RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 KRTAP12-3P60328 96 aa1.4□□□□□ -2.19
SYNE1-212ENST00000423061 VPS13CQ709C8 3753 aa1.39□□□□□ -2.19
SYNE1-212ENST00000423061 DNAH7Q8WXX0 4024 aa1.39□□□□□ -2.19
SYNE1-212ENST00000423061 DNHD1Q96M86 4753 aa1.38□□□□□ -2.19
SYNE1-212ENST00000423061 LCE2CQ5TA81 110 aa1.38□□□□□ -2.19
SYNE1-212ENST00000423061 TRRAPQ9Y4A5 3859 aa1.38□□□□□ -2.19
SYNE1-212ENST00000423061 DNAH10Q8IVF4 4471 aa1.37□□□□□ -2.19
SYNE1-212ENST00000423061 ANK3Q12955 4377 aaKnown RBP1.36□□□□□ -2.19
SYNE1-212ENST00000423061 ZNF469Q96JG9 3925 aaPredicted RBP1.36□□□□□ -2.19
SYNE1-212ENST00000423061 DNAH5Q8TE73 4624 aa1.36□□□□□ -2.19
SYNE1-212ENST00000423061 DNAH11Q96DT5 4516 aa1.35□□□□□ -2.19
SYNE1-212ENST00000423061 PLECQ15149 4684 aaKnown RBP1.35□□□□□ -2.19
SYNE1-212ENST00000423061 DNAH2Q9P225 4427 aa1.34□□□□□ -2.19
SYNE1-212ENST00000423061 ANK2Q01484 3957 aa1.34□□□□□ -2.19
SYNE1-212ENST00000423061 HECTD4Q9Y4D8 3996 aa1.34□□□□□ -2.2
SYNE1-212ENST00000423061 KRTAP10-5P60370 271 aa1.32□□□□□ -2.2
SYNE1-212ENST00000423061 DNAH1Q9P2D7 4330 aa1.31□□□□□ -2.2
SYNE1-212ENST00000423061 DNAH8Q96JB1 4490 aa1.31□□□□□ -2.2
SYNE1-212ENST00000423061 SACSQ9NZJ4 4579 aa1.3□□□□□ -2.2
SYNE1-212ENST00000423061 DNAH17Q9UFH2 4485 aa1.29□□□□□ -2.2
SYNE1-212ENST00000423061 LCE2AQ5TA79 106 aaPredicted RBP1.29□□□□□ -2.2
SYNE1-212ENST00000423061 APOBP04114 4563 aaKnown RBP1.29□□□□□ -2.2
SYNE1-212ENST00000423061 CRCT1Q9UGL9 99 aa1.29□□□□□ -2.2
SYNE1-212ENST00000423061 CSMD3Q7Z407 3707 aa1.28□□□□□ -2.2
SYNE1-212ENST00000423061 KRTAP12-4P60329 112 aa1.28□□□□□ -2.2
SYNE1-212ENST00000423061 DYNC1H1Q14204 4646 aaKnown RBP1.28□□□□□ -2.2
SYNE1-212ENST00000423061 LRP1BQ9NZR2 4599 aa1.27□□□□□ -2.21
SYNE1-212ENST00000423061 FAT1Q14517 4588 aa1.27□□□□□ -2.21
SYNE1-212ENST00000423061 KMT2AQ03164 3969 aa1.27□□□□□ -2.21
SYNE1-212ENST00000423061 CMYA5Q8N3K9 4069 aa1.27□□□□□ -2.21
SYNE1-212ENST00000423061 LCE3CQ5T5A8 94 aa1.27□□□□□ -2.21
SYNE1-212ENST00000423061 SPRR2GQ9BYE4 73 aa1.27□□□□□ -2.21
SYNE1-212ENST00000423061 DNAH9Q9NYC9 4486 aa1.26□□□□□ -2.21
SYNE1-212ENST00000423061 LYSTQ99698 3801 aa1.25□□□□□ -2.21
SYNE1-212ENST00000423061 DYNC2H1Q8NCM8 4307 aaKnown RBP1.25□□□□□ -2.21
SYNE1-212ENST00000423061 HSPG2P98160 4391 aa1.25□□□□□ -2.21
SYNE1-212ENST00000423061 KRTAP4-5Q9BYR2 181 aa1.25□□□□□ -2.21
SYNE1-212ENST00000423061 LCE2BO14633 110 aa1.24□□□□□ -2.21
SYNE1-212ENST00000423061 KRTAP19-5Q3LI72 72 aa1.24□□□□□ -2.21
SYNE1-212ENST00000423061 KRTAP8-1Q8IUC2 63 aa1.24□□□□□ -2.21
SYNE1-212ENST00000423061 KRTAP4-1Q9BYQ7 146 aa1.24□□□□□ -2.21
SYNE1-212ENST00000423061 DNAH3Q8TD57 4116 aa1.23□□□□□ -2.21
SYNE1-212ENST00000423061 VPS13DQ5THJ4 4388 aa1.23□□□□□ -2.21
SYNE1-212ENST00000423061 MYCBP2O75592 4640 aa1.23□□□□□ -2.21
SYNE1-212ENST00000423061 MT2AP02795 61 aa1.22□□□□□ -2.21
SYNE1-212ENST00000423061 DNAH6Q9C0G6 4158 aa1.22□□□□□ -2.21
SYNE1-212ENST00000423061 FAT3Q8TDW7 4589 aa1.21□□□□□ -2.22
SYNE1-212ENST00000423061 MT1HP80294 61 aa1.2□□□□□ -2.22
SYNE1-212ENST00000423061 MT1FP04733 61 aa1.2□□□□□ -2.22
SYNE1-212ENST00000423061 FLGP20930 4061 aaPredicted RBP1.19□□□□□ -2.22
SYNE1-212ENST00000423061 KRTAP10-7P60409 375 aaPredicted RBP1.19□□□□□ -2.22
SYNE1-212ENST00000423061 FAT2Q9NYQ8 4349 aa1.18□□□□□ -2.22
SYNE1-212ENST00000423061 FRAS1Q86XX4 4008 aa1.17□□□□□ -2.22
SYNE1-212ENST00000423061 KRTAP2-2Q9BYT5 123 aa1.17□□□□□ -2.22
SYNE1-212ENST00000423061 VPS13BQ7Z7G8 4022 aa1.17□□□□□ -2.22
SYNE1-212ENST00000423061 KRTAP4-7Q9BYR0 210 aa1.16□□□□□ -2.22
SYNE1-212ENST00000423061 MT1XP80297 61 aa1.16□□□□□ -2.22
SYNE1-212ENST00000423061 KRTAP2-3P0C7H8 128 aa1.16□□□□□ -2.22
SYNE1-212ENST00000423061 KRTAP2-4Q9BYR9 128 aa1.16□□□□□ -2.22
SYNE1-212ENST00000423061 KRTAP2-1Q9BYU5 128 aa1.16□□□□□ -2.22
SYNE1-212ENST00000423061 SYNE2Q8WXH0 6885 aaKnown RBP1.16□□□□□ -2.22
SYNE1-212ENST00000423061 KRTAP19-8Q3LI54 63 aa1.16□□□□□ -2.22
SYNE1-212ENST00000423061 RYR2Q92736 4967 aa1.16□□□□□ -2.22
SYNE1-212ENST00000423061 RYR1P21817 5038 aa1.15□□□□□ -2.22
SYNE1-212ENST00000423061 PRM1P04553 51 aa1.15□□□□□ -2.22
SYNE1-212ENST00000423061 STARD9Q9P2P6 4700 aa1.15□□□□□ -2.23
SYNE1-212ENST00000423061 BIRC6Q9NR09 4857 aa1.15□□□□□ -2.23
SYNE1-212ENST00000423061 PRKDCP78527 4128 aaKnown RBP1.15□□□□□ -2.23
SYNE1-212ENST00000423061 LCE1AQ5T7P2 110 aa1.14□□□□□ -2.23
SYNE1-212ENST00000423061 HERC1Q15751 4861 aa1.14□□□□□ -2.23
SYNE1-212ENST00000423061 KRTAP19-1Q8IUB9 90 aa1.13□□□□□ -2.23
SYNE1-212ENST00000423061 KRTAP9-6A8MVA2 160 aa1.13□□□□□ -2.23
SYNE1-212ENST00000423061 RYR3Q15413 4870 aa1.13□□□□□ -2.23
SYNE1-212ENST00000423061 FSIP2Q5CZC0 6907 aa1.13□□□□□ -2.23
SYNE1-212ENST00000423061 KRTAP4-9Q9BYQ8 210 aa1.13□□□□□ -2.23
SYNE1-212ENST00000423061 LCE3BQ5TA77 95 aa1.13□□□□□ -2.23
SYNE1-212ENST00000423061 KMT2CQ8NEZ4 4911 aaKnown RBP1.13□□□□□ -2.23
SYNE1-212ENST00000423061 SPRR2FQ96RM1 72 aa1.12□□□□□ -2.23
SYNE1-212ENST00000423061 LCE5AQ5TCM9 118 aa1.12□□□□□ -2.23
SYNE1-212ENST00000423061 PKHD1P08F94 4074 aa1.11□□□□□ -2.23
SYNE1-212ENST00000423061 LCE1EQ5T753 118 aa1.11□□□□□ -2.23
SYNE1-212ENST00000423061 KRTAP17-1Q9BYP8 105 aa1.11□□□□□ -2.23
SYNE1-212ENST00000423061 MT1BP07438 61 aa1.11□□□□□ -2.23
SYNE1-212ENST00000423061 LRP1Q07954 4544 aaKnown RBP1.1□□□□□ -2.23
SYNE1-212ENST00000423061 MACF1Q9UPN3 7388 aaKnown RBP1.1□□□□□ -2.23
SYNE1-212ENST00000423061 MUC17Q685J3 4493 aa1.1□□□□□ -2.23
SYNE1-212ENST00000423061 LOC100996750A0A140TA64 210 aa1.1□□□□□ -2.23
SYNE1-212ENST00000423061 MT1GP13640 62 aa1.09□□□□□ -2.24
SYNE1-212ENST00000423061 LRP2P98164 4655 aa1.08□□□□□ -2.24
SYNE1-212ENST00000423061 KRTAP6-3Q3LI67 103 aa1.08□□□□□ -2.24
SYNE1-212ENST00000423061 KRTAP9-7A8MTY7 169 aa1.08□□□□□ -2.24
SYNE1-212ENST00000423061 HYDINQ4G0P3 5121 aa1.08□□□□□ -2.24
SYNE1-212ENST00000423061 GPR98Q8WXG9 6306 aa1.08□□□□□ -2.24
SYNE1-212ENST00000423061 KRTAP4-8A0A0G2JLE6 195 aa1.07□□□□□ -2.24
SYNE1-212ENST00000423061 KRTAP4-8Q9BYQ9 185 aa1.07□□□□□ -2.24
SYNE1-212ENST00000423061 PCLOQ9Y6V0 5065 aa1.07□□□□□ -2.24
SYNE1-212ENST00000423061 HERC2O95714 4834 aa1.07□□□□□ -2.24
SYNE1-212ENST00000423061 PKD1P98161 4303 aa1.07□□□□□ -2.24
SYNE1-212ENST00000423061 EPPK1P58107 5090 aaKnown RBP1.07□□□□□ -2.24
SYNE1-212ENST00000423061 KRTAP9-6A0A140TA67 174 aa1.06□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms