RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 MT1HL1P0DM35 61 aa5.86□□□□□ -1.47
PTPRF-205ENST00000414879 CSMD3Q7Z407 3707 aa5.86□□□□□ -1.47
PTPRF-205ENST00000414879 HECTD4Q9Y4D8 3996 aa5.84□□□□□ -1.47
PTPRF-205ENST00000414879 KRTAP10-4P60372 401 aaPredicted RBP5.83□□□□□ -1.48
PTPRF-205ENST00000414879 LYSTQ99698 3801 aa5.82□□□□□ -1.48
PTPRF-205ENST00000414879 DNAH11Q96DT5 4516 aa5.81□□□□□ -1.48
PTPRF-205ENST00000414879 KMT2AQ03164 3969 aa5.8□□□□□ -1.48
PTPRF-205ENST00000414879 KRTAP3-1Q9BYR8 98 aa5.79□□□□□ -1.48
PTPRF-205ENST00000414879 FRAS1Q86XX4 4008 aa5.77□□□□□ -1.49
PTPRF-205ENST00000414879 DNAH5Q8TE73 4624 aa5.76□□□□□ -1.49
PTPRF-205ENST00000414879 NDUFAF8A1L188 74 aa5.76□□□□□ -1.49
PTPRF-205ENST00000414879 C10orf95Q9H7T3 257 aa5.73□□□□□ -1.49
PTPRF-205ENST00000414879 KRTAP13-4Q3LI77 160 aa5.69□□□□□ -1.5
PTPRF-205ENST00000414879 FAT2Q9NYQ8 4349 aa5.69□□□□□ -1.5
PTPRF-205ENST00000414879 PKD1P98161 4303 aa5.66□□□□□ -1.5
PTPRF-205ENST00000414879 DYNC1H1Q14204 4646 aaKnown RBP5.66□□□□□ -1.5
PTPRF-205ENST00000414879 KRTAP12-1P59990 96 aa5.66□□□□□ -1.5
PTPRF-205ENST00000414879 SRRM2Q9UQ35 2752 aaKnown RBP5.66□□□□□ -1.5
PTPRF-205ENST00000414879 SACSQ9NZJ4 4579 aa5.64□□□□□ -1.51
PTPRF-205ENST00000414879 KRTAP12-2P59991 146 aa5.64□□□□□ -1.51
PTPRF-205ENST00000414879 KRTAP10-6P60371 365 aaPredicted RBP5.61□□□□□ -1.51
PTPRF-205ENST00000414879 LRP1BQ9NZR2 4599 aa5.6□□□□□ -1.51
PTPRF-205ENST00000414879 HYDINQ4G0P3 5121 aa5.6□□□□□ -1.51
PTPRF-205ENST00000414879 RYR2Q92736 4967 aa5.57□□□□□ -1.52
PTPRF-205ENST00000414879 PKHD1L1Q86WI1 4243 aa5.56□□□□□ -1.52
PTPRF-205ENST00000414879 VPS13BQ7Z7G8 4022 aa5.52□□□□□ -1.53
PTPRF-205ENST00000414879 KRTAP4-5Q9BYR2 181 aa5.51□□□□□ -1.53
PTPRF-205ENST00000414879 APOBP04114 4563 aaKnown RBP5.51□□□□□ -1.53
PTPRF-205ENST00000414879 KRTAP3-3Q9BYR6 98 aa5.49□□□□□ -1.53
PTPRF-205ENST00000414879 KRTAP3-2Q9BYR7 98 aa5.45□□□□□ -1.54
PTPRF-205ENST00000414879 PKHD1P08F94 4074 aa5.36□□□□□ -1.55
PTPRF-205ENST00000414879 KRTAP23-1A1A580 65 aa5.35□□□□□ -1.55
PTPRF-205ENST00000414879 RYR1P21817 5038 aa5.34□□□□□ -1.56
PTPRF-205ENST00000414879 FAT1Q14517 4588 aa5.32□□□□□ -1.56
PTPRF-205ENST00000414879 HSPG2P98160 4391 aa5.31□□□□□ -1.56
PTPRF-205ENST00000414879 KRTAP15-1Q3LI76 137 aa5.26□□□□□ -1.57
PTPRF-205ENST00000414879 TNXBP22105 4242 aa5.24□□□□□ -1.57
PTPRF-205ENST00000414879 KRTAP10-12P60413 245 aa5.23□□□□□ -1.57
PTPRF-205ENST00000414879 FAT3Q8TDW7 4589 aa5.23□□□□□ -1.57
PTPRF-205ENST00000414879 KMT2CQ8NEZ4 4911 aaKnown RBP5.23□□□□□ -1.57
PTPRF-205ENST00000414879 KRTAP17-1Q9BYP8 105 aa5.23□□□□□ -1.57
PTPRF-205ENST00000414879 RYR3Q15413 4870 aa5.16□□□□□ -1.58
PTPRF-205ENST00000414879 KIAA1109Q2LD37 5005 aa5.06□□□□□ -1.6
PTPRF-205ENST00000414879 KRTAP12-3P60328 96 aa5.06□□□□□ -1.6
PTPRF-205ENST00000414879 KRTAP4-1Q9BYQ7 146 aa5.05□□□□□ -1.6
PTPRF-205ENST00000414879 LRP1Q07954 4544 aaKnown RBP5.05□□□□□ -1.6
PTPRF-205ENST00000414879 BIRC6Q9NR09 4857 aa5.05□□□□□ -1.6
PTPRF-205ENST00000414879 MT1HP80294 61 aa5.04□□□□□ -1.6
PTPRF-205ENST00000414879 LORP23490 312 aaPredicted RBP5.02□□□□□ -1.61
PTPRF-205ENST00000414879 SPRR2GQ9BYE4 73 aa5.01□□□□□ -1.61
PTPRF-205ENST00000414879 MYCBP2O75592 4640 aa5□□□□□ -1.61
PTPRF-205ENST00000414879 EPPK1P58107 5090 aaKnown RBP4.99□□□□□ -1.61
PTPRF-205ENST00000414879 MUC17Q685J3 4493 aa4.97□□□□□ -1.61
PTPRF-205ENST00000414879 MT2AP02795 61 aa4.95□□□□□ -1.62
PTPRF-205ENST00000414879 LCE3AQ5TA76 89 aa4.94□□□□□ -1.62
PTPRF-205ENST00000414879 HERC2O95714 4834 aa4.94□□□□□ -1.62
PTPRF-205ENST00000414879 INE1O15225 51 aa4.92□□□□□ -1.62
PTPRF-205ENST00000414879 KRTAP19-4Q3LI73 84 aa4.88□□□□□ -1.63
PTPRF-205ENST00000414879 KRTAP8-1Q8IUC2 63 aa4.87□□□□□ -1.63
PTPRF-205ENST00000414879 MT1FP04733 61 aa4.81□□□□□ -1.64
PTPRF-205ENST00000414879 ABCA13Q86UQ4 5058 aa4.8□□□□□ -1.64
PTPRF-205ENST00000414879 KRTAP19-8Q3LI54 63 aa4.74□□□□□ -1.65
PTPRF-205ENST00000414879 LPAP08519 4548 aa4.72□□□□□ -1.65
PTPRF-205ENST00000414879 KRTAP19-2Q3LHN2 52 aa4.71□□□□□ -1.66
PTPRF-205ENST00000414879 LRP2P98164 4655 aa4.7□□□□□ -1.66
PTPRF-205ENST00000414879 HERC1Q15751 4861 aa4.69□□□□□ -1.66
PTPRF-205ENST00000414879 CRCT1Q9UGL9 99 aa4.65□□□□□ -1.66
PTPRF-205ENST00000414879 PCLOQ9Y6V0 5065 aa4.64□□□□□ -1.67
PTPRF-205ENST00000414879 KRTAP19-1Q8IUB9 90 aa4.61□□□□□ -1.67
PTPRF-205ENST00000414879 LCE2CQ5TA81 110 aa4.6□□□□□ -1.67
PTPRF-205ENST00000414879 FLGP20930 4061 aaPredicted RBP4.56□□□□□ -1.68
PTPRF-205ENST00000414879 KRTAP10-5P60370 271 aa4.55□□□□□ -1.68
PTPRF-205ENST00000414879 HMCN2Q8NDA2 5059 aa4.54□□□□□ -1.68
PTPRF-205ENST00000414879 KRTAP9-8Q9BYQ0 159 aa4.53□□□□□ -1.68
PTPRF-205ENST00000414879 KRTAP19-5Q3LI72 72 aa4.51□□□□□ -1.69
PTPRF-205ENST00000414879 SPRR2FQ96RM1 72 aa4.49□□□□□ -1.69
PTPRF-205ENST00000414879 KRTAP10-7P60409 375 aaPredicted RBP4.48□□□□□ -1.69
PTPRF-205ENST00000414879 LCE3CQ5T5A8 94 aa4.48□□□□□ -1.69
PTPRF-205ENST00000414879 MT1BP07438 61 aa4.46□□□□□ -1.7
PTPRF-205ENST00000414879 KRTAP9-3Q9BYQ3 159 aa4.44□□□□□ -1.7
PTPRF-205ENST00000414879 MT1XP80297 61 aa4.44□□□□□ -1.7
PTPRF-205ENST00000414879 RNF213Q63HN8 5207 aa4.33□□□□□ -1.72
PTPRF-205ENST00000414879 MT1GP13640 62 aa4.27□□□□□ -1.73
PTPRF-205ENST00000414879 SPRR2EP22531 72 aa4.25□□□□□ -1.73
PTPRF-205ENST00000414879 SPRR2BP35325 72 aa4.25□□□□□ -1.73
PTPRF-205ENST00000414879 SPRR2AP35326 72 aa4.25□□□□□ -1.73
PTPRF-205ENST00000414879 LCE2AQ5TA79 106 aaPredicted RBP4.22□□□□□ -1.73
PTPRF-205ENST00000414879 FAT4Q6V0I7 4981 aa4.22□□□□□ -1.73
PTPRF-205ENST00000414879 KRTAP9-2Q9BYQ4 174 aa4.18□□□□□ -1.74
PTPRF-205ENST00000414879 SPRR5A0A1B0GTR4 108 aa4.17□□□□□ -1.74
PTPRF-205ENST00000414879 LCE2BO14633 110 aa4.16□□□□□ -1.74
PTPRF-205ENST00000414879 KRTAP19-6Q3LI70 58 aa4.15□□□□□ -1.75
PTPRF-205ENST00000414879 SPRR2DP22532 72 aa4.14□□□□□ -1.75
PTPRF-205ENST00000414879 LCE2DQ5TA82 110 aaPredicted RBP4.13□□□□□ -1.75
PTPRF-205ENST00000414879 UBR4Q5T4S7 5183 aa4.13□□□□□ -1.75
PTPRF-205ENST00000414879 MUC2Q02817 5179 aa4.11□□□□□ -1.75
PTPRF-205ENST00000414879 KRTAP19-3Q7Z4W3 81 aa4.09□□□□□ -1.76
PTPRF-205ENST00000414879 KRTAP9-6A0A140TA67 174 aa4.08□□□□□ -1.76
PTPRF-205ENST00000414879 KRTAP12-4P60329 112 aa4.07□□□□□ -1.76
PTPRF-205ENST00000414879 KRTAP4-8A0A0G2JLE6 195 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 132.3 ms