RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 SPRR2GQ9BYE4 73 aa3.45□□□□□ -1.86
LIMCH1-204ENST00000446625 Q6ZVQ6 151 aa3.44□□□□□ -1.86
LIMCH1-204ENST00000446625 FAM236AA0A1B0GUQ0 79 aa3.43□□□□□ -1.86
LIMCH1-204ENST00000446625 FAM236BA0A1B0GV22 79 aa3.43□□□□□ -1.86
LIMCH1-204ENST00000446625 LCE1AQ5T7P2 110 aa3.43□□□□□ -1.86
LIMCH1-204ENST00000446625 LINC00643Q86TS7 51 aa3.42□□□□□ -1.86
LIMCH1-204ENST00000446625 UBL5Q9BZL1 73 aa3.42□□□□□ -1.86
LIMCH1-204ENST00000446625 MT-ATP8P03928 68 aa3.41□□□□□ -1.86
LIMCH1-204ENST00000446625 NREPQ16612 68 aa3.41□□□□□ -1.86
LIMCH1-204ENST00000446625 SPRR2DP22532 72 aa3.4□□□□□ -1.87
LIMCH1-204ENST00000446625 IMUPQ9GZP8 106 aa3.4□□□□□ -1.87
LIMCH1-204ENST00000446625 IGKV3D-7A0A0C4DH55 119 aa3.39□□□□□ -1.87
LIMCH1-204ENST00000446625 CXCL6P80162 114 aa3.39□□□□□ -1.87
LIMCH1-204ENST00000446625 ATP5EP2Q5VTU8 51 aa3.39□□□□□ -1.87
LIMCH1-204ENST00000446625 C8orf17Q9NRJ1 99 aa3.39□□□□□ -1.87
LIMCH1-204ENST00000446625 BPY2O14599 106 aa3.37□□□□□ -1.87
LIMCH1-204ENST00000446625 NDUFB1O75438 58 aa3.37□□□□□ -1.87
LIMCH1-204ENST00000446625 C5orf47Q569G3 176 aa3.37□□□□□ -1.87
LIMCH1-204ENST00000446625 J3KT08 172 aa3.36□□□□□ -1.87
LIMCH1-204ENST00000446625 K7EQZ3 153 aa3.35□□□□□ -1.87
LIMCH1-204ENST00000446625 KRTAP15-1Q3LI76 137 aa3.35□□□□□ -1.87
LIMCH1-204ENST00000446625 KRTAP8-1Q8IUC2 63 aa3.35□□□□□ -1.87
LIMCH1-204ENST00000446625 Q8N9L7 120 aa3.35□□□□□ -1.87
LIMCH1-204ENST00000446625 IGKV2D-30A0A075B6S6 120 aa3.34□□□□□ -1.87
LIMCH1-204ENST00000446625 NDUFS5O43920 106 aa3.34□□□□□ -1.87
LIMCH1-204ENST00000446625 IGKV2-30P06310 120 aa3.34□□□□□ -1.87
LIMCH1-204ENST00000446625 A0A087WVE0 104 aa3.33□□□□□ -1.88
LIMCH1-204ENST00000446625 MMP24-AS1A0A0U1RRL7 71 aa3.33□□□□□ -1.88
LIMCH1-204ENST00000446625 HIST1H4AP62805 103 aaKnown RBP3.33□□□□□ -1.88
LIMCH1-204ENST00000446625 PRR15Q8IV56 129 aa3.33□□□□□ -1.88
LIMCH1-204ENST00000446625 KLKP1Q107X0 134 aa3.31□□□□□ -1.88
LIMCH1-204ENST00000446625 MRPL34Q9BQ48 92 aaKnown RBP3.31□□□□□ -1.88
LIMCH1-204ENST00000446625 SCGB1A1P11684 91 aa3.3□□□□□ -1.88
LIMCH1-204ENST00000446625 C4orf26Q17RF5 130 aa3.3□□□□□ -1.88
LIMCH1-204ENST00000446625 CSAG1Q6PB30 78 aa3.3□□□□□ -1.88
LIMCH1-204ENST00000446625 TMEM254Q8TBM7 123 aa3.3□□□□□ -1.88
LIMCH1-204ENST00000446625 hDV103S1A0JD37 113 aa3.29□□□□□ -1.88
LIMCH1-204ENST00000446625 HCG22E2RYF7 251 aa3.29□□□□□ -1.88
LIMCH1-204ENST00000446625 Q5W150 140 aa3.29□□□□□ -1.88
LIMCH1-204ENST00000446625 CASC2Q6XLA1 102 aa3.28□□□□□ -1.88
LIMCH1-204ENST00000446625 C7orf65Q6ZTY9 151 aa3.28□□□□□ -1.88
LIMCH1-204ENST00000446625 DSTQ03001 7570 aaKnown RBP3.28□□□□□ -1.89
LIMCH1-204ENST00000446625 KRTAP5-3Q6L8H2 238 aa3.27□□□□□ -1.89
LIMCH1-204ENST00000446625 S4R3F8 94 aa3.27□□□□□ -1.89
LIMCH1-204ENST00000446625 MT1XP80297 61 aa3.26□□□□□ -1.89
LIMCH1-204ENST00000446625 ATOX1O00244 68 aa3.25□□□□□ -1.89
LIMCH1-204ENST00000446625 LCA10Q71F78 164 aa3.25□□□□□ -1.89
LIMCH1-204ENST00000446625 OCR1Q9BZK8 76 aa3.25□□□□□ -1.89
LIMCH1-204ENST00000446625 CRIPTQ9P021 101 aa3.24□□□□□ -1.89
LIMCH1-204ENST00000446625 PRO2289Q9P1D8 64 aa3.24□□□□□ -1.89
LIMCH1-204ENST00000446625 TRAV7A0A075B6U4 112 aa3.23□□□□□ -1.89
LIMCH1-204ENST00000446625 KRTAP12-2P59991 146 aa3.23□□□□□ -1.89
LIMCH1-204ENST00000446625 SMIM20Q8N5G0 67 aa3.22□□□□□ -1.89
LIMCH1-204ENST00000446625 SERP2Q8N6R1 65 aa3.21□□□□□ -1.9
LIMCH1-204ENST00000446625 ANAPC13Q9BS18 74 aa3.21□□□□□ -1.9
LIMCH1-204ENST00000446625 UQCRQO14949 82 aa3.2□□□□□ -1.9
LIMCH1-204ENST00000446625 TP53AIP1Q9HCN2 124 aa3.2□□□□□ -1.9
LIMCH1-204ENST00000446625 COX7CP15954 63 aa3.19□□□□□ -1.9
LIMCH1-204ENST00000446625 PCP4P48539 62 aa3.18□□□□□ -1.9
LIMCH1-204ENST00000446625 C1orf64Q8NEQ6 169 aa3.18□□□□□ -1.9
LIMCH1-204ENST00000446625 TRAV22A0A0B4J277 110 aa3.17□□□□□ -1.9
LIMCH1-204ENST00000446625 H0Y9P7 68 aa3.17□□□□□ -1.9
LIMCH1-204ENST00000446625 HMCN1Q96RW7 5635 aa3.16□□□□□ -1.9
LIMCH1-204ENST00000446625 CCDC179H3BU77 68 aa3.16□□□□□ -1.9
LIMCH1-204ENST00000446625 AHNAK2Q8IVF2 5795 aa3.15□□□□□ -1.9
LIMCH1-204ENST00000446625 C20orf197Q8N268 126 aa3.15□□□□□ -1.91
LIMCH1-204ENST00000446625 H3BPC8 53 aa3.14□□□□□ -1.91
LIMCH1-204ENST00000446625 MP68P56378 58 aa3.14□□□□□ -1.91
LIMCH1-204ENST00000446625 LINC00208Q96KT6 92 aa3.14□□□□□ -1.91
LIMCH1-204ENST00000446625 CYSTM1Q9H1C7 97 aa3.14□□□□□ -1.91
LIMCH1-204ENST00000446625 PLAC4Q8WY50 150 aa3.13□□□□□ -1.91
LIMCH1-204ENST00000446625 SNURFQ9Y675 71 aa3.13□□□□□ -1.91
LIMCH1-204ENST00000446625 LOC101927531A0A1B0GV80 90 aa3.12□□□□□ -1.91
LIMCH1-204ENST00000446625 A8MUN3 132 aa3.11□□□□□ -1.91
LIMCH1-204ENST00000446625 CYP4F30PQ9H0H9 118 aa3.11□□□□□ -1.91
LIMCH1-204ENST00000446625 KRTAP10-7P60409 375 aaPredicted RBP3.1□□□□□ -1.91
LIMCH1-204ENST00000446625 H7BZZ5 65 aa3.09□□□□□ -1.91
LIMCH1-204ENST00000446625 NDUFC1O43677 76 aa3.08□□□□□ -1.92
LIMCH1-204ENST00000446625 KRTAP10-12P60413 245 aa3.08□□□□□ -1.92
LIMCH1-204ENST00000446625 KRTAP5-10Q6L8G5 202 aa3.06□□□□□ -1.92
LIMCH1-204ENST00000446625 H0YAA0 97 aa3.05□□□□□ -1.92
LIMCH1-204ENST00000446625 SPANXA2-OT1Q8N9U9 137 aa3.05□□□□□ -1.92
LIMCH1-204ENST00000446625 TMEM258P61165 79 aa3.04□□□□□ -1.92
LIMCH1-204ENST00000446625 ADM2Q7Z4H4 148 aa3.04□□□□□ -1.92
LIMCH1-204ENST00000446625 MT4P47944 62 aa3.02□□□□□ -1.93
LIMCH1-204ENST00000446625 ATP5EP56381 51 aaPredicted RBP3.01□□□□□ -1.93
LIMCH1-204ENST00000446625 DMAC1Q96GE9 116 aa3.01□□□□□ -1.93
LIMCH1-204ENST00000446625 KRTAP5-7Q6L8G8 165 aa2.98□□□□□ -1.93
LIMCH1-204ENST00000446625 R4GN34 69 aa2.98□□□□□ -1.93
LIMCH1-204ENST00000446625 SVIPQ8NHG7 77 aa2.97□□□□□ -1.93
LIMCH1-204ENST00000446625 ACYP2P14621 99 aa2.96□□□□□ -1.94
LIMCH1-204ENST00000446625 M0QZ58 72 aa2.95□□□□□ -1.94
LIMCH1-204ENST00000446625 LINC01554Q52M75 96 aa2.95□□□□□ -1.94
LIMCH1-204ENST00000446625 KRTAP19-3Q7Z4W3 81 aa2.95□□□□□ -1.94
LIMCH1-204ENST00000446625 COA5Q86WW8 74 aa2.95□□□□□ -1.94
LIMCH1-204ENST00000446625 SERP1Q9Y6X1 66 aa2.95□□□□□ -1.94
LIMCH1-204ENST00000446625 P0C880 135 aa2.94□□□□□ -1.94
LIMCH1-204ENST00000446625 RPS28P62857 69 aaKnown RBP2.92□□□□□ -1.94
LIMCH1-204ENST00000446625 KRTAP19-7Q3SYF9 63 aa2.92□□□□□ -1.94
LIMCH1-204ENST00000446625 MT1EP04732 61 aa2.91□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms