RNA–Protein interactions for RNA: ENST00000461409.1

HDAC9-220, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 728 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-220ENST00000461409 Q8N9L7 120 aa4.01□□□□□ -1.77
HDAC9-220ENST00000461409 FAM236AA0A1B0GUQ0 79 aa3.99□□□□□ -1.77
HDAC9-220ENST00000461409 FAM236BA0A1B0GV22 79 aa3.99□□□□□ -1.77
HDAC9-220ENST00000461409 C5orf47Q569G3 176 aa3.99□□□□□ -1.77
HDAC9-220ENST00000461409 TAX1BP3O14907 124 aa3.98□□□□□ -1.77
HDAC9-220ENST00000461409 UBL5Q9BZL1 73 aa3.97□□□□□ -1.77
HDAC9-220ENST00000461409 CSAG1Q6PB30 78 aa3.96□□□□□ -1.78
HDAC9-220ENST00000461409 SPCS1Q9Y6A9 102 aa3.96□□□□□ -1.78
HDAC9-220ENST00000461409 S4R3F8 94 aa3.96□□□□□ -1.78
HDAC9-220ENST00000461409 KRTAP5-4Q6L8H1 288 aa3.95□□□□□ -1.78
HDAC9-220ENST00000461409 A6NN06 94 aa3.94□□□□□ -1.78
HDAC9-220ENST00000461409 KRTAP10-5P60370 271 aa3.94□□□□□ -1.78
HDAC9-220ENST00000461409 Q5VV11 94 aa3.94□□□□□ -1.78
HDAC9-220ENST00000461409 C1orf64Q8NEQ6 169 aa3.94□□□□□ -1.78
HDAC9-220ENST00000461409 LCA10Q71F78 164 aa3.92□□□□□ -1.78
HDAC9-220ENST00000461409 SPRR2GQ9BYE4 73 aa3.92□□□□□ -1.78
HDAC9-220ENST00000461409 KRTAP4-4Q9BYR3 166 aa3.92□□□□□ -1.78
HDAC9-220ENST00000461409 TP53AIP1Q9HCN2 124 aa3.92□□□□□ -1.78
HDAC9-220ENST00000461409 KRTAP5-9P26371 169 aa3.91□□□□□ -1.78
HDAC9-220ENST00000461409 MT1BP07438 61 aa3.9□□□□□ -1.79
HDAC9-220ENST00000461409 KRTAP19-8Q3LI54 63 aa3.9□□□□□ -1.79
HDAC9-220ENST00000461409 LCE1FQ5T754 118 aa3.9□□□□□ -1.79
HDAC9-220ENST00000461409 KLKP1Q107X0 134 aa3.88□□□□□ -1.79
HDAC9-220ENST00000461409 COL5A1-AS1Q5SY13 56 aa3.88□□□□□ -1.79
HDAC9-220ENST00000461409 PRO0461Q9UI25 63 aa3.88□□□□□ -1.79
HDAC9-220ENST00000461409 K7EP34 96 aa3.86□□□□□ -1.79
HDAC9-220ENST00000461409 LOC105371267A0A1B0GV96 52 aa3.85□□□□□ -1.79
HDAC9-220ENST00000461409 KRTAP10-12P60413 245 aa3.85□□□□□ -1.79
HDAC9-220ENST00000461409 CRIPTQ9P021 101 aa3.85□□□□□ -1.79
HDAC9-220ENST00000461409 CYP4F30PQ9H0H9 118 aa3.84□□□□□ -1.79
HDAC9-220ENST00000461409 MUC12Q9UKN1 5478 aa3.83□□□□□ -1.8
HDAC9-220ENST00000461409 NEBP20929 6669 aa3.83□□□□□ -1.8
HDAC9-220ENST00000461409 TRAV22A0A0B4J277 110 aa3.82□□□□□ -1.8
HDAC9-220ENST00000461409 LOC101927531A0A1B0GV80 90 aa3.82□□□□□ -1.8
HDAC9-220ENST00000461409 GTF2H5Q6ZYL4 71 aa3.82□□□□□ -1.8
HDAC9-220ENST00000461409 IMUPQ9GZP8 106 aa3.81□□□□□ -1.8
HDAC9-220ENST00000461409 F8W1H4 67 aa3.8□□□□□ -1.8
HDAC9-220ENST00000461409 KRTAP9-6A8MVA2 160 aa3.79□□□□□ -1.8
HDAC9-220ENST00000461409 NDUFC1O43677 76 aa3.78□□□□□ -1.8
HDAC9-220ENST00000461409 ETDBQ3ZM63 59 aa3.78□□□□□ -1.8
HDAC9-220ENST00000461409 MDN1Q9NU22 5596 aa3.78□□□□□ -1.8
HDAC9-220ENST00000461409 KMT2DO14686 5537 aa3.77□□□□□ -1.81
HDAC9-220ENST00000461409 H0YAA0 97 aa3.77□□□□□ -1.81
HDAC9-220ENST00000461409 KRTAP20-1Q3LI63 56 aa3.77□□□□□ -1.81
HDAC9-220ENST00000461409 A0A087WVE0 104 aa3.76□□□□□ -1.81
HDAC9-220ENST00000461409 ATOX1O00244 68 aa3.76□□□□□ -1.81
HDAC9-220ENST00000461409 UQCRQO14949 82 aa3.75□□□□□ -1.81
HDAC9-220ENST00000461409 ATP5EP2Q5VTU8 51 aa3.75□□□□□ -1.81
HDAC9-220ENST00000461409 ACYP1P07311 99 aa3.74□□□□□ -1.81
HDAC9-220ENST00000461409 A8MUN3 132 aa3.73□□□□□ -1.81
HDAC9-220ENST00000461409 H0Y9P7 68 aa3.73□□□□□ -1.81
HDAC9-220ENST00000461409 FAM240AA0A1B0GVK7 77 aa3.72□□□□□ -1.81
HDAC9-220ENST00000461409 HIST1H4AP62805 103 aaKnown RBP3.72□□□□□ -1.81
HDAC9-220ENST00000461409 PRO2289Q9P1D8 64 aa3.72□□□□□ -1.81
HDAC9-220ENST00000461409 ADM2Q7Z4H4 148 aa3.71□□□□□ -1.82
HDAC9-220ENST00000461409 PLAC4Q8WY50 150 aa3.67□□□□□ -1.82
HDAC9-220ENST00000461409 LINC00208Q96KT6 92 aa3.66□□□□□ -1.82
HDAC9-220ENST00000461409 PCP4L1A6NKN8 68 aa3.65□□□□□ -1.83
HDAC9-220ENST00000461409 KRTAP2-3P0C7H8 128 aa3.65□□□□□ -1.83
HDAC9-220ENST00000461409 MP68P56378 58 aa3.65□□□□□ -1.83
HDAC9-220ENST00000461409 LCE3CQ5T5A8 94 aa3.65□□□□□ -1.83
HDAC9-220ENST00000461409 C20orf197Q8N268 126 aa3.65□□□□□ -1.83
HDAC9-220ENST00000461409 SPRR2FQ96RM1 72 aa3.65□□□□□ -1.83
HDAC9-220ENST00000461409 KRTAP2-4Q9BYR9 128 aa3.65□□□□□ -1.83
HDAC9-220ENST00000461409 MT1XP80297 61 aa3.64□□□□□ -1.83
HDAC9-220ENST00000461409 LINC00643Q86TS7 51 aa3.64□□□□□ -1.83
HDAC9-220ENST00000461409 R4GN34 69 aa3.64□□□□□ -1.83
HDAC9-220ENST00000461409 SPRR2EP22531 72 aa3.62□□□□□ -1.83
HDAC9-220ENST00000461409 SPRR2BP35325 72 aa3.62□□□□□ -1.83
HDAC9-220ENST00000461409 SPRR2AP35326 72 aa3.62□□□□□ -1.83
HDAC9-220ENST00000461409 KRTAP8-1Q8IUC2 63 aa3.62□□□□□ -1.83
HDAC9-220ENST00000461409 OBSCNQ5VST9 7968 aa3.6□□□□□ -1.83
HDAC9-220ENST00000461409 KRTAP12-2P59991 146 aa3.6□□□□□ -1.83
HDAC9-220ENST00000461409 OCR1Q9BZK8 76 aa3.6□□□□□ -1.83
HDAC9-220ENST00000461409 M0QZ58 72 aa3.59□□□□□ -1.83
HDAC9-220ENST00000461409 P0C880 135 aa3.59□□□□□ -1.83
HDAC9-220ENST00000461409 H3BPC8 53 aa3.58□□□□□ -1.84
HDAC9-220ENST00000461409 DMAC1Q96GE9 116 aa3.57□□□□□ -1.84
HDAC9-220ENST00000461409 LINC01554Q52M75 96 aa3.55□□□□□ -1.84
HDAC9-220ENST00000461409 KRTAP2-1Q9BYU5 128 aa3.53□□□□□ -1.84
HDAC9-220ENST00000461409 SCGB1A1P11684 91 aa3.52□□□□□ -1.85
HDAC9-220ENST00000461409 SPRR2DP22532 72 aa3.51□□□□□ -1.85
HDAC9-220ENST00000461409 TRAV7A0A075B6U4 112 aa3.5□□□□□ -1.85
HDAC9-220ENST00000461409 J3QR89 54 aa3.48□□□□□ -1.85
HDAC9-220ENST00000461409 SPTSSBQ8NFR3 76 aa3.48□□□□□ -1.85
HDAC9-220ENST00000461409 NDUFAF8A1L188 74 aa3.47□□□□□ -1.85
HDAC9-220ENST00000461409 MT-ATP8P03928 68 aa3.47□□□□□ -1.85
HDAC9-220ENST00000461409 ACYP2P14621 99 aa3.47□□□□□ -1.85
HDAC9-220ENST00000461409 KRTAP4-3Q9BYR4 195 aa3.47□□□□□ -1.85
HDAC9-220ENST00000461409 A0A1B0GV90 55 aa3.43□□□□□ -1.86
HDAC9-220ENST00000461409 CHKB-CPT1BH3BT56 60 aa3.42□□□□□ -1.86
HDAC9-220ENST00000461409 PRAC1Q96KF2 57 aa3.42□□□□□ -1.86
HDAC9-220ENST00000461409 SMIM20Q8N5G0 67 aa3.4□□□□□ -1.87
HDAC9-220ENST00000461409 CAMK2N1Q7Z7J9 78 aa3.34□□□□□ -1.87
HDAC9-220ENST00000461409 LCE3EQ5T5B0 92 aa3.33□□□□□ -1.88
HDAC9-220ENST00000461409 SPANXA2-OT1Q8N9U9 137 aa3.31□□□□□ -1.88
HDAC9-220ENST00000461409 SNURFQ9Y675 71 aa3.3□□□□□ -1.88
HDAC9-220ENST00000461409 KRTAP13-4Q3LI77 160 aa3.29□□□□□ -1.88
HDAC9-220ENST00000461409 K7ERU9 68 aa3.28□□□□□ -1.88
HDAC9-220ENST00000461409 KRTAP5-2Q701N4 177 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms