RNA–Protein interactions for RNA: ENST00000412272.6

HERC4-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 4,211 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-205ENST00000412272 FBN3Q75N90 2809 aa2.49□□□□□ -2.01
HERC4-205ENST00000412272 LRRK2Q5S007 2527 aa2.49□□□□□ -2.01
HERC4-205ENST00000412272 POLQO75417 2590 aa2.49□□□□□ -2.01
HERC4-205ENST00000412272 PKHD1L1Q86WI1 4243 aa2.48□□□□□ -2.01
HERC4-205ENST00000412272 KRTAP17-1Q9BYP8 105 aa2.48□□□□□ -2.01
HERC4-205ENST00000412272 M0QZ58 72 aa2.48□□□□□ -2.01
HERC4-205ENST00000412272 PP632Q6XCG6 107 aa2.47□□□□□ -2.01
HERC4-205ENST00000412272 SMR3AQ99954 134 aa2.46□□□□□ -2.02
HERC4-205ENST00000412272 PKD1P98161 4303 aa2.45□□□□□ -2.02
HERC4-205ENST00000412272 ATRQ13535 2644 aa2.45□□□□□ -2.02
HERC4-205ENST00000412272 TENM3Q9P273 2699 aa2.44□□□□□ -2.02
HERC4-205ENST00000412272 VPS13BQ7Z7G8 4022 aa2.43□□□□□ -2.02
HERC4-205ENST00000412272 ACANP16112 2415 aa2.42□□□□□ -2.02
HERC4-205ENST00000412272 PLECQ15149 4684 aaKnown RBP2.41□□□□□ -2.02
HERC4-205ENST00000412272 J3QKU1 62 aa2.41□□□□□ -2.02
HERC4-205ENST00000412272 NOTCH1P46531 2555 aa2.41□□□□□ -2.02
HERC4-205ENST00000412272 DNAH5Q8TE73 4624 aa2.4□□□□□ -2.03
HERC4-205ENST00000412272 STAB2Q8WWQ8 2551 aa2.4□□□□□ -2.03
HERC4-205ENST00000412272 TNXBP22105 4242 aa2.39□□□□□ -2.03
HERC4-205ENST00000412272 FLNCQ14315 2725 aa2.38□□□□□ -2.03
HERC4-205ENST00000412272 FLNAP21333 2647 aaKnown RBP2.37□□□□□ -2.03
HERC4-205ENST00000412272 ABCA13Q86UQ4 5058 aa2.36□□□□□ -2.03
HERC4-205ENST00000412272 HSPG2P98160 4391 aa2.36□□□□□ -2.03
HERC4-205ENST00000412272 STARD9Q9P2P6 4700 aa2.35□□□□□ -2.03
HERC4-205ENST00000412272 IGSF10Q6WRI0 2623 aa2.35□□□□□ -2.03
HERC4-205ENST00000412272 TENM1Q9UKZ4 2725 aa2.34□□□□□ -2.03
HERC4-205ENST00000412272 LRP1Q07954 4544 aaKnown RBP2.34□□□□□ -2.03
HERC4-205ENST00000412272 C9orf92A6NGG3 77 aa2.34□□□□□ -2.04
HERC4-205ENST00000412272 APOBP04114 4563 aaKnown RBP2.33□□□□□ -2.04
HERC4-205ENST00000412272 LRP1BQ9NZR2 4599 aa2.33□□□□□ -2.04
HERC4-205ENST00000412272 A0A1B0GVY2 172 aa2.32□□□□□ -2.04
HERC4-205ENST00000412272 STAB1Q9NY15 2570 aa2.32□□□□□ -2.04
HERC4-205ENST00000412272 KRTAP10-2P60368 255 aa2.31□□□□□ -2.04
HERC4-205ENST00000412272 RYR1P21817 5038 aa2.3□□□□□ -2.04
HERC4-205ENST00000412272 NSD1Q96L73 2696 aaPredicted RBP2.3□□□□□ -2.04
HERC4-205ENST00000412272 KRTAP10-1P60331 282 aa2.29□□□□□ -2.04
HERC4-205ENST00000412272 LORP23490 312 aaPredicted RBP2.29□□□□□ -2.04
HERC4-205ENST00000412272 KRTAP21-3Q3LHN1 58 aa2.27□□□□□ -2.05
HERC4-205ENST00000412272 Q5VSD8 79 aa2.27□□□□□ -2.05
HERC4-205ENST00000412272 LCE2BO14633 110 aa2.27□□□□□ -2.05
HERC4-205ENST00000412272 LCE2AQ5TA79 106 aaPredicted RBP2.26□□□□□ -2.05
HERC4-205ENST00000412272 KRTAP19-4Q3LI73 84 aa2.26□□□□□ -2.05
HERC4-205ENST00000412272 DYNC1H1Q14204 4646 aaKnown RBP2.26□□□□□ -2.05
HERC4-205ENST00000412272 KRTAP10-4P60372 401 aaPredicted RBP2.25□□□□□ -2.05
HERC4-205ENST00000412272 FLGP20930 4061 aaPredicted RBP2.25□□□□□ -2.05
HERC4-205ENST00000412272 HERC2O95714 4834 aa2.24□□□□□ -2.05
HERC4-205ENST00000412272 HERC1Q15751 4861 aa2.22□□□□□ -2.05
HERC4-205ENST00000412272 FAT1Q14517 4588 aa2.21□□□□□ -2.06
HERC4-205ENST00000412272 MGAM2Q2M2H8 2515 aa2.2□□□□□ -2.06
HERC4-205ENST00000412272 KRTAP10-10P60014 251 aa2.19□□□□□ -2.06
HERC4-205ENST00000412272 TNP1P09430 55 aa2.16□□□□□ -2.06
HERC4-205ENST00000412272 KIAA1109Q2LD37 5005 aa2.16□□□□□ -2.06
HERC4-205ENST00000412272 LOC100996750A0A140TA64 210 aa2.15□□□□□ -2.07
HERC4-205ENST00000412272 KRTAP4-6Q9BYQ5 205 aa2.15□□□□□ -2.07
HERC4-205ENST00000412272 BIRC6Q9NR09 4857 aa2.14□□□□□ -2.07
HERC4-205ENST00000412272 UBR4Q5T4S7 5183 aa2.11□□□□□ -2.07
HERC4-205ENST00000412272 LCE2CQ5TA81 110 aa2.09□□□□□ -2.08
HERC4-205ENST00000412272 KRTAP2-2Q9BYT5 123 aa2.08□□□□□ -2.08
HERC4-205ENST00000412272 HMCN2Q8NDA2 5059 aa2.04□□□□□ -2.08
HERC4-205ENST00000412272 KRTAP8-1Q8IUC2 63 aa2.04□□□□□ -2.08
HERC4-205ENST00000412272 LCE3BQ5TA77 95 aa2.03□□□□□ -2.08
HERC4-205ENST00000412272 MUC2Q02817 5179 aa2.03□□□□□ -2.08
HERC4-205ENST00000412272 KRTAP10-12P60413 245 aa2.02□□□□□ -2.09
HERC4-205ENST00000412272 MUC17Q685J3 4493 aa2.02□□□□□ -2.09
HERC4-205ENST00000412272 KRTAP19-2Q3LHN2 52 aa2.02□□□□□ -2.09
HERC4-205ENST00000412272 SMR3BP02814 79 aaPredicted RBP2□□□□□ -2.09
HERC4-205ENST00000412272 LPAP08519 4548 aa2□□□□□ -2.09
HERC4-205ENST00000412272 RNF213Q63HN8 5207 aa1.99□□□□□ -2.09
HERC4-205ENST00000412272 LCE3AQ5TA76 89 aa1.98□□□□□ -2.09
HERC4-205ENST00000412272 KRTAP4-8Q9BYQ9 185 aa1.98□□□□□ -2.09
HERC4-205ENST00000412272 MT1HL1P0DM35 61 aa1.96□□□□□ -2.09
HERC4-205ENST00000412272 KRTAP10-5P60370 271 aa1.96□□□□□ -2.1
HERC4-205ENST00000412272 KRTAP6-3Q3LI67 103 aa1.95□□□□□ -2.1
HERC4-205ENST00000412272 SPRR2GQ9BYE4 73 aa1.95□□□□□ -2.1
HERC4-205ENST00000412272 LCE1AQ5T7P2 110 aa1.94□□□□□ -2.1
HERC4-205ENST00000412272 FAT4Q6V0I7 4981 aa1.93□□□□□ -2.1
HERC4-205ENST00000412272 KRTAP2-3P0C7H8 128 aa1.93□□□□□ -2.1
HERC4-205ENST00000412272 KRTAP2-4Q9BYR9 128 aa1.93□□□□□ -2.1
HERC4-205ENST00000412272 KRTAP2-1Q9BYU5 128 aa1.93□□□□□ -2.1
HERC4-205ENST00000412272 KRTAP12-3P60328 96 aa1.89□□□□□ -2.11
HERC4-205ENST00000412272 LRP2P98164 4655 aa1.88□□□□□ -2.11
HERC4-205ENST00000412272 KRTAP9-6A0A140TA67 174 aa1.88□□□□□ -2.11
HERC4-205ENST00000412272 KRTAP4-1Q9BYQ7 146 aa1.88□□□□□ -2.11
HERC4-205ENST00000412272 LCE1DQ5T752 114 aa1.87□□□□□ -2.11
HERC4-205ENST00000412272 KRTAP9-2Q9BYQ4 174 aa1.87□□□□□ -2.11
HERC4-205ENST00000412272 LCE1EQ5T753 118 aa1.87□□□□□ -2.11
HERC4-205ENST00000412272 KRTAP4-12Q9BQ66 201 aa1.86□□□□□ -2.11
HERC4-205ENST00000412272 KRTAP19-1Q8IUB9 90 aa1.86□□□□□ -2.11
HERC4-205ENST00000412272 KRTAP4-8A0A0G2JLE6 195 aa1.84□□□□□ -2.12
HERC4-205ENST00000412272 LCE3CQ5T5A8 94 aa1.84□□□□□ -2.12
HERC4-205ENST00000412272 KRTAP10-7P60409 375 aaPredicted RBP1.83□□□□□ -2.12
HERC4-205ENST00000412272 KRTAP19-8Q3LI54 63 aa1.83□□□□□ -2.12
HERC4-205ENST00000412272 KRTAP9-6A8MVA2 160 aa1.82□□□□□ -2.12
HERC4-205ENST00000412272 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.81□□□□□ -2.12
HERC4-205ENST00000412272 LCE5AQ5TCM9 118 aa1.81□□□□□ -2.12
HERC4-205ENST00000412272 KRTAP12-4P60329 112 aa1.8□□□□□ -2.12
HERC4-205ENST00000412272 KRTAP4-7Q9BYR0 210 aa1.79□□□□□ -2.12
HERC4-205ENST00000412272 LCE1FQ5T754 118 aa1.78□□□□□ -2.12
HERC4-205ENST00000412272 MT1XP80297 61 aa1.78□□□□□ -2.12
HERC4-205ENST00000412272 KRTAP19-5Q3LI72 72 aa1.77□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms