RNA–Protein interactions for RNA: ENST00000419533.1

UBR4-206, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 5,583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-206ENST00000419533 DNAH6Q9C0G6 4158 aa4.06□□□□□ -1.76
UBR4-206ENST00000419533 KRTAP12-2P59991 146 aa4.04□□□□□ -1.76
UBR4-206ENST00000419533 KRTAP13-4Q3LI77 160 aa4.03□□□□□ -1.76
UBR4-206ENST00000419533 DNAH5Q8TE73 4624 aa4.03□□□□□ -1.76
UBR4-206ENST00000419533 STARD9Q9P2P6 4700 aa4.02□□□□□ -1.77
UBR4-206ENST00000419533 DYNC1H1Q14204 4646 aaKnown RBP4.01□□□□□ -1.77
UBR4-206ENST00000419533 KRTAP3-1Q9BYR8 98 aa4□□□□□ -1.77
UBR4-206ENST00000419533 DNAH17Q9UFH2 4485 aa3.99□□□□□ -1.77
UBR4-206ENST00000419533 KRTAP12-1P59990 96 aa3.98□□□□□ -1.77
UBR4-206ENST00000419533 BIRC6Q9NR09 4857 aa3.96□□□□□ -1.78
UBR4-206ENST00000419533 FAT2Q9NYQ8 4349 aa3.94□□□□□ -1.78
UBR4-206ENST00000419533 RYR2Q92736 4967 aa3.92□□□□□ -1.78
UBR4-206ENST00000419533 LRP1BQ9NZR2 4599 aa3.92□□□□□ -1.78
UBR4-206ENST00000419533 SACSQ9NZJ4 4579 aa3.9□□□□□ -1.78
UBR4-206ENST00000419533 SRRM2Q9UQ35 2752 aaKnown RBP3.9□□□□□ -1.79
UBR4-206ENST00000419533 KRTAP10-6P60371 365 aaPredicted RBP3.89□□□□□ -1.79
UBR4-206ENST00000419533 DNAH7Q8WXX0 4024 aa3.88□□□□□ -1.79
UBR4-206ENST00000419533 KRTAP15-1Q3LI76 137 aa3.87□□□□□ -1.79
UBR4-206ENST00000419533 DNAH2Q9P225 4427 aa3.87□□□□□ -1.79
UBR4-206ENST00000419533 KRTAP17-1Q9BYP8 105 aa3.83□□□□□ -1.8
UBR4-206ENST00000419533 RYR3Q15413 4870 aa3.82□□□□□ -1.8
UBR4-206ENST00000419533 RYR1P21817 5038 aa3.81□□□□□ -1.8
UBR4-206ENST00000419533 DNAH8Q96JB1 4490 aa3.81□□□□□ -1.8
UBR4-206ENST00000419533 KMT2AQ03164 3969 aa3.79□□□□□ -1.8
UBR4-206ENST00000419533 KRTAP3-2Q9BYR7 98 aa3.76□□□□□ -1.81
UBR4-206ENST00000419533 KRTAP10-12P60413 245 aa3.76□□□□□ -1.81
UBR4-206ENST00000419533 KIAA1109Q2LD37 5005 aa3.75□□□□□ -1.81
UBR4-206ENST00000419533 KRTAP3-3Q9BYR6 98 aa3.75□□□□□ -1.81
UBR4-206ENST00000419533 FAT1Q14517 4588 aa3.75□□□□□ -1.81
UBR4-206ENST00000419533 APOBP04114 4563 aaKnown RBP3.74□□□□□ -1.81
UBR4-206ENST00000419533 MT1HP80294 61 aa3.69□□□□□ -1.82
UBR4-206ENST00000419533 HSPG2P98160 4391 aa3.68□□□□□ -1.82
UBR4-206ENST00000419533 HYDINQ4G0P3 5121 aa3.67□□□□□ -1.82
UBR4-206ENST00000419533 HERC2O95714 4834 aa3.67□□□□□ -1.82
UBR4-206ENST00000419533 KRTAP4-1Q9BYQ7 146 aa3.67□□□□□ -1.82
UBR4-206ENST00000419533 INE1O15225 51 aa3.66□□□□□ -1.82
UBR4-206ENST00000419533 CRCT1Q9UGL9 99 aa3.64□□□□□ -1.83
UBR4-206ENST00000419533 KMT2CQ8NEZ4 4911 aaKnown RBP3.63□□□□□ -1.83
UBR4-206ENST00000419533 CSMD3Q7Z407 3707 aa3.63□□□□□ -1.83
UBR4-206ENST00000419533 LYSTQ99698 3801 aa3.62□□□□□ -1.83
UBR4-206ENST00000419533 KRTAP12-3P60328 96 aa3.62□□□□□ -1.83
UBR4-206ENST00000419533 KRTAP23-1A1A580 65 aa3.61□□□□□ -1.83
UBR4-206ENST00000419533 VPS13BQ7Z7G8 4022 aa3.6□□□□□ -1.83
UBR4-206ENST00000419533 PKHD1L1Q86WI1 4243 aa3.59□□□□□ -1.83
UBR4-206ENST00000419533 FAT3Q8TDW7 4589 aa3.59□□□□□ -1.84
UBR4-206ENST00000419533 PKD1P98161 4303 aa3.58□□□□□ -1.84
UBR4-206ENST00000419533 HECTD4Q9Y4D8 3996 aa3.58□□□□□ -1.84
UBR4-206ENST00000419533 LCE3AQ5TA76 89 aa3.56□□□□□ -1.84
UBR4-206ENST00000419533 KRTAP8-1Q8IUC2 63 aa3.55□□□□□ -1.84
UBR4-206ENST00000419533 EPPK1P58107 5090 aaKnown RBP3.55□□□□□ -1.84
UBR4-206ENST00000419533 FRAS1Q86XX4 4008 aa3.54□□□□□ -1.84
UBR4-206ENST00000419533 HERC1Q15751 4861 aa3.54□□□□□ -1.84
UBR4-206ENST00000419533 LORP23490 312 aaPredicted RBP3.54□□□□□ -1.84
UBR4-206ENST00000419533 MYCBP2O75592 4640 aa3.53□□□□□ -1.84
UBR4-206ENST00000419533 MT2AP02795 61 aa3.53□□□□□ -1.84
UBR4-206ENST00000419533 PKHD1P08F94 4074 aa3.5□□□□□ -1.85
UBR4-206ENST00000419533 PCLOQ9Y6V0 5065 aa3.49□□□□□ -1.85
UBR4-206ENST00000419533 LRP1Q07954 4544 aaKnown RBP3.47□□□□□ -1.85
UBR4-206ENST00000419533 MT1FP04733 61 aa3.44□□□□□ -1.86
UBR4-206ENST00000419533 ABCA13Q86UQ4 5058 aa3.43□□□□□ -1.86
UBR4-206ENST00000419533 SPRR2GQ9BYE4 73 aa3.4□□□□□ -1.87
UBR4-206ENST00000419533 LCE2CQ5TA81 110 aa3.37□□□□□ -1.87
UBR4-206ENST00000419533 TNXBP22105 4242 aa3.36□□□□□ -1.87
UBR4-206ENST00000419533 KRTAP9-2Q9BYQ4 174 aa3.34□□□□□ -1.87
UBR4-206ENST00000419533 MUC17Q685J3 4493 aa3.34□□□□□ -1.88
UBR4-206ENST00000419533 KRTAP10-5P60370 271 aa3.33□□□□□ -1.88
UBR4-206ENST00000419533 LCE2DQ5TA82 110 aaPredicted RBP3.33□□□□□ -1.88
UBR4-206ENST00000419533 KRTAP9-8Q9BYQ0 159 aa3.31□□□□□ -1.88
UBR4-206ENST00000419533 SPRR2FQ96RM1 72 aa3.3□□□□□ -1.88
UBR4-206ENST00000419533 LCE2AQ5TA79 106 aaPredicted RBP3.29□□□□□ -1.88
UBR4-206ENST00000419533 KRTAP10-7P60409 375 aaPredicted RBP3.27□□□□□ -1.89
UBR4-206ENST00000419533 KRTAP19-8Q3LI54 63 aa3.27□□□□□ -1.89
UBR4-206ENST00000419533 KRTAP19-2Q3LHN2 52 aa3.26□□□□□ -1.89
UBR4-206ENST00000419533 LRP2P98164 4655 aa3.26□□□□□ -1.89
UBR4-206ENST00000419533 KRTAP9-6A0A140TA67 174 aa3.26□□□□□ -1.89
UBR4-206ENST00000419533 KRTAP9-3Q9BYQ3 159 aa3.25□□□□□ -1.89
UBR4-206ENST00000419533 KRTAP19-5Q3LI72 72 aa3.23□□□□□ -1.89
UBR4-206ENST00000419533 KRTAP19-4Q3LI73 84 aa3.22□□□□□ -1.89
UBR4-206ENST00000419533 KRTAP19-1Q8IUB9 90 aa3.22□□□□□ -1.89
UBR4-206ENST00000419533 LPAP08519 4548 aa3.21□□□□□ -1.9
UBR4-206ENST00000419533 HMCN2Q8NDA2 5059 aa3.2□□□□□ -1.9
UBR4-206ENST00000419533 LCE3CQ5T5A8 94 aa3.16□□□□□ -1.9
UBR4-206ENST00000419533 RNF213Q63HN8 5207 aa3.15□□□□□ -1.9
UBR4-206ENST00000419533 SPRR2EP22531 72 aa3.14□□□□□ -1.91
UBR4-206ENST00000419533 SPRR2BP35325 72 aa3.14□□□□□ -1.91
UBR4-206ENST00000419533 SPRR2AP35326 72 aa3.14□□□□□ -1.91
UBR4-206ENST00000419533 MT1BP07438 61 aa3.14□□□□□ -1.91
UBR4-206ENST00000419533 LCE2BO14633 110 aa3.11□□□□□ -1.91
UBR4-206ENST00000419533 KRTAP19-6Q3LI70 58 aa3.11□□□□□ -1.91
UBR4-206ENST00000419533 FLGP20930 4061 aaPredicted RBP3.09□□□□□ -1.91
UBR4-206ENST00000419533 FAT4Q6V0I7 4981 aa3.09□□□□□ -1.91
UBR4-206ENST00000419533 MT1XP80297 61 aa3.05□□□□□ -1.92
UBR4-206ENST00000419533 SPRR2DP22532 72 aa3.05□□□□□ -1.92
UBR4-206ENST00000419533 SPRR5A0A1B0GTR4 108 aa3.03□□□□□ -1.92
UBR4-206ENST00000419533 UBR4Q5T4S7 5183 aa3.01□□□□□ -1.93
UBR4-206ENST00000419533 KRTAP9-7A8MTY7 169 aa2.98□□□□□ -1.93
UBR4-206ENST00000419533 MT1GP13640 62 aa2.96□□□□□ -1.94
UBR4-206ENST00000419533 KRTAP12-4P60329 112 aa2.96□□□□□ -1.94
UBR4-206ENST00000419533 KRTAP6-3Q3LI67 103 aa2.93□□□□□ -1.94
UBR4-206ENST00000419533 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms