RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 MYCBP2O75592 4640 aa5.1□□□□□ -1.59
CD44-206ENST00000415148 K7ERS5 55 aa5.1□□□□□ -1.59
CD44-206ENST00000415148 H3BS24 57 aa5.09□□□□□ -1.59
CD44-206ENST00000415148 KRTAP10-8P60410 259 aa5.08□□□□□ -1.6
CD44-206ENST00000415148 TNXBP22105 4242 aa5.07□□□□□ -1.6
CD44-206ENST00000415148 J3QL48 77 aa5.07□□□□□ -1.6
CD44-206ENST00000415148 RPL37P61927 97 aaKnown RBP5.06□□□□□ -1.6
CD44-206ENST00000415148 KRTAP13-4Q3LI77 160 aa5.05□□□□□ -1.6
CD44-206ENST00000415148 EPPK1P58107 5090 aaKnown RBP5.05□□□□□ -1.6
CD44-206ENST00000415148 KRTAP3-3Q9BYR6 98 aa5.04□□□□□ -1.6
CD44-206ENST00000415148 DMBT1Q9UGM3 2413 aaPredicted RBP5.04□□□□□ -1.6
CD44-206ENST00000415148 KRTAP10-6P60371 365 aaPredicted RBP5.02□□□□□ -1.61
CD44-206ENST00000415148 ROMO1P60602 79 aa5.01□□□□□ -1.61
CD44-206ENST00000415148 A0A0D9SG42 100 aa5□□□□□ -1.61
CD44-206ENST00000415148 XP32Q5T750 250 aa4.99□□□□□ -1.61
CD44-206ENST00000415148 S4R3F8 94 aa4.99□□□□□ -1.61
CD44-206ENST00000415148 LPAP08519 4548 aa4.99□□□□□ -1.61
CD44-206ENST00000415148 KRTAP3-2Q9BYR7 98 aa4.99□□□□□ -1.61
CD44-206ENST00000415148 Q5VSD8 79 aa4.96□□□□□ -1.62
CD44-206ENST00000415148 P0C880 135 aa4.96□□□□□ -1.62
CD44-206ENST00000415148 TPRXLQ17RH7 258 aa4.95□□□□□ -1.62
CD44-206ENST00000415148 RYR1P21817 5038 aa4.94□□□□□ -1.62
CD44-206ENST00000415148 KIAA1109Q2LD37 5005 aa4.94□□□□□ -1.62
CD44-206ENST00000415148 C10orf95Q9H7T3 257 aa4.93□□□□□ -1.62
CD44-206ENST00000415148 BIRC6Q9NR09 4857 aa4.88□□□□□ -1.63
CD44-206ENST00000415148 KRTAP12-2P59991 146 aa4.87□□□□□ -1.63
CD44-206ENST00000415148 KRTAP17-1Q9BYP8 105 aa4.86□□□□□ -1.63
CD44-206ENST00000415148 LRP2P98164 4655 aa4.86□□□□□ -1.63
CD44-206ENST00000415148 MT1HL1P0DM35 61 aa4.85□□□□□ -1.63
CD44-206ENST00000415148 M0QZ58 72 aa4.82□□□□□ -1.64
CD44-206ENST00000415148 HERC2O95714 4834 aa4.8□□□□□ -1.64
CD44-206ENST00000415148 SPINT4Q6UDR6 99 aa4.8□□□□□ -1.64
CD44-206ENST00000415148 KRTAP12-1P59990 96 aa4.78□□□□□ -1.64
CD44-206ENST00000415148 KRTAP15-1Q3LI76 137 aa4.75□□□□□ -1.65
CD44-206ENST00000415148 ABCA13Q86UQ4 5058 aa4.74□□□□□ -1.65
CD44-206ENST00000415148 KRTAP4-5Q9BYR2 181 aa4.73□□□□□ -1.65
CD44-206ENST00000415148 NDUFAF8A1L188 74 aa4.69□□□□□ -1.66
CD44-206ENST00000415148 PCLOQ9Y6V0 5065 aa4.67□□□□□ -1.66
CD44-206ENST00000415148 SEC61BP60468 96 aaKnown RBP4.64□□□□□ -1.67
CD44-206ENST00000415148 R4GN34 69 aa4.63□□□□□ -1.67
CD44-206ENST00000415148 MUC17Q685J3 4493 aa4.63□□□□□ -1.67
CD44-206ENST00000415148 LORP23490 312 aaPredicted RBP4.61□□□□□ -1.67
CD44-206ENST00000415148 LCE2DQ5TA82 110 aaPredicted RBP4.61□□□□□ -1.67
CD44-206ENST00000415148 A0A0A0MQY5 61 aa4.53□□□□□ -1.68
CD44-206ENST00000415148 KRTAP4-1Q9BYQ7 146 aa4.5□□□□□ -1.69
CD44-206ENST00000415148 HERC1Q15751 4861 aa4.5□□□□□ -1.69
CD44-206ENST00000415148 KRTAP19-2Q3LHN2 52 aa4.48□□□□□ -1.69
CD44-206ENST00000415148 MUC2Q02817 5179 aa4.48□□□□□ -1.69
CD44-206ENST00000415148 PP632Q6XCG6 107 aa4.44□□□□□ -1.7
CD44-206ENST00000415148 PLAC4Q8WY50 150 aa4.42□□□□□ -1.7
CD44-206ENST00000415148 HMCN2Q8NDA2 5059 aa4.42□□□□□ -1.7
CD44-206ENST00000415148 CAMK2N1Q7Z7J9 78 aa4.39□□□□□ -1.71
CD44-206ENST00000415148 FLGP20930 4061 aaPredicted RBP4.34□□□□□ -1.71
CD44-206ENST00000415148 KRTAP23-1A1A580 65 aa4.32□□□□□ -1.72
CD44-206ENST00000415148 TNP1P09430 55 aa4.27□□□□□ -1.73
CD44-206ENST00000415148 UBR4Q5T4S7 5183 aa4.27□□□□□ -1.73
CD44-206ENST00000415148 FAT4Q6V0I7 4981 aa4.25□□□□□ -1.73
CD44-206ENST00000415148 LUZP6Q538Z0 58 aa4.23□□□□□ -1.73
CD44-206ENST00000415148 SPRR2GQ9BYE4 73 aa4.19□□□□□ -1.74
CD44-206ENST00000415148 LCE2CQ5TA81 110 aa4.17□□□□□ -1.74
CD44-206ENST00000415148 RNF213Q63HN8 5207 aa4.15□□□□□ -1.74
CD44-206ENST00000415148 SPRR5A0A1B0GTR4 108 aa4.14□□□□□ -1.75
CD44-206ENST00000415148 KRTAP19-1Q8IUB9 90 aa4.11□□□□□ -1.75
CD44-206ENST00000415148 LCE2AQ5TA79 106 aaPredicted RBP4.06□□□□□ -1.76
CD44-206ENST00000415148 M0R2T5 61 aa4.05□□□□□ -1.76
CD44-206ENST00000415148 MT1HP80294 61 aa4.05□□□□□ -1.76
CD44-206ENST00000415148 LCE2BO14633 110 aa4.04□□□□□ -1.76
CD44-206ENST00000415148 LCE3AQ5TA76 89 aa4.02□□□□□ -1.77
CD44-206ENST00000415148 MT2AP02795 61 aa4□□□□□ -1.77
CD44-206ENST00000415148 KRTAP10-10P60014 251 aa4□□□□□ -1.77
CD44-206ENST00000415148 KRTAP19-8Q3LI54 63 aa4□□□□□ -1.77
CD44-206ENST00000415148 MT1FP04733 61 aa3.99□□□□□ -1.77
CD44-206ENST00000415148 KRTAP9-8Q9BYQ0 159 aa3.98□□□□□ -1.77
CD44-206ENST00000415148 KRTAP8-1Q8IUC2 63 aa3.95□□□□□ -1.78
CD44-206ENST00000415148 MT1BP07438 61 aa3.9□□□□□ -1.79
CD44-206ENST00000415148 KRTAP10-5P60370 271 aa3.9□□□□□ -1.79
CD44-206ENST00000415148 MT1XP80297 61 aa3.88□□□□□ -1.79
CD44-206ENST00000415148 KRTAP10-12P60413 245 aa3.83□□□□□ -1.8
CD44-206ENST00000415148 KRTAP12-3P60328 96 aa3.82□□□□□ -1.8
CD44-206ENST00000415148 KRTAP9-3Q9BYQ3 159 aa3.81□□□□□ -1.8
CD44-206ENST00000415148 KRTAP10-7P60409 375 aaPredicted RBP3.78□□□□□ -1.8
CD44-206ENST00000415148 PRO2289Q9P1D8 64 aa3.78□□□□□ -1.8
CD44-206ENST00000415148 KMT2DO14686 5537 aa3.76□□□□□ -1.81
CD44-206ENST00000415148 USH2AO75445 5202 aa3.72□□□□□ -1.81
CD44-206ENST00000415148 INE1O15225 51 aa3.72□□□□□ -1.81
CD44-206ENST00000415148 KRTAP9-2Q9BYQ4 174 aa3.69□□□□□ -1.82
CD44-206ENST00000415148 KRTAP19-5Q3LI72 72 aa3.62□□□□□ -1.83
CD44-206ENST00000415148 LCE3CQ5T5A8 94 aa3.62□□□□□ -1.83
CD44-206ENST00000415148 KRTAP9-6A0A140TA67 174 aa3.6□□□□□ -1.83
CD44-206ENST00000415148 KRTAP4-8A0A0G2JLE6 195 aa3.56□□□□□ -1.84
CD44-206ENST00000415148 KRTAP9-6A8MVA2 160 aa3.56□□□□□ -1.84
CD44-206ENST00000415148 KRTAP4-8Q9BYQ9 185 aa3.56□□□□□ -1.84
CD44-206ENST00000415148 KRTAP19-4Q3LI73 84 aa3.55□□□□□ -1.84
CD44-206ENST00000415148 FSIP2Q5CZC0 6907 aa3.54□□□□□ -1.84
CD44-206ENST00000415148 KRTAP4-7Q9BYR0 210 aa3.51□□□□□ -1.85
CD44-206ENST00000415148 KRTAP19-7Q3SYF9 63 aa3.46□□□□□ -1.86
CD44-206ENST00000415148 CRCT1Q9UGL9 99 aa3.46□□□□□ -1.86
CD44-206ENST00000415148 SSPOA2VEC9 5147 aa3.44□□□□□ -1.86
CD44-206ENST00000415148 KRTAP2-3P0C7H8 128 aa3.41□□□□□ -1.86
CD44-206ENST00000415148 KRTAP2-4Q9BYR9 128 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 106.9 ms