13A-210ENST00000471439 LINC00208Q96KT6 92 aa0.33□□□□□ -2.36
VPS13A-210ENST00000471439 ARPC5O15511 151 aa0.32□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 153.2 ms