RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 LOC101927531A0A1B0GV80 90 aa5.71□□□□□ -1.5
HMGB3-204ENST00000448905 H0YAA0 97 aa5.69□□□□□ -1.5
HMGB3-204ENST00000448905 A0A087WVE0 104 aa5.68□□□□□ -1.5
HMGB3-204ENST00000448905 TRAV22A0A0B4J277 110 aa5.67□□□□□ -1.5
HMGB3-204ENST00000448905 SPRR2FQ96RM1 72 aa5.67□□□□□ -1.5
HMGB3-204ENST00000448905 A8MUN3 132 aa5.65□□□□□ -1.5
HMGB3-204ENST00000448905 SPRR2EP22531 72 aa5.65□□□□□ -1.5
HMGB3-204ENST00000448905 SPRR2BP35325 72 aa5.65□□□□□ -1.5
HMGB3-204ENST00000448905 SPRR2AP35326 72 aa5.65□□□□□ -1.5
HMGB3-204ENST00000448905 PLAC4Q8WY50 150 aa5.65□□□□□ -1.5
HMGB3-204ENST00000448905 PRO0461Q9UI25 63 aa5.65□□□□□ -1.5
HMGB3-204ENST00000448905 ACYP1P07311 99 aa5.64□□□□□ -1.51
HMGB3-204ENST00000448905 COL5A1-AS1Q5SY13 56 aa5.64□□□□□ -1.51
HMGB3-204ENST00000448905 K7EP34 96 aa5.62□□□□□ -1.51
HMGB3-204ENST00000448905 ADM2Q7Z4H4 148 aa5.62□□□□□ -1.51
HMGB3-204ENST00000448905 ATOX1O00244 68 aa5.61□□□□□ -1.51
HMGB3-204ENST00000448905 F8W1H4 67 aa5.59□□□□□ -1.51
HMGB3-204ENST00000448905 UQCRQO14949 82 aa5.59□□□□□ -1.51
HMGB3-204ENST00000448905 GTF2H5Q6ZYL4 71 aa5.59□□□□□ -1.51
HMGB3-204ENST00000448905 KRTAP8-1Q8IUC2 63 aa5.59□□□□□ -1.51
HMGB3-204ENST00000448905 KRTAP2-2Q9BYT5 123 aa5.56□□□□□ -1.52
HMGB3-204ENST00000448905 KRTAP2-1Q9BYU5 128 aa5.56□□□□□ -1.52
HMGB3-204ENST00000448905 H0Y9P7 68 aa5.55□□□□□ -1.52
HMGB3-204ENST00000448905 MT1XP80297 61 aa5.55□□□□□ -1.52
HMGB3-204ENST00000448905 ETDBQ3ZM63 59 aa5.54□□□□□ -1.52
HMGB3-204ENST00000448905 R4GN34 69 aa5.54□□□□□ -1.52
HMGB3-204ENST00000448905 C20orf197Q8N268 126 aa5.53□□□□□ -1.52
HMGB3-204ENST00000448905 HIST1H4AP62805 103 aaKnown RBP5.52□□□□□ -1.53
HMGB3-204ENST00000448905 KRTAP12-2P59991 146 aa5.51□□□□□ -1.53
HMGB3-204ENST00000448905 LCE1AQ5T7P2 110 aa5.51□□□□□ -1.53
HMGB3-204ENST00000448905 LOC105371267A0A1B0GV96 52 aa5.5□□□□□ -1.53
HMGB3-204ENST00000448905 ATP5EP2Q5VTU8 51 aa5.49□□□□□ -1.53
HMGB3-204ENST00000448905 SPRR2DP22532 72 aa5.47□□□□□ -1.53
HMGB3-204ENST00000448905 LINC00208Q96KT6 92 aa5.46□□□□□ -1.54
HMGB3-204ENST00000448905 M0QZ58 72 aa5.45□□□□□ -1.54
HMGB3-204ENST00000448905 MP68P56378 58 aa5.43□□□□□ -1.54
HMGB3-204ENST00000448905 P0C880 135 aa5.41□□□□□ -1.54
HMGB3-204ENST00000448905 KRTAP4-8A0A0G2JLE6 195 aa5.4□□□□□ -1.54
HMGB3-204ENST00000448905 FAM240AA0A1B0GVK7 77 aa5.4□□□□□ -1.54
HMGB3-204ENST00000448905 LINC01554Q52M75 96 aa5.4□□□□□ -1.54
HMGB3-204ENST00000448905 KRTAP4-8Q9BYQ9 185 aa5.4□□□□□ -1.54
HMGB3-204ENST00000448905 LOC100996750A0A140TA64 210 aa5.35□□□□□ -1.55
HMGB3-204ENST00000448905 KRTAP4-6Q9BYQ5 205 aa5.35□□□□□ -1.55
HMGB3-204ENST00000448905 LINC00643Q86TS7 51 aa5.34□□□□□ -1.55
HMGB3-204ENST00000448905 LCE3BQ5TA77 95 aa5.33□□□□□ -1.56
HMGB3-204ENST00000448905 H3BPC8 53 aa5.31□□□□□ -1.56
HMGB3-204ENST00000448905 OCR1Q9BZK8 76 aa5.3□□□□□ -1.56
HMGB3-204ENST00000448905 MT-ATP8P03928 68 aa5.29□□□□□ -1.56
HMGB3-204ENST00000448905 KRTAP10-7P60409 375 aaPredicted RBP5.29□□□□□ -1.56
HMGB3-204ENST00000448905 KRTAP10-12P60413 245 aa5.29□□□□□ -1.56
HMGB3-204ENST00000448905 DMAC1Q96GE9 116 aa5.28□□□□□ -1.56
HMGB3-204ENST00000448905 PCP4L1A6NKN8 68 aa5.25□□□□□ -1.57
HMGB3-204ENST00000448905 TRAV7A0A075B6U4 112 aa5.23□□□□□ -1.57
HMGB3-204ENST00000448905 SPTSSBQ8NFR3 76 aa5.23□□□□□ -1.57
HMGB3-204ENST00000448905 SCGB1A1P11684 91 aa5.22□□□□□ -1.57
HMGB3-204ENST00000448905 ACYP2P14621 99 aa5.2□□□□□ -1.58
HMGB3-204ENST00000448905 GPR98Q8WXG9 6306 aa5.14□□□□□ -1.59
HMGB3-204ENST00000448905 DSTQ03001 7570 aaKnown RBP5.12□□□□□ -1.59
HMGB3-204ENST00000448905 CHKB-CPT1BH3BT56 60 aa5.11□□□□□ -1.59
HMGB3-204ENST00000448905 KRTAP4-9Q9BYQ8 210 aa5.11□□□□□ -1.59
HMGB3-204ENST00000448905 CAMK2N1Q7Z7J9 78 aa5.08□□□□□ -1.6
HMGB3-204ENST00000448905 J3QR89 54 aa5.07□□□□□ -1.6
HMGB3-204ENST00000448905 LCE5AQ5TCM9 118 aa5.01□□□□□ -1.61
HMGB3-204ENST00000448905 SMIM20Q8N5G0 67 aa5□□□□□ -1.61
HMGB3-204ENST00000448905 KRTAP19-3Q7Z4W3 81 aa4.98□□□□□ -1.61
HMGB3-204ENST00000448905 KRTAP19-7Q3SYF9 63 aa4.96□□□□□ -1.62
HMGB3-204ENST00000448905 MT1EP04732 61 aa4.94□□□□□ -1.62
HMGB3-204ENST00000448905 KRTAP13-4Q3LI77 160 aa4.91□□□□□ -1.62
HMGB3-204ENST00000448905 A0A1B0GV90 55 aa4.9□□□□□ -1.63
HMGB3-204ENST00000448905 SVIPQ8NHG7 77 aa4.9□□□□□ -1.63
HMGB3-204ENST00000448905 CYSTM1Q9H1C7 97 aa4.9□□□□□ -1.63
HMGB3-204ENST00000448905 LCE1DQ5T752 114 aa4.89□□□□□ -1.63
HMGB3-204ENST00000448905 MT1GP13640 62 aa4.88□□□□□ -1.63
HMGB3-204ENST00000448905 PP632Q6XCG6 107 aa4.88□□□□□ -1.63
HMGB3-204ENST00000448905 A0A0D9SG42 100 aa4.87□□□□□ -1.63
HMGB3-204ENST00000448905 SEC61GP60059 68 aa4.87□□□□□ -1.63
HMGB3-204ENST00000448905 SPANXA2-OT1Q8N9U9 137 aa4.86□□□□□ -1.63
HMGB3-204ENST00000448905 SNURFQ9Y675 71 aa4.85□□□□□ -1.63
HMGB3-204ENST00000448905 SERP1Q9Y6X1 66 aa4.84□□□□□ -1.63
HMGB3-204ENST00000448905 LCE4AQ5TA78 99 aa4.83□□□□□ -1.64
HMGB3-204ENST00000448905 MT4P47944 62 aa4.82□□□□□ -1.64
HMGB3-204ENST00000448905 SPINT4Q6UDR6 99 aa4.81□□□□□ -1.64
HMGB3-204ENST00000448905 KRTAP19-5Q3LI72 72 aa4.8□□□□□ -1.64
HMGB3-204ENST00000448905 HMCN1Q96RW7 5635 aa4.78□□□□□ -1.64
HMGB3-204ENST00000448905 A0A1B0GU33 70 aa4.74□□□□□ -1.65
HMGB3-204ENST00000448905 SPATA8Q6RVD6 105 aa4.74□□□□□ -1.65
HMGB3-204ENST00000448905 K7ERU9 68 aa4.72□□□□□ -1.65
HMGB3-204ENST00000448905 COA5Q86WW8 74 aa4.72□□□□□ -1.65
HMGB3-204ENST00000448905 MT1MQ8N339 61 aa4.72□□□□□ -1.65
HMGB3-204ENST00000448905 AHNAK2Q8IVF2 5795 aa4.72□□□□□ -1.65
HMGB3-204ENST00000448905 KRTAP4-12Q9BQ66 201 aa4.71□□□□□ -1.66
HMGB3-204ENST00000448905 KRTAP5-10Q6L8G5 202 aa4.69□□□□□ -1.66
HMGB3-204ENST00000448905 SERP2Q8N6R1 65 aa4.68□□□□□ -1.66
HMGB3-204ENST00000448905 MT1LQ93083 61 aa4.68□□□□□ -1.66
HMGB3-204ENST00000448905 KRTAP12-1P59990 96 aa4.67□□□□□ -1.66
HMGB3-204ENST00000448905 KRTAP5-4Q6L8H1 288 aa4.64□□□□□ -1.67
HMGB3-204ENST00000448905 KRTAP4-3Q9BYR4 195 aa4.64□□□□□ -1.67
HMGB3-204ENST00000448905 SMIM26A0A096LP01 95 aa4.63□□□□□ -1.67
HMGB3-204ENST00000448905 TNP1P09430 55 aa4.61□□□□□ -1.67
HMGB3-204ENST00000448905 KRTAP9-9Q9BYP9 154 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms