RNA–Protein interactions for RNA: ENST00000467558.5

BRAT1-203, Transcript of BRCA1 associated ATM activator 1, humanhuman

TSL 5

Gene BRAT1, Length 4,440 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRAT1-203ENST00000467558 CMYA5Q8N3K9 4069 aa6.74□□□□□ -1.33
BRAT1-203ENST00000467558 DNAH3Q8TD57 4116 aa6.73□□□□□ -1.33
BRAT1-203ENST00000467558 DNAH17Q9UFH2 4485 aa6.68□□□□□ -1.34
BRAT1-203ENST00000467558 FAT1Q14517 4588 aa6.65□□□□□ -1.34
BRAT1-203ENST00000467558 LRP1BQ9NZR2 4599 aa6.63□□□□□ -1.35
BRAT1-203ENST00000467558 DNAH2Q9P225 4427 aa6.62□□□□□ -1.35
BRAT1-203ENST00000467558 ALMS1Q8TCU4 4167 aa6.61□□□□□ -1.35
BRAT1-203ENST00000467558 KRTAP12-2P59991 146 aa6.61□□□□□ -1.35
BRAT1-203ENST00000467558 NDUFAF8A1L188 74 aa6.6□□□□□ -1.35
BRAT1-203ENST00000467558 PRO2289Q9P1D8 64 aa6.6□□□□□ -1.35
BRAT1-203ENST00000467558 DNAH7Q8WXX0 4024 aa6.6□□□□□ -1.35
BRAT1-203ENST00000467558 KRTAP10-6P60371 365 aaPredicted RBP6.58□□□□□ -1.36
BRAT1-203ENST00000467558 KRTAP4-5Q9BYR2 181 aa6.57□□□□□ -1.36
BRAT1-203ENST00000467558 DYNC1H1Q14204 4646 aaKnown RBP6.57□□□□□ -1.36
BRAT1-203ENST00000467558 KRTAP12-1P59990 96 aa6.57□□□□□ -1.36
BRAT1-203ENST00000467558 DNAH8Q96JB1 4490 aa6.57□□□□□ -1.36
BRAT1-203ENST00000467558 DYNC2H1Q8NCM8 4307 aaKnown RBP6.51□□□□□ -1.37
BRAT1-203ENST00000467558 KRTAP13-4Q3LI77 160 aa6.49□□□□□ -1.37
BRAT1-203ENST00000467558 DNAH6Q9C0G6 4158 aa6.46□□□□□ -1.37
BRAT1-203ENST00000467558 KRTAP3-3Q9BYR6 98 aa6.46□□□□□ -1.38
BRAT1-203ENST00000467558 FRAS1Q86XX4 4008 aa6.45□□□□□ -1.38
BRAT1-203ENST00000467558 VPS13BQ7Z7G8 4022 aa6.43□□□□□ -1.38
BRAT1-203ENST00000467558 HECTD4Q9Y4D8 3996 aa6.41□□□□□ -1.38
BRAT1-203ENST00000467558 KRTAP3-2Q9BYR7 98 aa6.4□□□□□ -1.38
BRAT1-203ENST00000467558 KIAA1109Q2LD37 5005 aa6.37□□□□□ -1.39
BRAT1-203ENST00000467558 HYDINQ4G0P3 5121 aa6.37□□□□□ -1.39
BRAT1-203ENST00000467558 RYR1P21817 5038 aa6.34□□□□□ -1.39
BRAT1-203ENST00000467558 FAT2Q9NYQ8 4349 aa6.34□□□□□ -1.4
BRAT1-203ENST00000467558 SACSQ9NZJ4 4579 aa6.33□□□□□ -1.4
BRAT1-203ENST00000467558 MYCBP2O75592 4640 aa6.32□□□□□ -1.4
BRAT1-203ENST00000467558 PKHD1P08F94 4074 aa6.28□□□□□ -1.4
BRAT1-203ENST00000467558 APOBP04114 4563 aaKnown RBP6.28□□□□□ -1.4
BRAT1-203ENST00000467558 RYR3Q15413 4870 aa6.27□□□□□ -1.41
BRAT1-203ENST00000467558 LRP1Q07954 4544 aaKnown RBP6.26□□□□□ -1.41
BRAT1-203ENST00000467558 FAT3Q8TDW7 4589 aa6.18□□□□□ -1.42
BRAT1-203ENST00000467558 RYR2Q92736 4967 aa6.16□□□□□ -1.42
BRAT1-203ENST00000467558 KMT2CQ8NEZ4 4911 aaKnown RBP6.15□□□□□ -1.42
BRAT1-203ENST00000467558 KRTAP17-1Q9BYP8 105 aa6.15□□□□□ -1.43
BRAT1-203ENST00000467558 PKD1P98161 4303 aa6.07□□□□□ -1.44
BRAT1-203ENST00000467558 LORP23490 312 aaPredicted RBP6.02□□□□□ -1.44
BRAT1-203ENST00000467558 KRTAP4-1Q9BYQ7 146 aa6.02□□□□□ -1.45
BRAT1-203ENST00000467558 KRTAP15-1Q3LI76 137 aa5.97□□□□□ -1.45
BRAT1-203ENST00000467558 HSPG2P98160 4391 aa5.95□□□□□ -1.46
BRAT1-203ENST00000467558 KRTAP10-12P60413 245 aa5.93□□□□□ -1.46
BRAT1-203ENST00000467558 LRP2P98164 4655 aa5.93□□□□□ -1.46
BRAT1-203ENST00000467558 HERC2O95714 4834 aa5.91□□□□□ -1.46
BRAT1-203ENST00000467558 KRTAP23-1A1A580 65 aa5.87□□□□□ -1.47
BRAT1-203ENST00000467558 MT1HP80294 61 aa5.82□□□□□ -1.48
BRAT1-203ENST00000467558 EPPK1P58107 5090 aaKnown RBP5.78□□□□□ -1.48
BRAT1-203ENST00000467558 KRTAP12-3P60328 96 aa5.77□□□□□ -1.49
BRAT1-203ENST00000467558 LCE3AQ5TA76 89 aa5.74□□□□□ -1.49
BRAT1-203ENST00000467558 MT2AP02795 61 aa5.73□□□□□ -1.49
BRAT1-203ENST00000467558 LPAP08519 4548 aa5.73□□□□□ -1.49
BRAT1-203ENST00000467558 SPRR2GQ9BYE4 73 aa5.72□□□□□ -1.49
BRAT1-203ENST00000467558 PKHD1L1Q86WI1 4243 aa5.68□□□□□ -1.5
BRAT1-203ENST00000467558 BIRC6Q9NR09 4857 aa5.68□□□□□ -1.5
BRAT1-203ENST00000467558 TNXBP22105 4242 aa5.66□□□□□ -1.5
BRAT1-203ENST00000467558 MT1FP04733 61 aa5.62□□□□□ -1.51
BRAT1-203ENST00000467558 ABCA13Q86UQ4 5058 aa5.62□□□□□ -1.51
BRAT1-203ENST00000467558 KRTAP8-1Q8IUC2 63 aa5.48□□□□□ -1.53
BRAT1-203ENST00000467558 HERC1Q15751 4861 aa5.45□□□□□ -1.54
BRAT1-203ENST00000467558 CRCT1Q9UGL9 99 aa5.45□□□□□ -1.54
BRAT1-203ENST00000467558 PCLOQ9Y6V0 5065 aa5.44□□□□□ -1.54
BRAT1-203ENST00000467558 KRTAP19-1Q8IUB9 90 aa5.43□□□□□ -1.54
BRAT1-203ENST00000467558 INE1O15225 51 aa5.41□□□□□ -1.54
BRAT1-203ENST00000467558 KRTAP19-8Q3LI54 63 aa5.39□□□□□ -1.55
BRAT1-203ENST00000467558 MUC2Q02817 5179 aa5.36□□□□□ -1.55
BRAT1-203ENST00000467558 LCE2CQ5TA81 110 aa5.35□□□□□ -1.55
BRAT1-203ENST00000467558 KRTAP19-2Q3LHN2 52 aa5.32□□□□□ -1.56
BRAT1-203ENST00000467558 KRTAP9-8Q9BYQ0 159 aa5.3□□□□□ -1.56
BRAT1-203ENST00000467558 MUC17Q685J3 4493 aa5.27□□□□□ -1.57
BRAT1-203ENST00000467558 RNF213Q63HN8 5207 aa5.27□□□□□ -1.57
BRAT1-203ENST00000467558 KRTAP19-5Q3LI72 72 aa5.24□□□□□ -1.57
BRAT1-203ENST00000467558 FLGP20930 4061 aaPredicted RBP5.22□□□□□ -1.57
BRAT1-203ENST00000467558 MT1BP07438 61 aa5.21□□□□□ -1.58
BRAT1-203ENST00000467558 FAT4Q6V0I7 4981 aa5.2□□□□□ -1.58
BRAT1-203ENST00000467558 MT1XP80297 61 aa5.19□□□□□ -1.58
BRAT1-203ENST00000467558 UBR4Q5T4S7 5183 aa5.18□□□□□ -1.58
BRAT1-203ENST00000467558 KRTAP10-7P60409 375 aaPredicted RBP5.17□□□□□ -1.58
BRAT1-203ENST00000467558 KRTAP19-4Q3LI73 84 aa5.15□□□□□ -1.58
BRAT1-203ENST00000467558 KRTAP10-5P60370 271 aa5.15□□□□□ -1.58
BRAT1-203ENST00000467558 KRTAP9-3Q9BYQ3 159 aa5.15□□□□□ -1.59
BRAT1-203ENST00000467558 HMCN2Q8NDA2 5059 aa5.14□□□□□ -1.59
BRAT1-203ENST00000467558 SPRR2FQ96RM1 72 aa5.12□□□□□ -1.59
BRAT1-203ENST00000467558 LCE3CQ5T5A8 94 aa5.12□□□□□ -1.59
BRAT1-203ENST00000467558 FSIP2Q5CZC0 6907 aa4.96□□□□□ -1.62
BRAT1-203ENST00000467558 LCE2BO14633 110 aa4.92□□□□□ -1.62
BRAT1-203ENST00000467558 KRTAP4-8A0A0G2JLE6 195 aa4.91□□□□□ -1.62
BRAT1-203ENST00000467558 KRTAP4-8Q9BYQ9 185 aa4.91□□□□□ -1.62
BRAT1-203ENST00000467558 SPRR5A0A1B0GTR4 108 aa4.83□□□□□ -1.64
BRAT1-203ENST00000467558 MT1GP13640 62 aa4.79□□□□□ -1.64
BRAT1-203ENST00000467558 SPRR2EP22531 72 aa4.77□□□□□ -1.65
BRAT1-203ENST00000467558 SPRR2BP35325 72 aa4.77□□□□□ -1.65
BRAT1-203ENST00000467558 SPRR2AP35326 72 aa4.77□□□□□ -1.65
BRAT1-203ENST00000467558 LCE2AQ5TA79 106 aaPredicted RBP4.76□□□□□ -1.65
BRAT1-203ENST00000467558 KRTAP19-6Q3LI70 58 aa4.67□□□□□ -1.66
BRAT1-203ENST00000467558 MT1LQ93083 61 aa4.64□□□□□ -1.67
BRAT1-203ENST00000467558 MT1EP04732 61 aa4.64□□□□□ -1.67
BRAT1-203ENST00000467558 KRTAP19-3Q7Z4W3 81 aa4.64□□□□□ -1.67
BRAT1-203ENST00000467558 USH2AO75445 5202 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms