RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 LINC00846Q9NV44 126 aa2.57□□□□□ -2
CSMD3-205ENST00000462254 FAM236AA0A1B0GUQ0 79 aa2.56□□□□□ -2
CSMD3-205ENST00000462254 FAM236BA0A1B0GV22 79 aa2.56□□□□□ -2
CSMD3-205ENST00000462254 SPINK1P00995 79 aa2.56□□□□□ -2
CSMD3-205ENST00000462254 LCE3EQ5T5B0 92 aa2.56□□□□□ -2
CSMD3-205ENST00000462254 SERP2Q8N6R1 65 aa2.56□□□□□ -2
CSMD3-205ENST00000462254 Q96NJ1 140 aa2.56□□□□□ -2
CSMD3-205ENST00000462254 R4GN34 69 aa2.56□□□□□ -2
CSMD3-205ENST00000462254 RPS29P62273 56 aaKnown RBP2.55□□□□□ -2
CSMD3-205ENST00000462254 SPAG11AQ6PDA7 123 aa2.55□□□□□ -2
CSMD3-205ENST00000462254 LIMD2Q9BT23 127 aa2.55□□□□□ -2
CSMD3-205ENST00000462254 DMBT1Q9UGM3 2413 aaPredicted RBP2.54□□□□□ -2
CSMD3-205ENST00000462254 NDUFC1O43677 76 aa2.54□□□□□ -2
CSMD3-205ENST00000462254 ATP5EP56381 51 aaPredicted RBP2.54□□□□□ -2
CSMD3-205ENST00000462254 ASB16-AS1Q495Z4 193 aa2.54□□□□□ -2
CSMD3-205ENST00000462254 RETNLBQ9BQ08 111 aa2.54□□□□□ -2
CSMD3-205ENST00000462254 LINC00472Q9H8W2 130 aa2.54□□□□□ -2
CSMD3-205ENST00000462254 NREPQ16612 68 aa2.53□□□□□ -2
CSMD3-205ENST00000462254 UBL5Q9BZL1 73 aa2.53□□□□□ -2
CSMD3-205ENST00000462254 PCLOQ9Y6V0 5065 aa2.53□□□□□ -2
CSMD3-205ENST00000462254 SERP1Q9Y6X1 66 aa2.52□□□□□ -2.01
CSMD3-205ENST00000462254 IGKV3D-7A0A0C4DH55 119 aa2.51□□□□□ -2.01
CSMD3-205ENST00000462254 IGKV4-1P06312 121 aa2.51□□□□□ -2.01
CSMD3-205ENST00000462254 A8MU10 97 aa2.5□□□□□ -2.01
CSMD3-205ENST00000462254 K7EQZ3 153 aa2.5□□□□□ -2.01
CSMD3-205ENST00000462254 HRES1P13985 223 aa2.49□□□□□ -2.01
CSMD3-205ENST00000462254 KRTAP5-1Q6L8H4 278 aa2.48□□□□□ -2.01
CSMD3-205ENST00000462254 FP248Q71RG6 208 aaPredicted RBP2.48□□□□□ -2.01
CSMD3-205ENST00000462254 A0A087WVE0 104 aa2.47□□□□□ -2.01
CSMD3-205ENST00000462254 MMP24-AS1A0A0U1RRL7 71 aa2.47□□□□□ -2.01
CSMD3-205ENST00000462254 C9orf92A6NGG3 77 aa2.47□□□□□ -2.01
CSMD3-205ENST00000462254 ROMO1P60602 79 aa2.47□□□□□ -2.01
CSMD3-205ENST00000462254 NDUFB1O75438 58 aa2.46□□□□□ -2.02
CSMD3-205ENST00000462254 KRTAP12-2P59991 146 aa2.46□□□□□ -2.02
CSMD3-205ENST00000462254 KLKP1Q107X0 134 aa2.46□□□□□ -2.02
CSMD3-205ENST00000462254 KRTAP13-3Q3SY46 172 aa2.46□□□□□ -2.02
CSMD3-205ENST00000462254 C20orf166-AS1Q96NR2 134 aa2.46□□□□□ -2.02
CSMD3-205ENST00000462254 HCG22E2RYF7 251 aa2.45□□□□□ -2.02
CSMD3-205ENST00000462254 TPRXLQ17RH7 258 aa2.45□□□□□ -2.02
CSMD3-205ENST00000462254 WFDC13Q8IUB5 93 aa2.45□□□□□ -2.02
CSMD3-205ENST00000462254 LPAP08519 4548 aa2.44□□□□□ -2.02
CSMD3-205ENST00000462254 hDV103S1A0JD37 113 aa2.44□□□□□ -2.02
CSMD3-205ENST00000462254 CASC2Q6XLA1 102 aa2.44□□□□□ -2.02
CSMD3-205ENST00000462254 C20orf197Q8N268 126 aa2.44□□□□□ -2.02
CSMD3-205ENST00000462254 PRO2289Q9P1D8 64 aa2.44□□□□□ -2.02
CSMD3-205ENST00000462254 TMEM254Q8TBM7 123 aa2.43□□□□□ -2.02
CSMD3-205ENST00000462254 MRPL34Q9BQ48 92 aaKnown RBP2.43□□□□□ -2.02
CSMD3-205ENST00000462254 HERC1Q15751 4861 aa2.43□□□□□ -2.02
CSMD3-205ENST00000462254 H7BZZ5 65 aa2.41□□□□□ -2.02
CSMD3-205ENST00000462254 LRP2P98164 4655 aa2.41□□□□□ -2.02
CSMD3-205ENST00000462254 A6NN06 94 aa2.4□□□□□ -2.03
CSMD3-205ENST00000462254 RPL37P61927 97 aaKnown RBP2.4□□□□□ -2.03
CSMD3-205ENST00000462254 ATP11AUNQ6ZP68 121 aa2.39□□□□□ -2.03
CSMD3-205ENST00000462254 HMCN2Q8NDA2 5059 aa2.39□□□□□ -2.03
CSMD3-205ENST00000462254 Q1T7F1 81 aa2.37□□□□□ -2.03
CSMD3-205ENST00000462254 ZCCHC13Q8WW36 166 aaKnown RBP2.37□□□□□ -2.03
CSMD3-205ENST00000462254 TRAV22A0A0B4J277 110 aa2.36□□□□□ -2.03
CSMD3-205ENST00000462254 PCOTHQ58A44 107 aa2.36□□□□□ -2.03
CSMD3-205ENST00000462254 KRTAP4-1Q9BYQ7 146 aa2.36□□□□□ -2.03
CSMD3-205ENST00000462254 CYSTM1Q9H1C7 97 aa2.36□□□□□ -2.03
CSMD3-205ENST00000462254 TP53AIP1Q9HCN2 124 aa2.36□□□□□ -2.03
CSMD3-205ENST00000462254 H0Y9P7 68 aa2.35□□□□□ -2.03
CSMD3-205ENST00000462254 KRTAP4-4Q9BYR3 166 aa2.35□□□□□ -2.03
CSMD3-205ENST00000462254 SNURFQ9Y675 71 aa2.35□□□□□ -2.03
CSMD3-205ENST00000462254 CYP4F30PQ9H0H9 118 aa2.34□□□□□ -2.03
CSMD3-205ENST00000462254 MUC17Q685J3 4493 aa2.34□□□□□ -2.04
CSMD3-205ENST00000462254 P0C880 135 aa2.33□□□□□ -2.04
CSMD3-205ENST00000462254 LINC00208Q96KT6 92 aa2.33□□□□□ -2.04
CSMD3-205ENST00000462254 SPINK7P58062 85 aa2.32□□□□□ -2.04
CSMD3-205ENST00000462254 KRTAP5-4Q6L8H1 288 aa2.32□□□□□ -2.04
CSMD3-205ENST00000462254 LOC101927531A0A1B0GV80 90 aa2.31□□□□□ -2.04
CSMD3-205ENST00000462254 MIR22HGQ0VDD5 57 aa2.31□□□□□ -2.04
CSMD3-205ENST00000462254 KRTAP19-2Q3LHN2 52 aa2.28□□□□□ -2.04
CSMD3-205ENST00000462254 CHKB-CPT1BH3BT56 60 aa2.27□□□□□ -2.05
CSMD3-205ENST00000462254 LCE3AQ5TA76 89 aa2.27□□□□□ -2.05
CSMD3-205ENST00000462254 UBR4Q5T4S7 5183 aa2.25□□□□□ -2.05
CSMD3-205ENST00000462254 COX6B2Q6YFQ2 88 aa2.25□□□□□ -2.05
CSMD3-205ENST00000462254 CDC42SE1Q9NRR8 79 aa2.25□□□□□ -2.05
CSMD3-205ENST00000462254 RNF213Q63HN8 5207 aa2.24□□□□□ -2.05
CSMD3-205ENST00000462254 SPTSSBQ8NFR3 76 aa2.23□□□□□ -2.05
CSMD3-205ENST00000462254 DMAC1Q96GE9 116 aa2.23□□□□□ -2.05
CSMD3-205ENST00000462254 PRR15LQ9BU68 103 aa2.23□□□□□ -2.05
CSMD3-205ENST00000462254 Q5VV11 94 aa2.22□□□□□ -2.05
CSMD3-205ENST00000462254 MUC2Q02817 5179 aa2.21□□□□□ -2.05
CSMD3-205ENST00000462254 KRTAP5-9P26371 169 aa2.21□□□□□ -2.06
CSMD3-205ENST00000462254 H1FX-AS1Q4G0G2 97 aa2.21□□□□□ -2.06
CSMD3-205ENST00000462254 LINC01558Q9Y6Z2 57 aa2.21□□□□□ -2.06
CSMD3-205ENST00000462254 FLGP20930 4061 aaPredicted RBP2.21□□□□□ -2.06
CSMD3-205ENST00000462254 SPRR5A0A1B0GTR4 108 aa2.2□□□□□ -2.06
CSMD3-205ENST00000462254 MT1HP80294 61 aa2.2□□□□□ -2.06
CSMD3-205ENST00000462254 COA5Q86WW8 74 aa2.19□□□□□ -2.06
CSMD3-205ENST00000462254 FAT4Q6V0I7 4981 aa2.19□□□□□ -2.06
CSMD3-205ENST00000462254 ACYP2P14621 99 aa2.18□□□□□ -2.06
CSMD3-205ENST00000462254 S4R3F8 94 aa2.18□□□□□ -2.06
CSMD3-205ENST00000462254 OBSCNQ5VST9 7968 aa2.16□□□□□ -2.06
CSMD3-205ENST00000462254 CSAG1Q6PB30 78 aa2.15□□□□□ -2.07
CSMD3-205ENST00000462254 M0R2T5 61 aa2.13□□□□□ -2.07
CSMD3-205ENST00000462254 UQCR11O14957 56 aa2.13□□□□□ -2.07
CSMD3-205ENST00000462254 KRTAP4-3Q9BYR4 195 aa2.13□□□□□ -2.07
CSMD3-205ENST00000462254 A0A1B0GU69 56 aa2.12□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms