RNA–Protein interactions for RNA: ENST00000463478.1

HERC4-208, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 3

Gene HERC4, Length 546 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-208ENST00000463478 H1FX-AS1Q4G0G2 97 aa0.48□□□□□ -2.33
HERC4-208ENST00000463478 FXYD6Q9H0Q3 95 aa0.48□□□□□ -2.33
HERC4-208ENST00000463478 NREPQ16612 68 aa0.47□□□□□ -2.33
HERC4-208ENST00000463478 AGLP35573 1532 aa0.47□□□□□ -2.33
HERC4-208ENST00000463478 CD163L1Q9NR16 1453 aa0.47□□□□□ -2.33
HERC4-208ENST00000463478 HEPN1Q6WQI6 88 aa0.46□□□□□ -2.34
HERC4-208ENST00000463478 RGPD2P0DJD1 1756 aa0.46□□□□□ -2.34
HERC4-208ENST00000463478 DDX60Q8IY21 1712 aaKnown RBP0.46□□□□□ -2.34
HERC4-208ENST00000463478 C4AP0C0L4 1744 aa0.44□□□□□ -2.34
HERC4-208ENST00000463478 TRPM2O94759 1503 aa0.44□□□□□ -2.34
HERC4-208ENST00000463478 FANCD2Q9BXW9 1451 aa0.44□□□□□ -2.34
HERC4-208ENST00000463478 C3orf79P0CE67 100 aa0.44□□□□□ -2.34
HERC4-208ENST00000463478 ABCC8Q09428 1581 aa0.44□□□□□ -2.34
HERC4-208ENST00000463478 NFAT5O94916 1531 aa0.43□□□□□ -2.34
HERC4-208ENST00000463478 CCDC180Q9P1Z9 1646 aa0.43□□□□□ -2.34
HERC4-208ENST00000463478 KLK9Q2XQG4 91 aa0.43□□□□□ -2.34
HERC4-208ENST00000463478 LMTK2Q8IWU2 1503 aa0.43□□□□□ -2.34
HERC4-208ENST00000463478 BCORQ6W2J9 1755 aa0.42□□□□□ -2.34
HERC4-208ENST00000463478 NDUFA4O00483 81 aa0.42□□□□□ -2.34
HERC4-208ENST00000463478 LMO7Q8WWI1 1683 aa0.42□□□□□ -2.34
HERC4-208ENST00000463478 ABCC6O95255 1503 aa0.42□□□□□ -2.34
HERC4-208ENST00000463478 DDX60LQ5H9U9 1706 aaKnown RBP0.41□□□□□ -2.34
HERC4-208ENST00000463478 INO80Q9ULG1 1556 aaPredicted RBP0.4□□□□□ -2.34
HERC4-208ENST00000463478 MRPL33O75394 65 aaKnown RBP0.4□□□□□ -2.35
HERC4-208ENST00000463478 WFDC13Q8IUB5 93 aa0.4□□□□□ -2.35
HERC4-208ENST00000463478 CDC42BPAQ5VT25 1732 aa0.39□□□□□ -2.35
HERC4-208ENST00000463478 NDUFA3O95167 84 aa0.39□□□□□ -2.35
HERC4-208ENST00000463478 DEFA5Q01523 94 aa0.39□□□□□ -2.35
HERC4-208ENST00000463478 ARFGEF2Q9Y6D5 1785 aa0.39□□□□□ -2.35
HERC4-208ENST00000463478 LOC730098B7Z3J9 87 aa0.38□□□□□ -2.35
HERC4-208ENST00000463478 MYO5CQ9NQX4 1742 aa0.38□□□□□ -2.35
HERC4-208ENST00000463478 DEFB131BA0A096LNP1 70 aa0.37□□□□□ -2.35
HERC4-208ENST00000463478 EIF2AK4Q9P2K8 1649 aaKnown RBP0.37□□□□□ -2.35
HERC4-208ENST00000463478 H3BVH4 76 aa0.35□□□□□ -2.35
HERC4-208ENST00000463478 M0R2T5 61 aa0.35□□□□□ -2.35
HERC4-208ENST00000463478 ATXN8Q156A1 80 aa0.35□□□□□ -2.35
HERC4-208ENST00000463478 KCNQ1DNQ9H478 68 aa0.35□□□□□ -2.35
HERC4-208ENST00000463478 ERICH3Q5RHP9 1530 aa0.34□□□□□ -2.35
HERC4-208ENST00000463478 KIF1AQ12756 1690 aa0.34□□□□□ -2.35
HERC4-208ENST00000463478 PLXNC1O60486 1568 aa0.34□□□□□ -2.36
HERC4-208ENST00000463478 UBL5Q9BZL1 73 aa0.34□□□□□ -2.36
HERC4-208ENST00000463478 PRM1P04553 51 aa0.32□□□□□ -2.36
HERC4-208ENST00000463478 LINC00158P58513 81 aa0.32□□□□□ -2.36
HERC4-208ENST00000463478 LYNX1G3V0Z9 82 aa0.31□□□□□ -2.36
HERC4-208ENST00000463478 DEFB114Q30KQ6 69 aa0.3□□□□□ -2.36
HERC4-208ENST00000463478 SPRR2FQ96RM1 72 aa0.3□□□□□ -2.36
HERC4-208ENST00000463478 ABCA9Q8IUA7 1624 aa0.3□□□□□ -2.36
HERC4-208ENST00000463478 FAM208AQ9UK61 1670 aaKnown RBP0.3□□□□□ -2.36
HERC4-208ENST00000463478 DEFB135Q30KP9 77 aa0.29□□□□□ -2.36
HERC4-208ENST00000463478 ENHOQ6UWT2 76 aa0.29□□□□□ -2.36
HERC4-208ENST00000463478 KRTAP20-2Q3LI61 65 aa0.28□□□□□ -2.36
HERC4-208ENST00000463478 CDC42BPGQ6DT37 1551 aa0.28□□□□□ -2.37
HERC4-208ENST00000463478 GNG13Q9P2W3 67 aa0.27□□□□□ -2.37
HERC4-208ENST00000463478 IQGAP3Q86VI3 1631 aa0.27□□□□□ -2.37
HERC4-208ENST00000463478 A0A087WWC5 75 aa0.26□□□□□ -2.37
HERC4-208ENST00000463478 SMIM31A0A1B0GVY4 71 aa0.26□□□□□ -2.37
HERC4-208ENST00000463478 SMR3BP02814 79 aaPredicted RBP0.26□□□□□ -2.37
HERC4-208ENST00000463478 ETDCA0A1B0GVM5 59 aa0.25□□□□□ -2.37
HERC4-208ENST00000463478 H0YAA0 97 aa0.25□□□□□ -2.37
HERC4-208ENST00000463478 SMIM5Q71RC9 77 aa0.25□□□□□ -2.37
HERC4-208ENST00000463478 HILPDAQ9Y5L2 63 aa0.25□□□□□ -2.37
HERC4-208ENST00000463478 C4BP0C0L5 1744 aa0.24□□□□□ -2.37
HERC4-208ENST00000463478 DUOX1Q9NRD9 1551 aa0.24□□□□□ -2.37
HERC4-208ENST00000463478 H0YGG7 62 aa0.23□□□□□ -2.37
HERC4-208ENST00000463478 A0A1B0GUL6 1792 aa0.23□□□□□ -2.37
HERC4-208ENST00000463478 IQGAP2Q13576 1575 aa0.22□□□□□ -2.37
HERC4-208ENST00000463478 ABCA10Q8WWZ4 1543 aa0.2□□□□□ -2.38
HERC4-208ENST00000463478 CRIP1P50238 77 aa0.2□□□□□ -2.38
HERC4-208ENST00000463478 SYCP2Q9BX26 1530 aa0.18□□□□□ -2.38
HERC4-208ENST00000463478 K7EMI3 77 aa0.18□□□□□ -2.38
HERC4-208ENST00000463478 DEFB124Q8NES8 71 aa0.18□□□□□ -2.38
HERC4-208ENST00000463478 TOP2AP11388 1531 aaKnown RBP0.18□□□□□ -2.38
HERC4-208ENST00000463478 IAPPP10997 89 aa0.17□□□□□ -2.38
HERC4-208ENST00000463478 DEFB130BP0DP73 79 aa0.16□□□□□ -2.38
HERC4-208ENST00000463478 DEFB130AP0DP74 79 aa0.16□□□□□ -2.38
HERC4-208ENST00000463478 S100ZQ8WXG8 99 aa0.16□□□□□ -2.38
HERC4-208ENST00000463478 LINC01549A6NIU2 74 aa0.15□□□□□ -2.39
HERC4-208ENST00000463478 SERF2P84101 59 aa0.14□□□□□ -2.39
HERC4-208ENST00000463478 MT1HP80294 61 aa0.12□□□□□ -2.39
HERC4-208ENST00000463478 PRLHP81277 87 aa0.12□□□□□ -2.39
HERC4-208ENST00000463478 C9orf92A6NGG3 77 aa0.1□□□□□ -2.39
HERC4-208ENST00000463478 PRXQ9BXM0 1461 aa0.1□□□□□ -2.39
HERC4-208ENST00000463478 MINOS1Q5TGZ0 78 aa0.09□□□□□ -2.4
HERC4-208ENST00000463478 NCBP2-AS2Q69YL0 99 aa0.09□□□□□ -2.4
HERC4-208ENST00000463478 SPRR2GQ9BYE4 73 aa0.09□□□□□ -2.4
HERC4-208ENST00000463478 DEFB104AQ8WTQ1 72 aa0.08□□□□□ -2.4
HERC4-208ENST00000463478 NMES1Q9C002 83 aa0.08□□□□□ -2.4
HERC4-208ENST00000463478 KRTAP19-2Q3LHN2 52 aa0.07□□□□□ -2.4
HERC4-208ENST00000463478 MT1HL1P0DM35 61 aa0.06□□□□□ -2.4
HERC4-208ENST00000463478 WT1-ASQ06250 92 aa0.06□□□□□ -2.4
HERC4-208ENST00000463478 ANKRD36CQ5JPF3 1778 aa0.05□□□□□ -2.4
HERC4-208ENST00000463478 SFTA3P0C7M3 94 aa0.05□□□□□ -2.4
HERC4-208ENST00000463478 H3BUA1 57 aa0.04□□□□□ -2.4
HERC4-208ENST00000463478 C6orf48Q9UBA6 75 aa0.04□□□□□ -2.4
HERC4-208ENST00000463478 MT1FP04733 61 aa0.03□□□□□ -2.4
HERC4-208ENST00000463478 S4R3F8 94 aa0.03□□□□□ -2.4
HERC4-208ENST00000463478 MT2AP02795 61 aa0.02□□□□□ -2.41
HERC4-208ENST00000463478 RPS27P42677 84 aaKnown RBP0.02□□□□□ -2.41
HERC4-208ENST00000463478 RPS27LQ71UM5 84 aaKnown RBP0.02□□□□□ -2.41
HERC4-208ENST00000463478 TIMM8BQ9Y5J9 83 aaPredicted RBP0.01□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms