RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 TGP01266 2768 aa3.06□□□□□ -1.92
CCDC88A-203ENST00000412148 KRTAP25-1Q3LHN0 102 aa3.05□□□□□ -1.92
CCDC88A-203ENST00000412148 PKHD1L1Q86WI1 4243 aa3.04□□□□□ -1.92
CCDC88A-203ENST00000412148 VPS13BQ7Z7G8 4022 aa3.03□□□□□ -1.92
CCDC88A-203ENST00000412148 KRTAP9-9Q9BYP9 154 aa3.02□□□□□ -1.93
CCDC88A-203ENST00000412148 KRTAP9-4Q9BYQ2 154 aa3.02□□□□□ -1.93
CCDC88A-203ENST00000412148 A0A1B0GVY2 172 aa3.02□□□□□ -1.93
CCDC88A-203ENST00000412148 K7ERS5 55 aa3.02□□□□□ -1.93
CCDC88A-203ENST00000412148 KRTAP21-3Q3LHN1 58 aa3.02□□□□□ -1.93
CCDC88A-203ENST00000412148 PKHD1P08F94 4074 aa3.01□□□□□ -1.93
CCDC88A-203ENST00000412148 KRTAP4-8A0A0G2JLE6 195 aa3.01□□□□□ -1.93
CCDC88A-203ENST00000412148 KRTAP19-1Q8IUB9 90 aa3□□□□□ -1.93
CCDC88A-203ENST00000412148 APOBP04114 4563 aaKnown RBP2.98□□□□□ -1.93
CCDC88A-203ENST00000412148 C9orf92A6NGG3 77 aa2.98□□□□□ -1.93
CCDC88A-203ENST00000412148 KRTAP10-6P60371 365 aaPredicted RBP2.97□□□□□ -1.93
CCDC88A-203ENST00000412148 ROMO1P60602 79 aa2.96□□□□□ -1.94
CCDC88A-203ENST00000412148 RPL37P61927 97 aaKnown RBP2.96□□□□□ -1.94
CCDC88A-203ENST00000412148 KRTAP10-8P60410 259 aa2.94□□□□□ -1.94
CCDC88A-203ENST00000412148 HYDINQ4G0P3 5121 aa2.94□□□□□ -1.94
CCDC88A-203ENST00000412148 LUZP6Q538Z0 58 aa2.93□□□□□ -1.94
CCDC88A-203ENST00000412148 TNXBP22105 4242 aa2.92□□□□□ -1.94
CCDC88A-203ENST00000412148 LCE1DQ5T752 114 aa2.92□□□□□ -1.94
CCDC88A-203ENST00000412148 KRTAP4-7Q9BYR0 210 aa2.91□□□□□ -1.94
CCDC88A-203ENST00000412148 S4R3F8 94 aa2.91□□□□□ -1.94
CCDC88A-203ENST00000412148 FLG2Q5D862 2391 aaPredicted RBP2.91□□□□□ -1.94
CCDC88A-203ENST00000412148 SMR3BP02814 79 aaPredicted RBP2.9□□□□□ -1.94
CCDC88A-203ENST00000412148 KRTAP13-4Q3LI77 160 aa2.9□□□□□ -1.95
CCDC88A-203ENST00000412148 DYNC1H1Q14204 4646 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-203ENST00000412148 HSPG2P98160 4391 aa2.88□□□□□ -1.95
CCDC88A-203ENST00000412148 M0QZ58 72 aa2.86□□□□□ -1.95
CCDC88A-203ENST00000412148 FAT3Q8TDW7 4589 aa2.86□□□□□ -1.95
CCDC88A-203ENST00000412148 FAT1Q14517 4588 aa2.86□□□□□ -1.95
CCDC88A-203ENST00000412148 TPRXLQ17RH7 258 aa2.85□□□□□ -1.95
CCDC88A-203ENST00000412148 LRP1Q07954 4544 aaKnown RBP2.85□□□□□ -1.95
CCDC88A-203ENST00000412148 P0C880 135 aa2.84□□□□□ -1.96
CCDC88A-203ENST00000412148 KRTAP4-9Q9BYQ8 210 aa2.84□□□□□ -1.96
CCDC88A-203ENST00000412148 KRTAP12-1P59990 96 aa2.83□□□□□ -1.96
CCDC88A-203ENST00000412148 LCE4AQ5TA78 99 aa2.83□□□□□ -1.96
CCDC88A-203ENST00000412148 DNHD1Q96M86 4753 aa2.83□□□□□ -1.96
CCDC88A-203ENST00000412148 KRTAP15-1Q3LI76 137 aa2.82□□□□□ -1.96
CCDC88A-203ENST00000412148 KRTAP12-2P59991 146 aa2.82□□□□□ -1.96
CCDC88A-203ENST00000412148 CRIPTQ9P021 101 aa2.81□□□□□ -1.96
CCDC88A-203ENST00000412148 Q5VSD8 79 aa2.81□□□□□ -1.96
CCDC88A-203ENST00000412148 MT1HL1P0DM35 61 aa2.8□□□□□ -1.96
CCDC88A-203ENST00000412148 A0A0D9SG42 100 aa2.79□□□□□ -1.96
CCDC88A-203ENST00000412148 KRTAP4-2Q9BYR5 136 aa2.77□□□□□ -1.97
CCDC88A-203ENST00000412148 KRTAP9-7A8MTY7 169 aa2.76□□□□□ -1.97
CCDC88A-203ENST00000412148 SPINT4Q6UDR6 99 aa2.76□□□□□ -1.97
CCDC88A-203ENST00000412148 KRTAP19-4Q3LI73 84 aa2.75□□□□□ -1.97
CCDC88A-203ENST00000412148 RYR2Q92736 4967 aa2.74□□□□□ -1.97
CCDC88A-203ENST00000412148 C10orf95Q9H7T3 257 aa2.74□□□□□ -1.97
CCDC88A-203ENST00000412148 CAMK2N1Q7Z7J9 78 aa2.72□□□□□ -1.97
CCDC88A-203ENST00000412148 KRTAP17-1Q9BYP8 105 aa2.72□□□□□ -1.97
CCDC88A-203ENST00000412148 KRTAP4-11Q9BYQ6 195 aa2.71□□□□□ -1.97
CCDC88A-203ENST00000412148 DMBT1Q9UGM3 2413 aaPredicted RBP2.71□□□□□ -1.98
CCDC88A-203ENST00000412148 MYCBP2O75592 4640 aa2.69□□□□□ -1.98
CCDC88A-203ENST00000412148 PP632Q6XCG6 107 aa2.68□□□□□ -1.98
CCDC88A-203ENST00000412148 KRTAP4-5Q9BYR2 181 aa2.68□□□□□ -1.98
CCDC88A-203ENST00000412148 NDUFAF8A1L188 74 aa2.67□□□□□ -1.98
CCDC88A-203ENST00000412148 R4GN34 69 aa2.67□□□□□ -1.98
CCDC88A-203ENST00000412148 RYR1P21817 5038 aa2.66□□□□□ -1.98
CCDC88A-203ENST00000412148 KRTAP19-2Q3LHN2 52 aa2.64□□□□□ -1.99
CCDC88A-203ENST00000412148 LCE5AQ5TCM9 118 aa2.64□□□□□ -1.99
CCDC88A-203ENST00000412148 PLAC4Q8WY50 150 aa2.62□□□□□ -1.99
CCDC88A-203ENST00000412148 MUC17Q685J3 4493 aa2.61□□□□□ -1.99
CCDC88A-203ENST00000412148 KRTAP9-8Q9BYQ0 159 aa2.59□□□□□ -1.99
CCDC88A-203ENST00000412148 KMT2CQ8NEZ4 4911 aaKnown RBP2.59□□□□□ -1.99
CCDC88A-203ENST00000412148 LRP2P98164 4655 aa2.58□□□□□ -2
CCDC88A-203ENST00000412148 HMCN1Q96RW7 5635 aa2.58□□□□□ -2
CCDC88A-203ENST00000412148 LPAP08519 4548 aa2.58□□□□□ -2
CCDC88A-203ENST00000412148 KRTAP5-3Q6L8H2 238 aa2.58□□□□□ -2
CCDC88A-203ENST00000412148 KRTAP4-1Q9BYQ7 146 aa2.57□□□□□ -2
CCDC88A-203ENST00000412148 KRTAP9-3Q9BYQ3 159 aa2.55□□□□□ -2
CCDC88A-203ENST00000412148 SPRR5A0A1B0GTR4 108 aa2.55□□□□□ -2
CCDC88A-203ENST00000412148 RYR3Q15413 4870 aa2.54□□□□□ -2
CCDC88A-203ENST00000412148 KIAA1109Q2LD37 5005 aa2.51□□□□□ -2.01
CCDC88A-203ENST00000412148 TNP1P09430 55 aa2.51□□□□□ -2.01
CCDC88A-203ENST00000412148 SPRR2GQ9BYE4 73 aa2.48□□□□□ -2.01
CCDC88A-203ENST00000412148 FLGP20930 4061 aaPredicted RBP2.48□□□□□ -2.01
CCDC88A-203ENST00000412148 HERC1Q15751 4861 aa2.46□□□□□ -2.02
CCDC88A-203ENST00000412148 ABCA13Q86UQ4 5058 aa2.44□□□□□ -2.02
CCDC88A-203ENST00000412148 BIRC6Q9NR09 4857 aa2.4□□□□□ -2.03
CCDC88A-203ENST00000412148 EPPK1P58107 5090 aaKnown RBP2.39□□□□□ -2.03
CCDC88A-203ENST00000412148 KRTAP19-8Q3LI54 63 aa2.37□□□□□ -2.03
CCDC88A-203ENST00000412148 KRTAP8-1Q8IUC2 63 aa2.37□□□□□ -2.03
CCDC88A-203ENST00000412148 LCE1FQ5T754 118 aa2.33□□□□□ -2.04
CCDC88A-203ENST00000412148 MT1HP80294 61 aa2.32□□□□□ -2.04
CCDC88A-203ENST00000412148 LCE3AQ5TA76 89 aa2.32□□□□□ -2.04
CCDC88A-203ENST00000412148 INE1O15225 51 aa2.3□□□□□ -2.04
CCDC88A-203ENST00000412148 MT2AP02795 61 aa2.3□□□□□ -2.04
CCDC88A-203ENST00000412148 HERC2O95714 4834 aa2.3□□□□□ -2.04
CCDC88A-203ENST00000412148 MT1FP04733 61 aa2.29□□□□□ -2.04
CCDC88A-203ENST00000412148 PRO2289Q9P1D8 64 aa2.28□□□□□ -2.04
CCDC88A-203ENST00000412148 MT1BP07438 61 aa2.27□□□□□ -2.05
CCDC88A-203ENST00000412148 KRTAP10-5P60370 271 aa2.27□□□□□ -2.05
CCDC88A-203ENST00000412148 MT1XP80297 61 aa2.27□□□□□ -2.05
CCDC88A-203ENST00000412148 PCLOQ9Y6V0 5065 aa2.25□□□□□ -2.05
CCDC88A-203ENST00000412148 KRTAP10-10P60014 251 aa2.24□□□□□ -2.05
CCDC88A-203ENST00000412148 KRTAP12-3P60328 96 aa2.24□□□□□ -2.05
CCDC88A-203ENST00000412148 KRTAP10-12P60413 245 aa2.23□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 109.3 ms