RNA–Protein interactions for RNA: ENST00000446312.5

DDR1-238, Transcript of discoidin domain receptor tyrosine kinase 1, human

TSL 5 BASIC

Gene DDR1, Length 3,202 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-238	ENST00000446312	H1FX-AS1	Q4G0G2	97 aa		6.66	□□□□□ -1.34
DDR1-238	ENST00000446312	FAT3	Q8TDW7	4589 aa		6.65	□□□□□ -1.35
DDR1-238	ENST00000446312	TPRXL	Q17RH7	258 aa		6.62	□□□□□ -1.35
DDR1-238	ENST00000446312	KRTAP15-1	Q3LI76	137 aa		6.62	□□□□□ -1.35
DDR1-238	ENST00000446312	COX6B2	Q6YFQ2	88 aa		6.61	□□□□□ -1.35
DDR1-238	ENST00000446312	APOB	P04114	4563 aa	Known RBP	6.61	□□□□□ -1.35
DDR1-238	ENST00000446312	HSPG2	P98160	4391 aa		6.59	□□□□□ -1.35
DDR1-238	ENST00000446312	KMT2C	Q8NEZ4	4911 aa	Known RBP	6.57	□□□□□ -1.36
DDR1-238	ENST00000446312	KRTAP10-8	P60410	259 aa		6.54	□□□□□ -1.36
DDR1-238	ENST00000446312	KRTAP13-4	Q3LI77	160 aa		6.52	□□□□□ -1.37
DDR1-238	ENST00000446312	RPL37	P61927	97 aa	Known RBP	6.51	□□□□□ -1.37
DDR1-238	ENST00000446312	LPA	P08519	4548 aa		6.48	□□□□□ -1.37
DDR1-238	ENST00000446312	PKHD1L1	Q86WI1	4243 aa		6.47	□□□□□ -1.37
DDR1-238	ENST00000446312	RPS29	P62273	56 aa	Known RBP	6.44	□□□□□ -1.38
DDR1-238	ENST00000446312	RYR2	Q92736	4967 aa		6.44	□□□□□ -1.38
DDR1-238	ENST00000446312	KRTAP21-3	Q3LHN1	58 aa		6.42	□□□□□ -1.38
DDR1-238	ENST00000446312	KIAA1109	Q2LD37	5005 aa		6.42	□□□□□ -1.38
DDR1-238	ENST00000446312	KRTAP10-4	P60372	401 aa	Predicted RBP	6.42	□□□□□ -1.38
DDR1-238	ENST00000446312		A0A1B0GVY2	172 aa		6.42	□□□□□ -1.38
DDR1-238	ENST00000446312	LRP2	P98164	4655 aa		6.41	□□□□□ -1.38
DDR1-238	ENST00000446312	KRTAP10-6	P60371	365 aa	Predicted RBP	6.4	□□□□□ -1.39
DDR1-238	ENST00000446312	KRTAP3-3	Q9BYR6	98 aa		6.38	□□□□□ -1.39
DDR1-238	ENST00000446312		S4R3F8	94 aa		6.38	□□□□□ -1.39
DDR1-238	ENST00000446312		Q5VSD8	79 aa		6.37	□□□□□ -1.39
DDR1-238	ENST00000446312	SEC61B	P60468	96 aa	Known RBP	6.35	□□□□□ -1.39
DDR1-238	ENST00000446312	RYR1	P21817	5038 aa		6.34	□□□□□ -1.39
DDR1-238	ENST00000446312	XP32	Q5T750	250 aa		6.34	□□□□□ -1.39
DDR1-238	ENST00000446312	KRTAP12-2	P59991	146 aa		6.32	□□□□□ -1.4
DDR1-238	ENST00000446312	KRTAP17-1	Q9BYP8	105 aa		6.32	□□□□□ -1.4
DDR1-238	ENST00000446312	KRTAP3-2	Q9BYR7	98 aa		6.32	□□□□□ -1.4
DDR1-238	ENST00000446312	RYR3	Q15413	4870 aa		6.31	□□□□□ -1.4
DDR1-238	ENST00000446312	TNXB	P22105	4242 aa		6.28	□□□□□ -1.4
DDR1-238	ENST00000446312	ABCA13	Q86UQ4	5058 aa		6.19	□□□□□ -1.42
DDR1-238	ENST00000446312	PLAC4	Q8WY50	150 aa		6.17	□□□□□ -1.42
DDR1-238	ENST00000446312	KRTAP12-1	P59990	96 aa		6.14	□□□□□ -1.43
DDR1-238	ENST00000446312		M0QZ58	72 aa		6.14	□□□□□ -1.43
DDR1-238	ENST00000446312	MUC2	Q02817	5179 aa		6.13	□□□□□ -1.43
DDR1-238	ENST00000446312	EPPK1	P58107	5090 aa	Known RBP	6.12	□□□□□ -1.43
DDR1-238	ENST00000446312		R4GN34	69 aa		6.06	□□□□□ -1.44
DDR1-238	ENST00000446312	MT1HL1	P0DM35	61 aa		6.06	□□□□□ -1.44
DDR1-238	ENST00000446312	LOR	P23490	312 aa	Predicted RBP	6.05	□□□□□ -1.44
DDR1-238	ENST00000446312	KRTAP4-5	Q9BYR2	181 aa		6.04	□□□□□ -1.44
DDR1-238	ENST00000446312	CAMK2N1	Q7Z7J9	78 aa		5.93	□□□□□ -1.46
DDR1-238	ENST00000446312	KRTAP4-1	Q9BYQ7	146 aa		5.87	□□□□□ -1.47
DDR1-238	ENST00000446312	FAT4	Q6V0I7	4981 aa		5.81	□□□□□ -1.48
DDR1-238	ENST00000446312	HERC2	O95714	4834 aa		5.78	□□□□□ -1.48
DDR1-238	ENST00000446312	HERC1	Q15751	4861 aa		5.71	□□□□□ -1.5
DDR1-238	ENST00000446312	MUC17	Q685J3	4493 aa		5.69	□□□□□ -1.5
DDR1-238	ENST00000446312	PRO2289	Q9P1D8	64 aa		5.69	□□□□□ -1.5
DDR1-238	ENST00000446312	RNF213	Q63HN8	5207 aa		5.68	□□□□□ -1.5
DDR1-238	ENST00000446312	PCLO	Q9Y6V0	5065 aa		5.63	□□□□□ -1.51
DDR1-238	ENST00000446312	KRTAP23-1	A1A580	65 aa		5.6	□□□□□ -1.51
DDR1-238	ENST00000446312	PP632	Q6XCG6	107 aa		5.57	□□□□□ -1.52
DDR1-238	ENST00000446312		M0R2T5	61 aa		5.53	□□□□□ -1.52
DDR1-238	ENST00000446312	LCE2D	Q5TA82	110 aa	Predicted RBP	5.52	□□□□□ -1.53
DDR1-238	ENST00000446312	KRTAP19-2	Q3LHN2	52 aa		5.49	□□□□□ -1.53
DDR1-238	ENST00000446312	HMCN2	Q8NDA2	5059 aa		5.47	□□□□□ -1.53
DDR1-238	ENST00000446312	UBR4	Q5T4S7	5183 aa		5.45	□□□□□ -1.54
DDR1-238	ENST00000446312	TNP1	P09430	55 aa		5.44	□□□□□ -1.54
DDR1-238	ENST00000446312	BIRC6	Q9NR09	4857 aa		5.43	□□□□□ -1.54
DDR1-238	ENST00000446312	FLG	P20930	4061 aa	Predicted RBP	5.42	□□□□□ -1.54
DDR1-238	ENST00000446312	INE1	O15225	51 aa		5.38	□□□□□ -1.55
DDR1-238	ENST00000446312	LCE2C	Q5TA81	110 aa		5.38	□□□□□ -1.55
DDR1-238	ENST00000446312	LCE2A	Q5TA79	106 aa	Predicted RBP	5.32	□□□□□ -1.56
DDR1-238	ENST00000446312	SPRR5	A0A1B0GTR4	108 aa		5.29	□□□□□ -1.56
DDR1-238	ENST00000446312	KRTAP10-10	P60014	251 aa		5.29	□□□□□ -1.56
DDR1-238	ENST00000446312	LCE3A	Q5TA76	89 aa		5.25	□□□□□ -1.57
DDR1-238	ENST00000446312	USH2A	O75445	5202 aa		5.2	□□□□□ -1.58
DDR1-238	ENST00000446312	LCE2B	O14633	110 aa		5.18	□□□□□ -1.58
DDR1-238	ENST00000446312	KRTAP19-1	Q8IUB9	90 aa		5.18	□□□□□ -1.58
DDR1-238	ENST00000446312	KMT2D	O14686	5537 aa		5.16	□□□□□ -1.58
DDR1-238	ENST00000446312	MT1F	P04733	61 aa		5.14	□□□□□ -1.59
DDR1-238	ENST00000446312	MT1H	P80294	61 aa		5.08	□□□□□ -1.6
DDR1-238	ENST00000446312	MT2A	P02795	61 aa		5.06	□□□□□ -1.6
DDR1-238	ENST00000446312	SPRR2G	Q9BYE4	73 aa		5.03	□□□□□ -1.6
DDR1-238	ENST00000446312	FSIP2	Q5CZC0	6907 aa		5.01	□□□□□ -1.61
DDR1-238	ENST00000446312	KRTAP10-7	P60409	375 aa	Predicted RBP	4.95	□□□□□ -1.62
DDR1-238	ENST00000446312	KRTAP9-8	Q9BYQ0	159 aa		4.94	□□□□□ -1.62
DDR1-238	ENST00000446312	KRTAP12-3	P60328	96 aa		4.91	□□□□□ -1.62
DDR1-238	ENST00000446312	KRTAP10-12	P60413	245 aa		4.9	□□□□□ -1.62
DDR1-238	ENST00000446312	KRTAP10-5	P60370	271 aa		4.9	□□□□□ -1.63
DDR1-238	ENST00000446312	MT1X	P80297	61 aa		4.9	□□□□□ -1.63
DDR1-238	ENST00000446312	MT1B	P07438	61 aa		4.89	□□□□□ -1.63
DDR1-238	ENST00000446312	KRTAP8-1	Q8IUC2	63 aa		4.8	□□□□□ -1.64
DDR1-238	ENST00000446312	KRTAP4-8	A0A0G2JLE6	195 aa		4.78	□□□□□ -1.64
DDR1-238	ENST00000446312	KRTAP4-8	Q9BYQ9	185 aa		4.78	□□□□□ -1.64
DDR1-238	ENST00000446312	KRTAP19-8	Q3LI54	63 aa		4.74	□□□□□ -1.65
DDR1-238	ENST00000446312	KRTAP19-5	Q3LI72	72 aa		4.74	□□□□□ -1.65
DDR1-238	ENST00000446312	KRTAP4-7	Q9BYR0	210 aa		4.72	□□□□□ -1.65
DDR1-238	ENST00000446312	KRTAP9-3	Q9BYQ3	159 aa		4.69	□□□□□ -1.66
DDR1-238	ENST00000446312	DST	Q03001	7570 aa	Known RBP	4.65	□□□□□ -1.67
DDR1-238	ENST00000446312	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	4.55	□□□□□ -1.68
DDR1-238	ENST00000446312	KRTAP9-6	A8MVA2	160 aa		4.55	□□□□□ -1.68
DDR1-238	ENST00000446312	LCE3C	Q5T5A8	94 aa		4.55	□□□□□ -1.68
DDR1-238	ENST00000446312	OBSCN	Q5VST9	7968 aa		4.55	□□□□□ -1.68
DDR1-238	ENST00000446312	CRCT1	Q9UGL9	99 aa		4.51	□□□□□ -1.69
DDR1-238	ENST00000446312	SYNE1	Q8NF91	8797 aa	Known RBP	4.5	□□□□□ -1.69
DDR1-238	ENST00000446312	MUC12	Q9UKN1	5478 aa		4.5	□□□□□ -1.69
DDR1-238	ENST00000446312	SSPO	A2VEC9	5147 aa		4.4	□□□□□ -1.71
DDR1-238	ENST00000446312	KRTAP4-3	Q9BYR4	195 aa		4.38	□□□□□ -1.71

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