RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 AKAP9Q99996 3911 aa0.19□□□□□ -2.38
CCDC88A-206ENST00000430086 COL12A1Q99715 3063 aa0.19□□□□□ -2.38
CCDC88A-206ENST00000430086 CCDC168Q8NDH2 2452 aa0.19□□□□□ -2.38
CCDC88A-206ENST00000430086 PKHD1L1Q86WI1 4243 aa0.18□□□□□ -2.38
CCDC88A-206ENST00000430086 RPL39P62891 51 aaKnown RBP0.17□□□□□ -2.38
CCDC88A-206ENST00000430086 MROH2BQ7Z745 1585 aa0.17□□□□□ -2.38
CCDC88A-206ENST00000430086 KRTAP8-1Q8IUC2 63 aa0.17□□□□□ -2.38
CCDC88A-206ENST00000430086 MXRA5Q9NR99 2828 aa0.17□□□□□ -2.38
CCDC88A-206ENST00000430086 WDR87Q6ZQQ6 2873 aa0.16□□□□□ -2.38
CCDC88A-206ENST00000430086 TLN2Q9Y4G6 2542 aa0.16□□□□□ -2.38
CCDC88A-206ENST00000430086 FAT3Q8TDW7 4589 aa0.15□□□□□ -2.39
CCDC88A-206ENST00000430086 TOMM7Q9P0U1 55 aa0.14□□□□□ -2.39
CCDC88A-206ENST00000430086 DUOX1Q9NRD9 1551 aa0.14□□□□□ -2.39
CCDC88A-206ENST00000430086 DNAH11Q96DT5 4516 aa0.13□□□□□ -2.39
CCDC88A-206ENST00000430086 DNAH2Q9P225 4427 aa0.13□□□□□ -2.39
CCDC88A-206ENST00000430086 SSPOA2VEC9 5147 aa0.12□□□□□ -2.39
CCDC88A-206ENST00000430086 TRIOO75962 3097 aa0.12□□□□□ -2.39
CCDC88A-206ENST00000430086 USP9XQ93008 2570 aaPredicted RBP0.12□□□□□ -2.39
CCDC88A-206ENST00000430086 APOBP04114 4563 aaKnown RBP0.11□□□□□ -2.39
CCDC88A-206ENST00000430086 FRYQ5TBA9 3013 aa0.11□□□□□ -2.39
CCDC88A-206ENST00000430086 LAMA1P25391 3075 aa0.09□□□□□ -2.4
CCDC88A-206ENST00000430086 LAMA5O15230 3695 aa0.08□□□□□ -2.4
CCDC88A-206ENST00000430086 DEFB1P60022 68 aa0.08□□□□□ -2.4
CCDC88A-206ENST00000430086 USP9YO00507 2555 aaPredicted RBP0.07□□□□□ -2.4
CCDC88A-206ENST00000430086 CELSR3Q9NYQ7 3312 aa0.07□□□□□ -2.4
CCDC88A-206ENST00000430086 KRTAP19-5Q3LI72 72 aa0.07□□□□□ -2.4
CCDC88A-206ENST00000430086 RPL39LQ96EH5 51 aaKnown RBP0.07□□□□□ -2.4
CCDC88A-206ENST00000430086 GCC2Q8IWJ2 1684 aa0.07□□□□□ -2.4
CCDC88A-206ENST00000430086 DYNC2H1Q8NCM8 4307 aaKnown RBP0.06□□□□□ -2.4
CCDC88A-206ENST00000430086 SPENQ96T58 3664 aaKnown RBP0.06□□□□□ -2.4
CCDC88A-206ENST00000430086 ITPR1Q14643 2758 aa0.06□□□□□ -2.4
CCDC88A-206ENST00000430086 SMR3BP02814 79 aaPredicted RBP0.05□□□□□ -2.4
CCDC88A-206ENST00000430086 DNAH6Q9C0G6 4158 aa0.04□□□□□ -2.4
CCDC88A-206ENST00000430086 CHD7Q9P2D1 2997 aa0.03□□□□□ -2.4
CCDC88A-206ENST00000430086 NBPF19A0A087WUL8 3843 aa0.03□□□□□ -2.41
CCDC88A-206ENST00000430086 KRTAP19-7Q3SYF9 63 aa0.01□□□□□ -2.41
CCDC88A-206ENST00000430086 LINC01590Q5TEZ4 76 aa0.01□□□□□ -2.41
CCDC88A-206ENST00000430086 DSTQ03001 7570 aaKnown RBP0.01□□□□□ -2.41
CCDC88A-206ENST00000430086 VPS13DQ5THJ4 4388 aa0□□□□□ -2.41
CCDC88A-206ENST00000430086 DNAH1Q9P2D7 4330 aa-0.01□□□□□ -2.41
CCDC88A-206ENST00000430086 KRTAP6-1Q3LI64 71 aa-0.01□□□□□ -2.41
CCDC88A-206ENST00000430086 LEAP2Q969E1 77 aa-0.01□□□□□ -2.41
CCDC88A-206ENST00000430086 SPTBN5Q9NRC6 3674 aaKnown RBP-0.01□□□□□ -2.41
CCDC88A-206ENST00000430086 ITPR3Q14573 2671 aa-0.01□□□□□ -2.41
CCDC88A-206ENST00000430086 CRYBG3Q68DQ2 2970 aa-0.02□□□□□ -2.41
CCDC88A-206ENST00000430086 PCLOQ9Y6V0 5065 aa-0.02□□□□□ -2.41
CCDC88A-206ENST00000430086 FAT1Q14517 4588 aa-0.03□□□□□ -2.41
CCDC88A-206ENST00000430086 SPTAN1Q13813 2472 aaKnown RBP-0.03□□□□□ -2.41
CCDC88A-206ENST00000430086 DNAH8Q96JB1 4490 aa-0.04□□□□□ -2.42
CCDC88A-206ENST00000430086 MUC2Q02817 5179 aa-0.05□□□□□ -2.42
CCDC88A-206ENST00000430086 MT1HP80294 61 aa-0.05□□□□□ -2.42
CCDC88A-206ENST00000430086 DNAH7Q8WXX0 4024 aa-0.05□□□□□ -2.42
CCDC88A-206ENST00000430086 NEBP20929 6669 aa-0.07□□□□□ -2.42
CCDC88A-206ENST00000430086 KRTAP19-8Q3LI54 63 aa-0.07□□□□□ -2.42
CCDC88A-206ENST00000430086 HERC1Q15751 4861 aa-0.08□□□□□ -2.42
CCDC88A-206ENST00000430086 ADGRG4Q8IZF6 3080 aa-0.1□□□□□ -2.42
CCDC88A-206ENST00000430086 MUC12Q9UKN1 5478 aa-0.1□□□□□ -2.43
CCDC88A-206ENST00000430086 C5orf42Q9H799 3197 aa-0.11□□□□□ -2.43
CCDC88A-206ENST00000430086 MGAQ8IWI9 3026 aa-0.12□□□□□ -2.43
CCDC88A-206ENST00000430086 RELNP78509 3460 aa-0.13□□□□□ -2.43
CCDC88A-206ENST00000430086 KMT2CQ8NEZ4 4911 aaKnown RBP-0.14□□□□□ -2.43
CCDC88A-206ENST00000430086 ZFHX4Q86UP3 3567 aa-0.15□□□□□ -2.43
CCDC88A-206ENST00000430086 DEFB136Q30KP8 78 aa-0.16□□□□□ -2.44
CCDC88A-206ENST00000430086 ARHGAP5-AS1Q96IT6 56 aa-0.16□□□□□ -2.44
CCDC88A-206ENST00000430086 PLECQ15149 4684 aaKnown RBP-0.17□□□□□ -2.44
CCDC88A-206ENST00000430086 MUC17Q685J3 4493 aa-0.17□□□□□ -2.44
CCDC88A-206ENST00000430086 STARD9Q9P2P6 4700 aa-0.17□□□□□ -2.44
CCDC88A-206ENST00000430086 DOPEY1Q5JWR5 2465 aa-0.18□□□□□ -2.44
CCDC88A-206ENST00000430086 MT1EP04732 61 aa-0.18□□□□□ -2.44
CCDC88A-206ENST00000430086 RHPN1-AS1Q9BWJ2 59 aa-0.18□□□□□ -2.44
CCDC88A-206ENST00000430086 LAMA3Q16787 3333 aa-0.18□□□□□ -2.44
CCDC88A-206ENST00000430086 LRBAP50851 2863 aa-0.19□□□□□ -2.44
CCDC88A-206ENST00000430086 CSMD1Q96PZ7 3565 aa-0.19□□□□□ -2.44
CCDC88A-206ENST00000430086 DNAH10Q8IVF4 4471 aa-0.2□□□□□ -2.44
CCDC88A-206ENST00000430086 MT4P47944 62 aa-0.2□□□□□ -2.44
CCDC88A-206ENST00000430086 KRTAP20-2Q3LI61 65 aa-0.2□□□□□ -2.44
CCDC88A-206ENST00000430086 DMXL2Q8TDJ6 3036 aa-0.21□□□□□ -2.44
CCDC88A-206ENST00000430086 MT1XP80297 61 aa-0.21□□□□□ -2.44
CCDC88A-206ENST00000430086 MT1LQ93083 61 aa-0.21□□□□□ -2.44
CCDC88A-206ENST00000430086 CMYA5Q8N3K9 4069 aa-0.22□□□□□ -2.44
CCDC88A-206ENST00000430086 TEX15Q9BXT5 2789 aa-0.23□□□□□ -2.45
CCDC88A-206ENST00000430086 UBR4Q5T4S7 5183 aa-0.23□□□□□ -2.45
CCDC88A-206ENST00000430086 DYNC1H1Q14204 4646 aaKnown RBP-0.24□□□□□ -2.45
CCDC88A-206ENST00000430086 MYO9AB2RTY4 2548 aa-0.24□□□□□ -2.45
CCDC88A-206ENST00000430086 USH2AO75445 5202 aa-0.24□□□□□ -2.45
CCDC88A-206ENST00000430086 DEFB104AQ8WTQ1 72 aa-0.25□□□□□ -2.45
CCDC88A-206ENST00000430086 RYR1P21817 5038 aa-0.25□□□□□ -2.45
CCDC88A-206ENST00000430086 RYR3Q15413 4870 aa-0.26□□□□□ -2.45
CCDC88A-206ENST00000430086 CFAP46Q8IYW2 2715 aa-0.27□□□□□ -2.45
CCDC88A-206ENST00000430086 DNAH17Q9UFH2 4485 aa-0.27□□□□□ -2.45
CCDC88A-206ENST00000430086 DEFB4AO15263 64 aa-0.27□□□□□ -2.45
CCDC88A-206ENST00000430086 CEP250Q9BV73 2442 aa-0.28□□□□□ -2.45
CCDC88A-206ENST00000430086 PRCDQ00LT1 54 aa-0.28□□□□□ -2.45
CCDC88A-206ENST00000430086 SRCAPQ6ZRS2 3230 aa-0.28□□□□□ -2.45
CCDC88A-206ENST00000430086 LAMA2P24043 3122 aaKnown RBP-0.3□□□□□ -2.46
CCDC88A-206ENST00000430086 A0A096LNI7 61 aa-0.31□□□□□ -2.46
CCDC88A-206ENST00000430086 K7EIM0 57 aa-0.31□□□□□ -2.46
CCDC88A-206ENST00000430086 MT1HL1P0DM35 61 aa-0.31□□□□□ -2.46
CCDC88A-206ENST00000430086 RNF213Q63HN8 5207 aa-0.31□□□□□ -2.46
CCDC88A-206ENST00000430086 HERC2O95714 4834 aa-0.31□□□□□ -2.46
Retrieved 100 of 20,778 RNA–protein pairs in 131.6 ms