RNA–Protein interactions for RNA: ENST00000448223.6

SMC6-207, Transcript of structural maintenance of chromosomes 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC6, Length 5,233 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC6-207ENST00000448223 LRP1BQ9NZR2 4599 aa4.7□□□□□ -1.66
SMC6-207ENST00000448223 DNAH2Q9P225 4427 aa4.69□□□□□ -1.66
SMC6-207ENST00000448223 INE1O15225 51 aa4.68□□□□□ -1.66
SMC6-207ENST00000448223 ALMS1Q8TCU4 4167 aa4.68□□□□□ -1.66
SMC6-207ENST00000448223 KRTAP12-2P59991 146 aa4.68□□□□□ -1.66
SMC6-207ENST00000448223 DNAH6Q9C0G6 4158 aa4.67□□□□□ -1.66
SMC6-207ENST00000448223 KRTAP15-1Q3LI76 137 aa4.67□□□□□ -1.66
SMC6-207ENST00000448223 FAT1Q14517 4588 aa4.65□□□□□ -1.66
SMC6-207ENST00000448223 KRTAP3-1Q9BYR8 98 aa4.64□□□□□ -1.67
SMC6-207ENST00000448223 PRO2289Q9P1D8 64 aa4.64□□□□□ -1.67
SMC6-207ENST00000448223 KRTAP13-4Q3LI77 160 aa4.61□□□□□ -1.67
SMC6-207ENST00000448223 DNAH5Q8TE73 4624 aa4.6□□□□□ -1.67
SMC6-207ENST00000448223 KRTAP12-1P59990 96 aa4.59□□□□□ -1.68
SMC6-207ENST00000448223 MYCBP2O75592 4640 aa4.59□□□□□ -1.68
SMC6-207ENST00000448223 XP32Q5T750 250 aa4.57□□□□□ -1.68
SMC6-207ENST00000448223 VPS13BQ7Z7G8 4022 aa4.56□□□□□ -1.68
SMC6-207ENST00000448223 HYDINQ4G0P3 5121 aa4.51□□□□□ -1.69
SMC6-207ENST00000448223 A0A1B0GVY2 172 aa4.49□□□□□ -1.69
SMC6-207ENST00000448223 PKHD1P08F94 4074 aa4.49□□□□□ -1.69
SMC6-207ENST00000448223 DYNC1H1Q14204 4646 aaKnown RBP4.46□□□□□ -1.7
SMC6-207ENST00000448223 LRP1Q07954 4544 aaKnown RBP4.43□□□□□ -1.7
SMC6-207ENST00000448223 FAT3Q8TDW7 4589 aa4.43□□□□□ -1.7
SMC6-207ENST00000448223 KRTAP10-6P60371 365 aaPredicted RBP4.42□□□□□ -1.7
SMC6-207ENST00000448223 PKD1P98161 4303 aa4.41□□□□□ -1.7
SMC6-207ENST00000448223 KRTAP10-4P60372 401 aaPredicted RBP4.4□□□□□ -1.7
SMC6-207ENST00000448223 FAT2Q9NYQ8 4349 aa4.4□□□□□ -1.71
SMC6-207ENST00000448223 KRTAP3-3Q9BYR6 98 aa4.39□□□□□ -1.71
SMC6-207ENST00000448223 SACSQ9NZJ4 4579 aa4.38□□□□□ -1.71
SMC6-207ENST00000448223 KRTAP10-10P60014 251 aa4.38□□□□□ -1.71
SMC6-207ENST00000448223 KRTAP3-2Q9BYR7 98 aa4.35□□□□□ -1.71
SMC6-207ENST00000448223 KIAA1109Q2LD37 5005 aa4.33□□□□□ -1.72
SMC6-207ENST00000448223 APOBP04114 4563 aaKnown RBP4.33□□□□□ -1.72
SMC6-207ENST00000448223 RYR1P21817 5038 aa4.31□□□□□ -1.72
SMC6-207ENST00000448223 KRTAP23-1A1A580 65 aa4.29□□□□□ -1.72
SMC6-207ENST00000448223 KMT2CQ8NEZ4 4911 aaKnown RBP4.25□□□□□ -1.73
SMC6-207ENST00000448223 MT1HL1P0DM35 61 aa4.24□□□□□ -1.73
SMC6-207ENST00000448223 KRTAP21-3Q3LHN1 58 aa4.23□□□□□ -1.73
SMC6-207ENST00000448223 LRP2P98164 4655 aa4.23□□□□□ -1.73
SMC6-207ENST00000448223 KRTAP4-5Q9BYR2 181 aa4.22□□□□□ -1.73
SMC6-207ENST00000448223 RYR3Q15413 4870 aa4.22□□□□□ -1.73
SMC6-207ENST00000448223 HSPG2P98160 4391 aa4.19□□□□□ -1.74
SMC6-207ENST00000448223 PKHD1L1Q86WI1 4243 aa4.19□□□□□ -1.74
SMC6-207ENST00000448223 KRTAP17-1Q9BYP8 105 aa4.18□□□□□ -1.74
SMC6-207ENST00000448223 LORP23490 312 aaPredicted RBP4.16□□□□□ -1.74
SMC6-207ENST00000448223 RYR2Q92736 4967 aa4.11□□□□□ -1.75
SMC6-207ENST00000448223 LPAP08519 4548 aa4.1□□□□□ -1.75
SMC6-207ENST00000448223 TNXBP22105 4242 aa4.08□□□□□ -1.76
SMC6-207ENST00000448223 KRTAP4-1Q9BYQ7 146 aa4.02□□□□□ -1.77
SMC6-207ENST00000448223 EPPK1P58107 5090 aaKnown RBP4.01□□□□□ -1.77
SMC6-207ENST00000448223 KRTAP12-3P60328 96 aa4□□□□□ -1.77
SMC6-207ENST00000448223 KRTAP10-12P60413 245 aa4□□□□□ -1.77
SMC6-207ENST00000448223 MUC2Q02817 5179 aa3.97□□□□□ -1.77
SMC6-207ENST00000448223 ABCA13Q86UQ4 5058 aa3.96□□□□□ -1.78
SMC6-207ENST00000448223 CRCT1Q9UGL9 99 aa3.94□□□□□ -1.78
SMC6-207ENST00000448223 LCE3AQ5TA76 89 aa3.92□□□□□ -1.78
SMC6-207ENST00000448223 HERC2O95714 4834 aa3.91□□□□□ -1.78
SMC6-207ENST00000448223 KRTAP10-5P60370 271 aa3.89□□□□□ -1.79
SMC6-207ENST00000448223 FAT4Q6V0I7 4981 aa3.8□□□□□ -1.8
SMC6-207ENST00000448223 RNF213Q63HN8 5207 aa3.78□□□□□ -1.8
SMC6-207ENST00000448223 HERC1Q15751 4861 aa3.74□□□□□ -1.81
SMC6-207ENST00000448223 MUC17Q685J3 4493 aa3.71□□□□□ -1.82
SMC6-207ENST00000448223 PCLOQ9Y6V0 5065 aa3.67□□□□□ -1.82
SMC6-207ENST00000448223 KRTAP19-2Q3LHN2 52 aa3.67□□□□□ -1.82
SMC6-207ENST00000448223 UBR4Q5T4S7 5183 aa3.61□□□□□ -1.83
SMC6-207ENST00000448223 MT1FP04733 61 aa3.59□□□□□ -1.84
SMC6-207ENST00000448223 FLGP20930 4061 aaPredicted RBP3.58□□□□□ -1.84
SMC6-207ENST00000448223 MT1HP80294 61 aa3.58□□□□□ -1.84
SMC6-207ENST00000448223 KRTAP19-1Q8IUB9 90 aa3.57□□□□□ -1.84
SMC6-207ENST00000448223 HMCN2Q8NDA2 5059 aa3.57□□□□□ -1.84
SMC6-207ENST00000448223 MT2AP02795 61 aa3.56□□□□□ -1.84
SMC6-207ENST00000448223 SPRR2GQ9BYE4 73 aa3.56□□□□□ -1.84
SMC6-207ENST00000448223 FSIP2Q5CZC0 6907 aa3.53□□□□□ -1.84
SMC6-207ENST00000448223 LCE2CQ5TA81 110 aa3.51□□□□□ -1.85
SMC6-207ENST00000448223 BIRC6Q9NR09 4857 aa3.51□□□□□ -1.85
SMC6-207ENST00000448223 SPRR5A0A1B0GTR4 108 aa3.5□□□□□ -1.85
SMC6-207ENST00000448223 LCE3CQ5T5A8 94 aa3.47□□□□□ -1.85
SMC6-207ENST00000448223 KRTAP8-1Q8IUC2 63 aa3.45□□□□□ -1.86
SMC6-207ENST00000448223 KRTAP10-7P60409 375 aaPredicted RBP3.43□□□□□ -1.86
SMC6-207ENST00000448223 KRTAP12-4P60329 112 aa3.42□□□□□ -1.86
SMC6-207ENST00000448223 USH2AO75445 5202 aa3.42□□□□□ -1.86
SMC6-207ENST00000448223 KRTAP9-8Q9BYQ0 159 aa3.4□□□□□ -1.86
SMC6-207ENST00000448223 MT1XP80297 61 aa3.38□□□□□ -1.87
SMC6-207ENST00000448223 MT1BP07438 61 aa3.37□□□□□ -1.87
SMC6-207ENST00000448223 KRTAP19-5Q3LI72 72 aa3.37□□□□□ -1.87
SMC6-207ENST00000448223 KMT2DO14686 5537 aa3.37□□□□□ -1.87
SMC6-207ENST00000448223 KRTAP19-4Q3LI73 84 aa3.35□□□□□ -1.87
SMC6-207ENST00000448223 KRTAP19-8Q3LI54 63 aa3.35□□□□□ -1.87
SMC6-207ENST00000448223 KRTAP4-8A0A0G2JLE6 195 aa3.32□□□□□ -1.88
SMC6-207ENST00000448223 KRTAP4-8Q9BYQ9 185 aa3.32□□□□□ -1.88
SMC6-207ENST00000448223 OBSCNQ5VST9 7968 aa3.31□□□□□ -1.88
SMC6-207ENST00000448223 KRTAP9-3Q9BYQ3 159 aa3.24□□□□□ -1.89
SMC6-207ENST00000448223 KRTAP4-7Q9BYR0 210 aa3.24□□□□□ -1.89
SMC6-207ENST00000448223 DSTQ03001 7570 aaKnown RBP3.22□□□□□ -1.89
SMC6-207ENST00000448223 SYNE1Q8NF91 8797 aaKnown RBP3.22□□□□□ -1.89
SMC6-207ENST00000448223 LCE3BQ5TA77 95 aa3.21□□□□□ -1.9
SMC6-207ENST00000448223 LCE2BO14633 110 aa3.2□□□□□ -1.9
SMC6-207ENST00000448223 LCE3DQ9BYE3 92 aa3.16□□□□□ -1.9
SMC6-207ENST00000448223 FCGBPQ9Y6R7 5405 aaPredicted RBP3.16□□□□□ -1.9
SMC6-207ENST00000448223 LCE2DQ5TA82 110 aaPredicted RBP3.15□□□□□ -1.9
SMC6-207ENST00000448223 LCE3EQ5T5B0 92 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms