RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 UBE2DNLQ8IWF7 75 aa2.58□□□□□ -2
COL3A1-205ENST00000470167 TRRAPQ9Y4A5 3859 aa2.57□□□□□ -2
COL3A1-205ENST00000470167 FLG2Q5D862 2391 aaPredicted RBP2.56□□□□□ -2
COL3A1-205ENST00000470167 STAB2Q8WWQ8 2551 aa2.56□□□□□ -2
COL3A1-205ENST00000470167 SPRR5A0A1B0GTR4 108 aa2.54□□□□□ -2
COL3A1-205ENST00000470167 NOP10Q9NPE3 64 aaKnown RBP2.54□□□□□ -2
COL3A1-205ENST00000470167 KRTAP10-7P60409 375 aaPredicted RBP2.53□□□□□ -2
COL3A1-205ENST00000470167 PRLHP81277 87 aa2.53□□□□□ -2
COL3A1-205ENST00000470167 DEFB133Q30KQ1 61 aa2.52□□□□□ -2.01
COL3A1-205ENST00000470167 PP632Q6XCG6 107 aa2.52□□□□□ -2.01
COL3A1-205ENST00000470167 SMR3AQ99954 134 aa2.52□□□□□ -2.01
COL3A1-205ENST00000470167 BRD3OSQ6XYD6 125 aa2.51□□□□□ -2.01
COL3A1-205ENST00000470167 PRO0255Q9UI72 69 aa2.51□□□□□ -2.01
COL3A1-205ENST00000470167 DYNC2H1Q8NCM8 4307 aaKnown RBP2.5□□□□□ -2.01
COL3A1-205ENST00000470167 KRTAP5-11Q6L8G4 156 aa2.5□□□□□ -2.01
COL3A1-205ENST00000470167 S4R3F8 94 aa2.5□□□□□ -2.01
COL3A1-205ENST00000470167 KRTAP5-9P26371 169 aa2.49□□□□□ -2.01
COL3A1-205ENST00000470167 DEFB136Q30KP8 78 aa2.48□□□□□ -2.01
COL3A1-205ENST00000470167 SPINK1P00995 79 aa2.47□□□□□ -2.01
COL3A1-205ENST00000470167 KRTAP10-6P60371 365 aaPredicted RBP2.46□□□□□ -2.02
COL3A1-205ENST00000470167 DMBT1Q9UGM3 2413 aaPredicted RBP2.46□□□□□ -2.02
COL3A1-205ENST00000470167 HECTD4Q9Y4D8 3996 aa2.45□□□□□ -2.02
COL3A1-205ENST00000470167 KRTAP10-12P60413 245 aa2.45□□□□□ -2.02
COL3A1-205ENST00000470167 DNAH1Q9P2D7 4330 aa2.45□□□□□ -2.02
COL3A1-205ENST00000470167 FAT4Q6V0I7 4981 aa2.44□□□□□ -2.02
COL3A1-205ENST00000470167 SACSQ9NZJ4 4579 aa2.44□□□□□ -2.02
COL3A1-205ENST00000470167 SRRM2Q9UQ35 2752 aaKnown RBP2.42□□□□□ -2.02
COL3A1-205ENST00000470167 CMYA5Q8N3K9 4069 aa2.42□□□□□ -2.02
COL3A1-205ENST00000470167 FSIP2Q5CZC0 6907 aa2.41□□□□□ -2.02
COL3A1-205ENST00000470167 A0A1B0GVY2 172 aa2.41□□□□□ -2.02
COL3A1-205ENST00000470167 KRTAP13-4Q3LI77 160 aa2.41□□□□□ -2.02
COL3A1-205ENST00000470167 LCE3CQ5T5A8 94 aa2.41□□□□□ -2.02
COL3A1-205ENST00000470167 APLNQ9ULZ1 77 aa2.41□□□□□ -2.02
COL3A1-205ENST00000470167 U3KQA8 63 aa2.41□□□□□ -2.02
COL3A1-205ENST00000470167 RNF213Q63HN8 5207 aa2.41□□□□□ -2.02
COL3A1-205ENST00000470167 CRCT1Q9UGL9 99 aa2.4□□□□□ -2.03
COL3A1-205ENST00000470167 KRTAP12-1P59990 96 aa2.39□□□□□ -2.03
COL3A1-205ENST00000470167 KRTAP13-2Q52LG2 175 aa2.39□□□□□ -2.03
COL3A1-205ENST00000470167 KRTAP5-1Q6L8H4 278 aa2.38□□□□□ -2.03
COL3A1-205ENST00000470167 KRTAP13-1Q8IUC0 172 aa2.38□□□□□ -2.03
COL3A1-205ENST00000470167 FRAS1Q86XX4 4008 aa2.38□□□□□ -2.03
COL3A1-205ENST00000470167 KRTAP4-4Q9BYR3 166 aa2.37□□□□□ -2.03
COL3A1-205ENST00000470167 LYSTQ99698 3801 aa2.37□□□□□ -2.03
COL3A1-205ENST00000470167 ANK3Q12955 4377 aaKnown RBP2.36□□□□□ -2.03
COL3A1-205ENST00000470167 A0A096LPF7 62 aa2.36□□□□□ -2.03
COL3A1-205ENST00000470167 KRTAP1-4P0C5Y4 121 aa2.36□□□□□ -2.03
COL3A1-205ENST00000470167 Q5VSD8 79 aa2.36□□□□□ -2.03
COL3A1-205ENST00000470167 KRTAP5-4Q6L8H1 288 aa2.36□□□□□ -2.03
COL3A1-205ENST00000470167 A0A0D9SG42 100 aa2.35□□□□□ -2.03
COL3A1-205ENST00000470167 CSMD3Q7Z407 3707 aa2.34□□□□□ -2.03
COL3A1-205ENST00000470167 LCE1EQ5T753 118 aa2.34□□□□□ -2.03
COL3A1-205ENST00000470167 KMT2AQ03164 3969 aa2.33□□□□□ -2.04
COL3A1-205ENST00000470167 H3BNG1 76 aa2.32□□□□□ -2.04
COL3A1-205ENST00000470167 KRTAP10-5P60370 271 aa2.32□□□□□ -2.04
COL3A1-205ENST00000470167 ROS1P08922 2347 aa2.32□□□□□ -2.04
COL3A1-205ENST00000470167 A0A096LNI7 61 aa2.31□□□□□ -2.04
COL3A1-205ENST00000470167 LINC01556Q5JQF7 62 aa2.31□□□□□ -2.04
COL3A1-205ENST00000470167 KRTAP10-3P60369 221 aa2.28□□□□□ -2.04
COL3A1-205ENST00000470167 SPINK6Q6UWN8 80 aa2.28□□□□□ -2.04
COL3A1-205ENST00000470167 M0QZ58 72 aa2.27□□□□□ -2.05
COL3A1-205ENST00000470167 PKHD1P08F94 4074 aa2.26□□□□□ -2.05
COL3A1-205ENST00000470167 VPS13DQ5THJ4 4388 aa2.26□□□□□ -2.05
COL3A1-205ENST00000470167 HMCN2Q8NDA2 5059 aa2.24□□□□□ -2.05
COL3A1-205ENST00000470167 GPR98Q8WXG9 6306 aa2.23□□□□□ -2.05
COL3A1-205ENST00000470167 HRNRQ86YZ3 2850 aaPredicted RBP2.22□□□□□ -2.05
COL3A1-205ENST00000470167 SPART-AS1P0CW21 52 aa2.21□□□□□ -2.06
COL3A1-205ENST00000470167 LCE3EQ5T5B0 92 aa2.21□□□□□ -2.06
COL3A1-205ENST00000470167 SSPOA2VEC9 5147 aa2.18□□□□□ -2.06
COL3A1-205ENST00000470167 NEBP20929 6669 aa2.18□□□□□ -2.06
COL3A1-205ENST00000470167 DNAH11Q96DT5 4516 aa2.18□□□□□ -2.06
COL3A1-205ENST00000470167 DNAH7Q8WXX0 4024 aa2.18□□□□□ -2.06
COL3A1-205ENST00000470167 MYCBP2O75592 4640 aa2.18□□□□□ -2.06
COL3A1-205ENST00000470167 HSPG2P98160 4391 aa2.18□□□□□ -2.06
COL3A1-205ENST00000470167 KRTAP10-10P60014 251 aa2.16□□□□□ -2.06
COL3A1-205ENST00000470167 DNAH9Q9NYC9 4486 aa2.15□□□□□ -2.07
COL3A1-205ENST00000470167 KRTAP10-1P60331 282 aa2.14□□□□□ -2.07
COL3A1-205ENST00000470167 DNAH10Q8IVF4 4471 aa2.13□□□□□ -2.07
COL3A1-205ENST00000470167 DYNC1H1Q14204 4646 aaKnown RBP2.13□□□□□ -2.07
COL3A1-205ENST00000470167 SYNE2Q8WXH0 6885 aaKnown RBP2.13□□□□□ -2.07
COL3A1-205ENST00000470167 HUWE1Q7Z6Z7 4374 aaKnown RBP2.13□□□□□ -2.07
COL3A1-205ENST00000470167 HTN3P15516 51 aa2.12□□□□□ -2.07
COL3A1-205ENST00000470167 KRTAP5-2Q701N4 177 aa2.12□□□□□ -2.07
COL3A1-205ENST00000470167 FAT2Q9NYQ8 4349 aa2.12□□□□□ -2.07
COL3A1-205ENST00000470167 KRTAP9-6A8MVA2 160 aa2.1□□□□□ -2.07
COL3A1-205ENST00000470167 KRTAP20-1Q3LI63 56 aa2.1□□□□□ -2.07
COL3A1-205ENST00000470167 DEFB4AO15263 64 aa2.08□□□□□ -2.08
COL3A1-205ENST00000470167 STARD9Q9P2P6 4700 aa2.08□□□□□ -2.08
COL3A1-205ENST00000470167 DEFB135Q30KP9 77 aa2.07□□□□□ -2.08
COL3A1-205ENST00000470167 PLECQ15149 4684 aaKnown RBP2.07□□□□□ -2.08
COL3A1-205ENST00000470167 DNAH3Q8TD57 4116 aa2.06□□□□□ -2.08
COL3A1-205ENST00000470167 RPS29P62273 56 aaKnown RBP2.06□□□□□ -2.08
COL3A1-205ENST00000470167 DNAH8Q96JB1 4490 aa2.05□□□□□ -2.08
COL3A1-205ENST00000470167 LRP2P98164 4655 aa2.05□□□□□ -2.08
COL3A1-205ENST00000470167 MACF1Q9UPN3 7388 aaKnown RBP2.02□□□□□ -2.09
COL3A1-205ENST00000470167 PKHD1L1Q86WI1 4243 aa2.02□□□□□ -2.09
COL3A1-205ENST00000470167 TNP1P09430 55 aa2□□□□□ -2.09
COL3A1-205ENST00000470167 FAT1Q14517 4588 aa2□□□□□ -2.09
COL3A1-205ENST00000470167 DNAH6Q9C0G6 4158 aa1.99□□□□□ -2.09
COL3A1-205ENST00000470167 APOBP04114 4563 aaKnown RBP1.98□□□□□ -2.09
COL3A1-205ENST00000470167 OBSCNQ5VST9 7968 aa1.97□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms