RNA–Protein interactions for RNA: ENST00000464541.5

PTCD3-205, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 890 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-205ENST00000464541 TEP1Q99973 2627 aaKnown RBP0.27□□□□□ -2.37
PTCD3-205ENST00000464541 PKHD1P08F94 4074 aa0.27□□□□□ -2.37
PTCD3-205ENST00000464541 CCDC168Q8NDH2 2452 aa0.27□□□□□ -2.37
PTCD3-205ENST00000464541 LRP2P98164 4655 aa0.25□□□□□ -2.37
PTCD3-205ENST00000464541 MYO18BQ8IUG5 2567 aa0.25□□□□□ -2.37
PTCD3-205ENST00000464541 STAB2Q8WWQ8 2551 aa0.25□□□□□ -2.37
PTCD3-205ENST00000464541 MGAM2Q2M2H8 2515 aa0.25□□□□□ -2.37
PTCD3-205ENST00000464541 PKHD1L1Q86WI1 4243 aa0.25□□□□□ -2.37
PTCD3-205ENST00000464541 SPRR2GQ9BYE4 73 aa0.25□□□□□ -2.37
PTCD3-205ENST00000464541 FSIP2Q5CZC0 6907 aa0.25□□□□□ -2.37
PTCD3-205ENST00000464541 HTTP42858 3142 aa0.24□□□□□ -2.37
PTCD3-205ENST00000464541 DEFB1P60022 68 aa0.24□□□□□ -2.37
PTCD3-205ENST00000464541 HIVEP1P15822 2718 aa0.24□□□□□ -2.37
PTCD3-205ENST00000464541 SPTBN5Q9NRC6 3674 aaKnown RBP0.24□□□□□ -2.37
PTCD3-205ENST00000464541 TLN2Q9Y4G6 2542 aa0.23□□□□□ -2.37
PTCD3-205ENST00000464541 LAMA5O15230 3695 aa0.23□□□□□ -2.37
PTCD3-205ENST00000464541 NBEAL1Q6ZS30 2694 aa0.22□□□□□ -2.37
PTCD3-205ENST00000464541 FAT3Q8TDW7 4589 aa0.22□□□□□ -2.37
PTCD3-205ENST00000464541 SMR3BP02814 79 aaPredicted RBP0.22□□□□□ -2.37
PTCD3-205ENST00000464541 KRTAP19-5Q3LI72 72 aa0.22□□□□□ -2.37
PTCD3-205ENST00000464541 TRIOO75962 3097 aa0.21□□□□□ -2.38
PTCD3-205ENST00000464541 KALRNO60229 2985 aa0.21□□□□□ -2.38
PTCD3-205ENST00000464541 DYNC2H1Q8NCM8 4307 aaKnown RBP0.2□□□□□ -2.38
PTCD3-205ENST00000464541 DNAH2Q9P225 4427 aa0.2□□□□□ -2.38
PTCD3-205ENST00000464541 CELSR3Q9NYQ7 3312 aa0.2□□□□□ -2.38
PTCD3-205ENST00000464541 FRYQ5TBA9 3013 aa0.19□□□□□ -2.38
PTCD3-205ENST00000464541 USP9XQ93008 2570 aaPredicted RBP0.19□□□□□ -2.38
PTCD3-205ENST00000464541 APOBP04114 4563 aaKnown RBP0.19□□□□□ -2.38
PTCD3-205ENST00000464541 PRCDQ00LT1 54 aa0.19□□□□□ -2.38
PTCD3-205ENST00000464541 DNAH6Q9C0G6 4158 aa0.19□□□□□ -2.38
PTCD3-205ENST00000464541 MAP1AP78559 2803 aaPredicted RBP0.18□□□□□ -2.38
PTCD3-205ENST00000464541 RHPN1-AS1Q9BWJ2 59 aa0.17□□□□□ -2.38
PTCD3-205ENST00000464541 MXRA5Q9NR99 2828 aa0.16□□□□□ -2.38
PTCD3-205ENST00000464541 USP9YO00507 2555 aaPredicted RBP0.15□□□□□ -2.38
PTCD3-205ENST00000464541 ZFHX4Q86UP3 3567 aa0.15□□□□□ -2.38
PTCD3-205ENST00000464541 K7EIM0 57 aa0.15□□□□□ -2.39
PTCD3-205ENST00000464541 VPS13DQ5THJ4 4388 aa0.15□□□□□ -2.39
PTCD3-205ENST00000464541 CHD7Q9P2D1 2997 aa0.15□□□□□ -2.39
PTCD3-205ENST00000464541 FAT1Q14517 4588 aa0.14□□□□□ -2.39
PTCD3-205ENST00000464541 NBPF19A0A087WUL8 3843 aa0.14□□□□□ -2.39
PTCD3-205ENST00000464541 DEFB104AQ8WTQ1 72 aa0.14□□□□□ -2.39
PTCD3-205ENST00000464541 DNAH7Q8WXX0 4024 aa0.14□□□□□ -2.39
PTCD3-205ENST00000464541 LAMA1P25391 3075 aa0.14□□□□□ -2.39
PTCD3-205ENST00000464541 MACF1Q9UPN3 7388 aaKnown RBP0.13□□□□□ -2.39
PTCD3-205ENST00000464541 WDR87Q6ZQQ6 2873 aa0.12□□□□□ -2.39
PTCD3-205ENST00000464541 DNAH1Q9P2D7 4330 aa0.12□□□□□ -2.39
PTCD3-205ENST00000464541 MT1HP80294 61 aa0.12□□□□□ -2.39
PTCD3-205ENST00000464541 DEFB136Q30KP8 78 aa0.12□□□□□ -2.39
PTCD3-205ENST00000464541 TTTY10Q9BZA0 68 aa0.11□□□□□ -2.39
PTCD3-205ENST00000464541 CRYBG3Q68DQ2 2970 aa0.09□□□□□ -2.39
PTCD3-205ENST00000464541 RELNP78509 3460 aa0.09□□□□□ -2.4
PTCD3-205ENST00000464541 SPTAN1Q13813 2472 aaKnown RBP0.08□□□□□ -2.4
PTCD3-205ENST00000464541 ITPR3Q14573 2671 aa0.08□□□□□ -2.4
PTCD3-205ENST00000464541 HERC1Q15751 4861 aa0.08□□□□□ -2.4
PTCD3-205ENST00000464541 ITPR1Q14643 2758 aa0.07□□□□□ -2.4
PTCD3-205ENST00000464541 KRTAP19-7Q3SYF9 63 aa0.07□□□□□ -2.4
PTCD3-205ENST00000464541 DNAH8Q96JB1 4490 aa0.07□□□□□ -2.4
PTCD3-205ENST00000464541 SSPOA2VEC9 5147 aa0.07□□□□□ -2.4
PTCD3-205ENST00000464541 CSMD1Q96PZ7 3565 aa0.05□□□□□ -2.4
PTCD3-205ENST00000464541 H3BUX3 64 aa0.04□□□□□ -2.4
PTCD3-205ENST00000464541 MUC2Q02817 5179 aa0.04□□□□□ -2.4
PTCD3-205ENST00000464541 H3BSH0 61 aa0.03□□□□□ -2.4
PTCD3-205ENST00000464541 MT1EP04732 61 aa0.03□□□□□ -2.4
PTCD3-205ENST00000464541 KRTAP6-1Q3LI64 71 aa0.03□□□□□ -2.4
PTCD3-205ENST00000464541 ADGRG4Q8IZF6 3080 aa0.02□□□□□ -2.41
PTCD3-205ENST00000464541 PCLOQ9Y6V0 5065 aa0.02□□□□□ -2.41
PTCD3-205ENST00000464541 A0A096LNI7 61 aa0.01□□□□□ -2.41
PTCD3-205ENST00000464541 KRTAP19-8Q3LI54 63 aa0.01□□□□□ -2.41
PTCD3-205ENST00000464541 TMEM167AQ8TBQ9 72 aa0.01□□□□□ -2.41
PTCD3-205ENST00000464541 DOPEY1Q5JWR5 2465 aa0.01□□□□□ -2.41
PTCD3-205ENST00000464541 DNAH10Q8IVF4 4471 aa0□□□□□ -2.41
PTCD3-205ENST00000464541 CMYA5Q8N3K9 4069 aa-0□□□□□ -2.41
PTCD3-205ENST00000464541 PLECQ15149 4684 aaKnown RBP-0.01□□□□□ -2.41
PTCD3-205ENST00000464541 MGAQ8IWI9 3026 aa-0.01□□□□□ -2.41
PTCD3-205ENST00000464541 MT1LQ93083 61 aa-0.02□□□□□ -2.41
PTCD3-205ENST00000464541 DMXL2Q8TDJ6 3036 aa-0.03□□□□□ -2.41
PTCD3-205ENST00000464541 KMT2CQ8NEZ4 4911 aaKnown RBP-0.03□□□□□ -2.41
PTCD3-205ENST00000464541 LAMA3Q16787 3333 aa-0.03□□□□□ -2.41
PTCD3-205ENST00000464541 CEP250Q9BV73 2442 aa-0.04□□□□□ -2.42
PTCD3-205ENST00000464541 C5orf42Q9H799 3197 aa-0.04□□□□□ -2.42
PTCD3-205ENST00000464541 HTN1P15515 57 aa-0.05□□□□□ -2.42
PTCD3-205ENST00000464541 DEFB133Q30KQ1 61 aa-0.05□□□□□ -2.42
PTCD3-205ENST00000464541 DEFB124Q8NES8 71 aa-0.05□□□□□ -2.42
PTCD3-205ENST00000464541 STARD9Q9P2P6 4700 aa-0.05□□□□□ -2.42
PTCD3-205ENST00000464541 MUC17Q685J3 4493 aa-0.06□□□□□ -2.42
PTCD3-205ENST00000464541 MT1XP80297 61 aa-0.06□□□□□ -2.42
PTCD3-205ENST00000464541 TEX15Q9BXT5 2789 aa-0.06□□□□□ -2.42
PTCD3-205ENST00000464541 LRBAP50851 2863 aa-0.08□□□□□ -2.42
PTCD3-205ENST00000464541 DYNC1H1Q14204 4646 aaKnown RBP-0.09□□□□□ -2.42
PTCD3-205ENST00000464541 MYO9AB2RTY4 2548 aa-0.1□□□□□ -2.42
PTCD3-205ENST00000464541 UBR4Q5T4S7 5183 aa-0.1□□□□□ -2.42
PTCD3-205ENST00000464541 SRCAPQ6ZRS2 3230 aa-0.1□□□□□ -2.43
PTCD3-205ENST00000464541 CFAP54Q96N23 3096 aa-0.1□□□□□ -2.43
PTCD3-205ENST00000464541 USH2AO75445 5202 aa-0.11□□□□□ -2.43
PTCD3-205ENST00000464541 DEFB4AO15263 64 aa-0.11□□□□□ -2.43
PTCD3-205ENST00000464541 DNAH17Q9UFH2 4485 aa-0.11□□□□□ -2.43
PTCD3-205ENST00000464541 TRRAPQ9Y4A5 3859 aa-0.11□□□□□ -2.43
PTCD3-205ENST00000464541 MUC12Q9UKN1 5478 aa-0.12□□□□□ -2.43
PTCD3-205ENST00000464541 CFAP46Q8IYW2 2715 aa-0.12□□□□□ -2.43
PTCD3-205ENST00000464541 RPL39P5Q59GN2 51 aa-0.13□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 180.5 ms