RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 A0A087WVE0 104 aa10.01□□□□□ -0.81
PTPN4-207ENST00000460162 IMUPQ9GZP8 106 aa9.96□□□□□ -0.82
PTPN4-207ENST00000460162 ACYP1P07311 99 aa9.95□□□□□ -0.82
PTPN4-207ENST00000460162 ATP5EP2Q5VTU8 51 aa9.95□□□□□ -0.82
PTPN4-207ENST00000460162 ATOX1O00244 68 aa9.91□□□□□ -0.82
PTPN4-207ENST00000460162 UQCRQO14949 82 aa9.91□□□□□ -0.82
PTPN4-207ENST00000460162 FAM240AA0A1B0GVK7 77 aa9.9□□□□□ -0.82
PTPN4-207ENST00000460162 H0YAA0 97 aa9.9□□□□□ -0.82
PTPN4-207ENST00000460162 NDUFC1O43677 76 aa9.89□□□□□ -0.83
PTPN4-207ENST00000460162 H0Y9P7 68 aa9.88□□□□□ -0.83
PTPN4-207ENST00000460162 KRTAP5-9P26371 169 aa9.88□□□□□ -0.83
PTPN4-207ENST00000460162 HIST1H4AP62805 103 aaKnown RBP9.87□□□□□ -0.83
PTPN4-207ENST00000460162 PCP4L1A6NKN8 68 aa9.85□□□□□ -0.83
PTPN4-207ENST00000460162 A8MUN3 132 aa9.82□□□□□ -0.84
PTPN4-207ENST00000460162 KMT2DO14686 5537 aa9.79□□□□□ -0.84
PTPN4-207ENST00000460162 KRTAP20-1Q3LI63 56 aa9.75□□□□□ -0.85
PTPN4-207ENST00000460162 MDN1Q9NU22 5596 aa9.74□□□□□ -0.85
PTPN4-207ENST00000460162 ADM2Q7Z4H4 148 aa9.73□□□□□ -0.85
PTPN4-207ENST00000460162 LINC00208Q96KT6 92 aa9.69□□□□□ -0.86
PTPN4-207ENST00000460162 LINC00643Q86TS7 51 aa9.68□□□□□ -0.86
PTPN4-207ENST00000460162 PRO2289Q9P1D8 64 aa9.66□□□□□ -0.86
PTPN4-207ENST00000460162 MP68P56378 58 aa9.63□□□□□ -0.87
PTPN4-207ENST00000460162 OCR1Q9BZK8 76 aa9.61□□□□□ -0.87
PTPN4-207ENST00000460162 MT1XP80297 61 aa9.58□□□□□ -0.88
PTPN4-207ENST00000460162 PLAC4Q8WY50 150 aa9.55□□□□□ -0.88
PTPN4-207ENST00000460162 C20orf197Q8N268 126 aa9.53□□□□□ -0.88
PTPN4-207ENST00000460162 R4GN34 69 aa9.53□□□□□ -0.88
PTPN4-207ENST00000460162 SPRR2FQ96RM1 72 aa9.51□□□□□ -0.89
PTPN4-207ENST00000460162 H3BPC8 53 aa9.48□□□□□ -0.89
PTPN4-207ENST00000460162 P0C880 135 aa9.48□□□□□ -0.89
PTPN4-207ENST00000460162 DMAC1Q96GE9 116 aa9.46□□□□□ -0.9
PTPN4-207ENST00000460162 M0QZ58 72 aa9.44□□□□□ -0.9
PTPN4-207ENST00000460162 KRTAP12-2P59991 146 aa9.43□□□□□ -0.9
PTPN4-207ENST00000460162 KRTAP2-3P0C7H8 128 aa9.42□□□□□ -0.9
PTPN4-207ENST00000460162 SPRR2EP22531 72 aa9.42□□□□□ -0.9
PTPN4-207ENST00000460162 SPRR2BP35325 72 aa9.42□□□□□ -0.9
PTPN4-207ENST00000460162 SPRR2AP35326 72 aa9.42□□□□□ -0.9
PTPN4-207ENST00000460162 KRTAP2-4Q9BYR9 128 aa9.42□□□□□ -0.9
PTPN4-207ENST00000460162 KRTAP8-1Q8IUC2 63 aa9.41□□□□□ -0.9
PTPN4-207ENST00000460162 KRTAP3-2Q9BYR7 98 aa9.35□□□□□ -0.91
PTPN4-207ENST00000460162 A0A1B0GV90 55 aa9.3□□□□□ -0.92
PTPN4-207ENST00000460162 SCGB1A1P11684 91 aa9.3□□□□□ -0.92
PTPN4-207ENST00000460162 LINC01554Q52M75 96 aa9.29□□□□□ -0.92
PTPN4-207ENST00000460162 J3QR89 54 aa9.28□□□□□ -0.92
PTPN4-207ENST00000460162 LCE1AQ5T7P2 110 aa9.27□□□□□ -0.93
PTPN4-207ENST00000460162 TRAV7A0A075B6U4 112 aa9.26□□□□□ -0.93
PTPN4-207ENST00000460162 KRTAP4-8A0A0G2JLE6 195 aa9.2□□□□□ -0.94
PTPN4-207ENST00000460162 KRTAP4-8Q9BYQ9 185 aa9.2□□□□□ -0.94
PTPN4-207ENST00000460162 ACYP2P14621 99 aa9.15□□□□□ -0.94
PTPN4-207ENST00000460162 KRTAP10-7P60409 375 aaPredicted RBP9.12□□□□□ -0.95
PTPN4-207ENST00000460162 SPTSSBQ8NFR3 76 aa9.12□□□□□ -0.95
PTPN4-207ENST00000460162 KRTAP2-2Q9BYT5 123 aa9.12□□□□□ -0.95
PTPN4-207ENST00000460162 KRTAP2-1Q9BYU5 128 aa9.12□□□□□ -0.95
PTPN4-207ENST00000460162 SPRR2DP22532 72 aa9.11□□□□□ -0.95
PTPN4-207ENST00000460162 KRTAP10-12P60413 245 aa9.11□□□□□ -0.95
PTPN4-207ENST00000460162 MT-ATP8P03928 68 aa9.09□□□□□ -0.95
PTPN4-207ENST00000460162 SMIM20Q8N5G0 67 aa9.03□□□□□ -0.96
PTPN4-207ENST00000460162 CHKB-CPT1BH3BT56 60 aa9□□□□□ -0.97
PTPN4-207ENST00000460162 LCE3BQ5TA77 95 aa8.88□□□□□ -0.99
PTPN4-207ENST00000460162 SNURFQ9Y675 71 aa8.83□□□□□ -1
PTPN4-207ENST00000460162 SPANXA2-OT1Q8N9U9 137 aa8.81□□□□□ -1
PTPN4-207ENST00000460162 K7ERU9 68 aa8.8□□□□□ -1
PTPN4-207ENST00000460162 KRTAP13-4Q3LI77 160 aa8.76□□□□□ -1.01
PTPN4-207ENST00000460162 CAMK2N1Q7Z7J9 78 aa8.72□□□□□ -1.01
PTPN4-207ENST00000460162 SERP2Q8N6R1 65 aa8.62□□□□□ -1.03
PTPN4-207ENST00000460162 KRTAP19-7Q3SYF9 63 aa8.57□□□□□ -1.04
PTPN4-207ENST00000460162 COA5Q86WW8 74 aa8.55□□□□□ -1.04
PTPN4-207ENST00000460162 LCE5AQ5TCM9 118 aa8.54□□□□□ -1.04
PTPN4-207ENST00000460162 DSTQ03001 7570 aaKnown RBP8.51□□□□□ -1.05
PTPN4-207ENST00000460162 MT1EP04732 61 aa8.51□□□□□ -1.05
PTPN4-207ENST00000460162 SEC61GP60059 68 aa8.5□□□□□ -1.05
PTPN4-207ENST00000460162 KRTAP19-3Q7Z4W3 81 aa8.49□□□□□ -1.05
PTPN4-207ENST00000460162 SERP1Q9Y6X1 66 aa8.47□□□□□ -1.05
PTPN4-207ENST00000460162 A0A0D9SG42 100 aa8.46□□□□□ -1.06
PTPN4-207ENST00000460162 SPATA8Q6RVD6 105 aa8.4□□□□□ -1.06
PTPN4-207ENST00000460162 SPINT4Q6UDR6 99 aa8.37□□□□□ -1.07
PTPN4-207ENST00000460162 A0A1B0GU33 70 aa8.35□□□□□ -1.07
PTPN4-207ENST00000460162 GPR98Q8WXG9 6306 aa8.34□□□□□ -1.07
PTPN4-207ENST00000460162 KRTAP12-1P59990 96 aa8.31□□□□□ -1.08
PTPN4-207ENST00000460162 CYSTM1Q9H1C7 97 aa8.3□□□□□ -1.08
PTPN4-207ENST00000460162 COX7CP15954 63 aa8.28□□□□□ -1.08
PTPN4-207ENST00000460162 KRTAP19-5Q3LI72 72 aa8.28□□□□□ -1.08
PTPN4-207ENST00000460162 KRTAP4-9Q9BYQ8 210 aa8.27□□□□□ -1.09
PTPN4-207ENST00000460162 MT1GP13640 62 aa8.26□□□□□ -1.09
PTPN4-207ENST00000460162 PP632Q6XCG6 107 aa8.23□□□□□ -1.09
PTPN4-207ENST00000460162 H7BZZ5 65 aa8.22□□□□□ -1.09
PTPN4-207ENST00000460162 SMIM26A0A096LP01 95 aa8.15□□□□□ -1.1
PTPN4-207ENST00000460162 A0A1B0GU69 56 aa8.13□□□□□ -1.11
PTPN4-207ENST00000460162 MT1MQ8N339 61 aa8.12□□□□□ -1.11
PTPN4-207ENST00000460162 LCE1DQ5T752 114 aa8.1□□□□□ -1.11
PTPN4-207ENST00000460162 MT1LQ93083 61 aa8.09□□□□□ -1.11
PTPN4-207ENST00000460162 LCE4AQ5TA78 99 aa8.06□□□□□ -1.12
PTPN4-207ENST00000460162 A8MU10 97 aa8.04□□□□□ -1.12
PTPN4-207ENST00000460162 HMCN1Q96RW7 5635 aa8.02□□□□□ -1.12
PTPN4-207ENST00000460162 TNP1P09430 55 aa8□□□□□ -1.13
PTPN4-207ENST00000460162 LCE3AQ5TA76 89 aa8□□□□□ -1.13
PTPN4-207ENST00000460162 C10orf95Q9H7T3 257 aa8□□□□□ -1.13
PTPN4-207ENST00000460162 MT4P47944 62 aa7.96□□□□□ -1.14
PTPN4-207ENST00000460162 KRTAP5-4Q6L8H1 288 aa7.88□□□□□ -1.15
PTPN4-207ENST00000460162 KRTAP4-3Q9BYR4 195 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms