RNA–Protein interactions for RNA: ENST00000463147.1

USH2A-203, Transcript of usherin, humanhuman

TSL 2

Gene USH2A, Length 618 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-203ENST00000463147 LOC400499M0QZD8 3231 aa0.89□□□□□ -2.27
USH2A-203ENST00000463147 CELSR1Q9NYQ6 3014 aa0.89□□□□□ -2.27
USH2A-203ENST00000463147 NF1P21359 2839 aa0.88□□□□□ -2.27
USH2A-203ENST00000463147 UTP20O75691 2785 aaKnown RBP0.88□□□□□ -2.27
USH2A-203ENST00000463147 LAMA5O15230 3695 aa0.88□□□□□ -2.27
USH2A-203ENST00000463147 ASPMQ8IZT6 3477 aa0.88□□□□□ -2.27
USH2A-203ENST00000463147 ADGRG4Q8IZF6 3080 aa0.88□□□□□ -2.27
USH2A-203ENST00000463147 ACANP16112 2415 aa0.88□□□□□ -2.27
USH2A-203ENST00000463147 TGP01266 2768 aa0.88□□□□□ -2.27
USH2A-203ENST00000463147 LRRK2Q5S007 2527 aa0.87□□□□□ -2.27
USH2A-203ENST00000463147 NBEAL2Q6ZNJ1 2754 aa0.87□□□□□ -2.27
USH2A-203ENST00000463147 STAB2Q8WWQ8 2551 aa0.87□□□□□ -2.27
USH2A-203ENST00000463147 ATMQ13315 3056 aa0.87□□□□□ -2.27
USH2A-203ENST00000463147 CRYBG3Q68DQ2 2970 aa0.87□□□□□ -2.27
USH2A-203ENST00000463147 HECTD1Q9ULT8 2610 aa0.87□□□□□ -2.27
USH2A-203ENST00000463147 ANK3Q12955 4377 aaKnown RBP0.87□□□□□ -2.27
USH2A-203ENST00000463147 ACACBO00763 2458 aa0.87□□□□□ -2.27
USH2A-203ENST00000463147 CACNA1AO00555 2505 aa0.86□□□□□ -2.27
USH2A-203ENST00000463147 USP9YO00507 2555 aaPredicted RBP0.86□□□□□ -2.27
USH2A-203ENST00000463147 KRTAP19-3Q7Z4W3 81 aa0.86□□□□□ -2.27
USH2A-203ENST00000463147 TENM4Q6N022 2769 aa0.86□□□□□ -2.27
USH2A-203ENST00000463147 FASNP49327 2511 aaKnown RBP0.86□□□□□ -2.27
USH2A-203ENST00000463147 ABCA12Q86UK0 2595 aa0.86□□□□□ -2.27
USH2A-203ENST00000463147 EPG5Q9HCE0 2579 aa0.86□□□□□ -2.27
USH2A-203ENST00000463147 RELNP78509 3460 aa0.85□□□□□ -2.27
USH2A-203ENST00000463147 DNAH8Q96JB1 4490 aa0.85□□□□□ -2.27
USH2A-203ENST00000463147 SRRM2Q9UQ35 2752 aaKnown RBP0.85□□□□□ -2.27
USH2A-203ENST00000463147 FBN2P35556 2912 aa0.85□□□□□ -2.27
USH2A-203ENST00000463147 SETD2Q9BYW2 2564 aaPredicted RBP0.85□□□□□ -2.27
USH2A-203ENST00000463147 SVEP1Q4LDE5 3571 aa0.85□□□□□ -2.27
USH2A-203ENST00000463147 MEGF8Q7Z7M0 2845 aa0.85□□□□□ -2.27
USH2A-203ENST00000463147 CFAP46Q8IYW2 2715 aa0.85□□□□□ -2.27
USH2A-203ENST00000463147 NBPF19A0A087WUL8 3843 aa0.85□□□□□ -2.27
USH2A-203ENST00000463147 HIVEP1P15822 2718 aa0.84□□□□□ -2.27
USH2A-203ENST00000463147 MYO18BQ8IUG5 2567 aa0.84□□□□□ -2.28
USH2A-203ENST00000463147 BSNQ9UPA5 3926 aa0.83□□□□□ -2.28
USH2A-203ENST00000463147 NIPBLQ6KC79 2804 aaeCLIP0.83□□□□□ -2.28
USH2A-203ENST00000463147 DNAH17Q9UFH2 4485 aa0.83□□□□□ -2.28
USH2A-203ENST00000463147 CUBNO60494 3623 aa0.83□□□□□ -2.28
USH2A-203ENST00000463147 VWFP04275 2813 aa0.83□□□□□ -2.28
USH2A-203ENST00000463147 MUC3AQ02505 3323 aa0.82□□□□□ -2.28
USH2A-203ENST00000463147 COL7A1Q02388 2944 aa0.82□□□□□ -2.28
USH2A-203ENST00000463147 EYSQ5T1H1 3165 aa0.82□□□□□ -2.28
USH2A-203ENST00000463147 NOTCH1P46531 2555 aa0.82□□□□□ -2.28
USH2A-203ENST00000463147 DNAH10Q8IVF4 4471 aa0.82□□□□□ -2.28
USH2A-203ENST00000463147 SMR3BP02814 79 aaPredicted RBP0.82□□□□□ -2.28
USH2A-203ENST00000463147 VPS13CQ709C8 3753 aa0.82□□□□□ -2.28
USH2A-203ENST00000463147 PDZD2O15018 2839 aa0.82□□□□□ -2.28
USH2A-203ENST00000463147 ITPR3Q14573 2671 aa0.82□□□□□ -2.28
USH2A-203ENST00000463147 NBEAL1Q6ZS30 2694 aa0.82□□□□□ -2.28
USH2A-203ENST00000463147 CSMD2Q7Z408 3487 aa0.81□□□□□ -2.28
USH2A-203ENST00000463147 MXRA5Q9NR99 2828 aa0.81□□□□□ -2.28
USH2A-203ENST00000463147 POLQO75417 2590 aa0.81□□□□□ -2.28
USH2A-203ENST00000463147 DNAH9Q9NYC9 4486 aa0.81□□□□□ -2.28
USH2A-203ENST00000463147 FRAS1Q86XX4 4008 aa0.81□□□□□ -2.28
USH2A-203ENST00000463147 DYNC2H1Q8NCM8 4307 aaKnown RBP0.81□□□□□ -2.28
USH2A-203ENST00000463147 HUWE1Q7Z6Z7 4374 aaKnown RBP0.81□□□□□ -2.28
USH2A-203ENST00000463147 CSMD3Q7Z407 3707 aa0.81□□□□□ -2.28
USH2A-203ENST00000463147 ZNF292O60281 2723 aa0.8□□□□□ -2.28
USH2A-203ENST00000463147 CMYA5Q8N3K9 4069 aa0.8□□□□□ -2.28
USH2A-203ENST00000463147 DNAH2Q9P225 4427 aa0.8□□□□□ -2.28
USH2A-203ENST00000463147 BDP1A6H8Y1 2624 aa0.8□□□□□ -2.28
USH2A-203ENST00000463147 FLNAP21333 2647 aaKnown RBP0.8□□□□□ -2.28
USH2A-203ENST00000463147 TENM3Q9P273 2699 aa0.8□□□□□ -2.28
USH2A-203ENST00000463147 DNAH11Q96DT5 4516 aa0.8□□□□□ -2.28
USH2A-203ENST00000463147 KRTAP8-1Q8IUC2 63 aa0.8□□□□□ -2.28
USH2A-203ENST00000463147 TRRAPQ9Y4A5 3859 aa0.8□□□□□ -2.28
USH2A-203ENST00000463147 MYCBP2O75592 4640 aa0.8□□□□□ -2.28
USH2A-203ENST00000463147 MAST4O15021 2626 aa0.8□□□□□ -2.28
USH2A-203ENST00000463147 ATRQ13535 2644 aa0.8□□□□□ -2.28
USH2A-203ENST00000463147 TEP1Q99973 2627 aaKnown RBP0.8□□□□□ -2.28
USH2A-203ENST00000463147 ANK2Q01484 3957 aa0.8□□□□□ -2.28
USH2A-203ENST00000463147 DNAH3Q8TD57 4116 aa0.79□□□□□ -2.28
USH2A-203ENST00000463147 NSD1Q96L73 2696 aaPredicted RBP0.79□□□□□ -2.28
USH2A-203ENST00000463147 DNAH6Q9C0G6 4158 aa0.79□□□□□ -2.28
USH2A-203ENST00000463147 ITPR2Q14571 2701 aa0.79□□□□□ -2.28
USH2A-203ENST00000463147 AHNAKQ09666 5890 aaKnown RBP0.79□□□□□ -2.28
USH2A-203ENST00000463147 ZNF469Q96JG9 3925 aaPredicted RBP0.78□□□□□ -2.28
USH2A-203ENST00000463147 MGAM2Q2M2H8 2515 aa0.78□□□□□ -2.28
USH2A-203ENST00000463147 M0R2T5 61 aa0.78□□□□□ -2.28
USH2A-203ENST00000463147 STAB1Q9NY15 2570 aa0.78□□□□□ -2.28
USH2A-203ENST00000463147 FLNBO75369 2602 aaKnown RBP0.78□□□□□ -2.29
USH2A-203ENST00000463147 USP24Q9UPU5 2620 aa0.78□□□□□ -2.29
USH2A-203ENST00000463147 ZANQ9Y493 2812 aa0.78□□□□□ -2.29
USH2A-203ENST00000463147 PRKDCP78527 4128 aaKnown RBP0.78□□□□□ -2.29
USH2A-203ENST00000463147 SACSQ9NZJ4 4579 aa0.77□□□□□ -2.29
USH2A-203ENST00000463147 PKD1L1Q8TDX9 2849 aa0.77□□□□□ -2.29
USH2A-203ENST00000463147 IGSF10Q6WRI0 2623 aa0.75□□□□□ -2.29
USH2A-203ENST00000463147 APOBP04114 4563 aaKnown RBP0.74□□□□□ -2.29
USH2A-203ENST00000463147 LYSTQ99698 3801 aa0.74□□□□□ -2.29
USH2A-203ENST00000463147 KRTAP2-3P0C7H8 128 aa0.74□□□□□ -2.29
USH2A-203ENST00000463147 KRTAP2-4Q9BYR9 128 aa0.74□□□□□ -2.29
USH2A-203ENST00000463147 KRTAP2-1Q9BYU5 128 aa0.74□□□□□ -2.29
USH2A-203ENST00000463147 PKHD1L1Q86WI1 4243 aa0.74□□□□□ -2.29
USH2A-203ENST00000463147 DNAH7Q8WXX0 4024 aa0.74□□□□□ -2.29
USH2A-203ENST00000463147 HECTD4Q9Y4D8 3996 aa0.74□□□□□ -2.29
USH2A-203ENST00000463147 DNHD1Q96M86 4753 aa0.73□□□□□ -2.29
USH2A-203ENST00000463147 KMT2AQ03164 3969 aa0.73□□□□□ -2.29
USH2A-203ENST00000463147 STARD9Q9P2P6 4700 aa0.73□□□□□ -2.29
USH2A-203ENST00000463147 MUC5BQ9HC84 5762 aaPredicted RBP0.73□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms