RNA–Protein interactions for RNA: ENST00000464454.1

CLK1-208, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 484 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-208ENST00000464454 IQGAP1P46940 1657 aa-0.19□□□□□ -2.44
CLK1-208ENST00000464454 UBR4Q5T4S7 5183 aa-0.19□□□□□ -2.44
CLK1-208ENST00000464454 STARD9Q9P2P6 4700 aa-0.19□□□□□ -2.44
CLK1-208ENST00000464454 A0A0C4DFX4 3053 aa-0.19□□□□□ -2.44
CLK1-208ENST00000464454 SPENQ96T58 3664 aaKnown RBP-0.2□□□□□ -2.44
CLK1-208ENST00000464454 MUC17Q685J3 4493 aa-0.2□□□□□ -2.44
CLK1-208ENST00000464454 SMR3BP02814 79 aaPredicted RBP-0.2□□□□□ -2.44
CLK1-208ENST00000464454 NBEAL1Q6ZS30 2694 aa-0.2□□□□□ -2.44
CLK1-208ENST00000464454 RYR1P21817 5038 aa-0.2□□□□□ -2.44
CLK1-208ENST00000464454 HTTP42858 3142 aa-0.2□□□□□ -2.44
CLK1-208ENST00000464454 NBEAQ8NFP9 2946 aa-0.2□□□□□ -2.44
CLK1-208ENST00000464454 RIF1Q5UIP0 2472 aaKnown RBP-0.21□□□□□ -2.44
CLK1-208ENST00000464454 HYDINQ4G0P3 5121 aa-0.21□□□□□ -2.44
CLK1-208ENST00000464454 LAMA1P25391 3075 aa-0.21□□□□□ -2.44
CLK1-208ENST00000464454 USH2AO75445 5202 aa-0.21□□□□□ -2.44
CLK1-208ENST00000464454 MYO18BQ8IUG5 2567 aa-0.21□□□□□ -2.44
CLK1-208ENST00000464454 MT1HP80294 61 aa-0.21□□□□□ -2.44
CLK1-208ENST00000464454 DEFB110Q30KQ9 67 aa-0.21□□□□□ -2.44
CLK1-208ENST00000464454 WFDC10BQ8IUB3 73 aa-0.21□□□□□ -2.44
CLK1-208ENST00000464454 ACACBO00763 2458 aa-0.21□□□□□ -2.44
CLK1-208ENST00000464454 NBEAL2Q6ZNJ1 2754 aa-0.21□□□□□ -2.44
CLK1-208ENST00000464454 SPTBN5Q9NRC6 3674 aaKnown RBP-0.22□□□□□ -2.44
CLK1-208ENST00000464454 TRIOO75962 3097 aa-0.22□□□□□ -2.44
CLK1-208ENST00000464454 UTP20O75691 2785 aaKnown RBP-0.22□□□□□ -2.44
CLK1-208ENST00000464454 FAM208AQ9UK61 1670 aaKnown RBP-0.22□□□□□ -2.44
CLK1-208ENST00000464454 EPPK1P58107 5090 aaKnown RBP-0.22□□□□□ -2.44
CLK1-208ENST00000464454 RYR2Q92736 4967 aa-0.23□□□□□ -2.45
CLK1-208ENST00000464454 RNF213Q63HN8 5207 aa-0.23□□□□□ -2.45
CLK1-208ENST00000464454 LRRK2Q5S007 2527 aa-0.23□□□□□ -2.45
CLK1-208ENST00000464454 BIRC6Q9NR09 4857 aa-0.23□□□□□ -2.45
CLK1-208ENST00000464454 MXRA5Q9NR99 2828 aa-0.23□□□□□ -2.45
CLK1-208ENST00000464454 NDUFA1O15239 70 aa-0.24□□□□□ -2.45
CLK1-208ENST00000464454 COL12A1Q99715 3063 aa-0.24□□□□□ -2.45
CLK1-208ENST00000464454 IQGAP2Q13576 1575 aa-0.24□□□□□ -2.45
CLK1-208ENST00000464454 KALRNO60229 2985 aa-0.24□□□□□ -2.45
CLK1-208ENST00000464454 WDR87Q6ZQQ6 2873 aa-0.25□□□□□ -2.45
CLK1-208ENST00000464454 DNAH7Q8WXX0 4024 aa-0.25□□□□□ -2.45
CLK1-208ENST00000464454 ATP7AQ04656 1500 aa-0.25□□□□□ -2.45
CLK1-208ENST00000464454 MGAM2Q2M2H8 2515 aa-0.25□□□□□ -2.45
CLK1-208ENST00000464454 LAMA2P24043 3122 aaKnown RBP-0.25□□□□□ -2.45
CLK1-208ENST00000464454 ABCA13Q86UQ4 5058 aa-0.26□□□□□ -2.45
CLK1-208ENST00000464454 KRTAP19-8Q3LI54 63 aa-0.26□□□□□ -2.45
CLK1-208ENST00000464454 KRTAP20-2Q3LI61 65 aa-0.26□□□□□ -2.45
CLK1-208ENST00000464454 TOMM5Q8N4H5 51 aa-0.26□□□□□ -2.45
CLK1-208ENST00000464454 NIPBLQ6KC79 2804 aaeCLIP-0.26□□□□□ -2.45
CLK1-208ENST00000464454 COL6A5A8TX70 2615 aa-0.26□□□□□ -2.45
CLK1-208ENST00000464454 DNHD1Q96M86 4753 aa-0.26□□□□□ -2.45
CLK1-208ENST00000464454 A0A1B0GUL6 1792 aa-0.27□□□□□ -2.45
CLK1-208ENST00000464454 CLPSL2Q6UWE3 100 aa-0.27□□□□□ -2.45
CLK1-208ENST00000464454 DDX60Q8IY21 1712 aaKnown RBP-0.27□□□□□ -2.45
CLK1-208ENST00000464454 RELNP78509 3460 aa-0.28□□□□□ -2.45
CLK1-208ENST00000464454 PLECQ15149 4684 aaKnown RBP-0.28□□□□□ -2.45
CLK1-208ENST00000464454 CELSR3Q9NYQ7 3312 aa-0.28□□□□□ -2.45
CLK1-208ENST00000464454 MT4P47944 62 aa-0.28□□□□□ -2.45
CLK1-208ENST00000464454 ITPR2Q14571 2701 aa-0.28□□□□□ -2.45
CLK1-208ENST00000464454 SAMD9LQ8IVG5 1584 aa-0.28□□□□□ -2.45
CLK1-208ENST00000464454 ITPR3Q14573 2671 aa-0.29□□□□□ -2.46
CLK1-208ENST00000464454 MT1EP04732 61 aa-0.29□□□□□ -2.46
CLK1-208ENST00000464454 DNAH10Q8IVF4 4471 aa-0.29□□□□□ -2.46
CLK1-208ENST00000464454 USP9XQ93008 2570 aaPredicted RBP-0.3□□□□□ -2.46
CLK1-208ENST00000464454 DYNC1H1Q14204 4646 aaKnown RBP-0.3□□□□□ -2.46
CLK1-208ENST00000464454 TLN2Q9Y4G6 2542 aa-0.3□□□□□ -2.46
CLK1-208ENST00000464454 USP9YO00507 2555 aaPredicted RBP-0.3□□□□□ -2.46
CLK1-208ENST00000464454 CLTCL1P53675 1640 aa-0.31□□□□□ -2.46
CLK1-208ENST00000464454 CCDC168Q8NDH2 2452 aa-0.31□□□□□ -2.46
CLK1-208ENST00000464454 POLR2KP53803 58 aaKnown RBP-0.32□□□□□ -2.46
CLK1-208ENST00000464454 DEFB1P60022 68 aa-0.32□□□□□ -2.46
CLK1-208ENST00000464454 DNAH17Q9UFH2 4485 aa-0.33□□□□□ -2.46
CLK1-208ENST00000464454 CMYA5Q8N3K9 4069 aa-0.34□□□□□ -2.46
CLK1-208ENST00000464454 FRYQ5TBA9 3013 aa-0.34□□□□□ -2.46
CLK1-208ENST00000464454 MT1XP80297 61 aa-0.35□□□□□ -2.47
CLK1-208ENST00000464454 MT1LQ93083 61 aa-0.35□□□□□ -2.47
CLK1-208ENST00000464454 CHD7Q9P2D1 2997 aa-0.35□□□□□ -2.47
CLK1-208ENST00000464454 LAMA3Q16787 3333 aa-0.36□□□□□ -2.47
CLK1-208ENST00000464454 ITPR1Q14643 2758 aa-0.36□□□□□ -2.47
CLK1-208ENST00000464454 SPART-AS1P0CW21 52 aa-0.37□□□□□ -2.47
CLK1-208ENST00000464454 CSMD1Q96PZ7 3565 aa-0.37□□□□□ -2.47
CLK1-208ENST00000464454 TOP2AP11388 1531 aaKnown RBP-0.38□□□□□ -2.47
CLK1-208ENST00000464454 ZFHX4Q86UP3 3567 aa-0.39□□□□□ -2.47
CLK1-208ENST00000464454 TEX15Q9BXT5 2789 aa-0.39□□□□□ -2.47
CLK1-208ENST00000464454 SRCAPQ6ZRS2 3230 aa-0.39□□□□□ -2.47
CLK1-208ENST00000464454 C5orf42Q9H799 3197 aa-0.39□□□□□ -2.47
CLK1-208ENST00000464454 DMXL2Q8TDJ6 3036 aa-0.4□□□□□ -2.47
CLK1-208ENST00000464454 ADGRG4Q8IZF6 3080 aa-0.4□□□□□ -2.47
CLK1-208ENST00000464454 MGAQ8IWI9 3026 aa-0.42□□□□□ -2.48
CLK1-208ENST00000464454 KRTAP20-1Q3LI63 56 aa-0.42□□□□□ -2.48
CLK1-208ENST00000464454 CEP295Q9C0D2 2601 aa-0.42□□□□□ -2.48
CLK1-208ENST00000464454 CFAP46Q8IYW2 2715 aa-0.43□□□□□ -2.48
CLK1-208ENST00000464454 TRRAPQ9Y4A5 3859 aa-0.43□□□□□ -2.48
CLK1-208ENST00000464454 SMG1Q96Q15 3661 aaKnown RBP-0.43□□□□□ -2.48
CLK1-208ENST00000464454 LEAP2Q969E1 77 aa-0.44□□□□□ -2.48
CLK1-208ENST00000464454 DNAH5Q8TE73 4624 aa-0.44□□□□□ -2.48
CLK1-208ENST00000464454 SPTAN1Q13813 2472 aaKnown RBP-0.45□□□□□ -2.48
CLK1-208ENST00000464454 CRYBG3Q68DQ2 2970 aa-0.45□□□□□ -2.48
CLK1-208ENST00000464454 BOD1L1Q8NFC6 3051 aa-0.46□□□□□ -2.48
CLK1-208ENST00000464454 LRBAP50851 2863 aa-0.46□□□□□ -2.48
CLK1-208ENST00000464454 RPL39P62891 51 aaKnown RBP-0.46□□□□□ -2.48
CLK1-208ENST00000464454 MYO15AQ9UKN7 3530 aa-0.46□□□□□ -2.48
CLK1-208ENST00000464454 EYSQ5T1H1 3165 aa-0.47□□□□□ -2.48
CLK1-208ENST00000464454 MROH2BQ7Z745 1585 aa-0.48□□□□□ -2.49
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms