RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 C8orf17Q9NRJ1 99 aa3.52□□□□□ -1.85
USP40-202ENST00000409945 C7orf65Q6ZTY9 151 aa3.51□□□□□ -1.85
USP40-202ENST00000409945 SERP2Q8N6R1 65 aa3.51□□□□□ -1.85
USP40-202ENST00000409945 A0A1B0GVX0 72 aa3.5□□□□□ -1.85
USP40-202ENST00000409945 NREPQ16612 68 aa3.5□□□□□ -1.85
USP40-202ENST00000409945 DEFB116Q30KQ4 102 aa3.5□□□□□ -1.85
USP40-202ENST00000409945 LUZP6Q538Z0 58 aa3.48□□□□□ -1.85
USP40-202ENST00000409945 LPAP08519 4548 aa3.48□□□□□ -1.85
USP40-202ENST00000409945 A0A1W2PNM2 257 aa3.48□□□□□ -1.85
USP40-202ENST00000409945 BPY2O14599 106 aa3.48□□□□□ -1.85
USP40-202ENST00000409945 RNF213Q63HN8 5207 aa3.46□□□□□ -1.86
USP40-202ENST00000409945 TRAV7A0A075B6U4 112 aa3.46□□□□□ -1.86
USP40-202ENST00000409945 KRTAP13-3Q3SY46 172 aa3.45□□□□□ -1.86
USP40-202ENST00000409945 IGFL1Q6UW32 110 aa3.45□□□□□ -1.86
USP40-202ENST00000409945 A6NED7 52 aa3.44□□□□□ -1.86
USP40-202ENST00000409945 IGKV4-1P06312 121 aa3.44□□□□□ -1.86
USP40-202ENST00000409945 A0A087WSZ3 146 aa3.41□□□□□ -1.86
USP40-202ENST00000409945 A8MWP4 228 aa3.41□□□□□ -1.86
USP40-202ENST00000409945 K7ERS5 55 aa3.41□□□□□ -1.86
USP40-202ENST00000409945 KLKP1Q107X0 134 aa3.41□□□□□ -1.86
USP40-202ENST00000409945 ASB16-AS1Q495Z4 193 aa3.41□□□□□ -1.86
USP40-202ENST00000409945 C20orf197Q8N268 126 aa3.41□□□□□ -1.86
USP40-202ENST00000409945 C9orf92A6NGG3 77 aa3.4□□□□□ -1.86
USP40-202ENST00000409945 A6NN06 94 aa3.4□□□□□ -1.87
USP40-202ENST00000409945 NDUFC1O43677 76 aa3.4□□□□□ -1.87
USP40-202ENST00000409945 A0A0G2JQZ4 141 aa3.39□□□□□ -1.87
USP40-202ENST00000409945 K7EQZ3 153 aa3.39□□□□□ -1.87
USP40-202ENST00000409945 ATP11AUNQ6ZP68 121 aa3.38□□□□□ -1.87
USP40-202ENST00000409945 CYSTM1Q9H1C7 97 aa3.38□□□□□ -1.87
USP40-202ENST00000409945 HCG22E2RYF7 251 aa3.38□□□□□ -1.87
USP40-202ENST00000409945 TMEM254Q8TBM7 123 aa3.38□□□□□ -1.87
USP40-202ENST00000409945 H7BZZ5 65 aa3.37□□□□□ -1.87
USP40-202ENST00000409945 LINC00472Q9H8W2 130 aa3.37□□□□□ -1.87
USP40-202ENST00000409945 MUC17Q685J3 4493 aa3.37□□□□□ -1.87
USP40-202ENST00000409945 MUC2Q02817 5179 aa3.36□□□□□ -1.87
USP40-202ENST00000409945 ATP5EP56381 51 aaPredicted RBP3.36□□□□□ -1.87
USP40-202ENST00000409945 Q5W150 140 aa3.36□□□□□ -1.87
USP40-202ENST00000409945 SNURFQ9Y675 71 aa3.36□□□□□ -1.87
USP40-202ENST00000409945 NDUFB1O75438 58 aa3.35□□□□□ -1.87
USP40-202ENST00000409945 RPL37P61927 97 aaKnown RBP3.34□□□□□ -1.88
USP40-202ENST00000409945 PCOTHQ58A44 107 aa3.34□□□□□ -1.88
USP40-202ENST00000409945 C1orf64Q8NEQ6 169 aa3.34□□□□□ -1.88
USP40-202ENST00000409945 CASC2Q6XLA1 102 aa3.33□□□□□ -1.88
USP40-202ENST00000409945 LCE3DQ9BYE3 92 aa3.33□□□□□ -1.88
USP40-202ENST00000409945 WFDC13Q8IUB5 93 aa3.32□□□□□ -1.88
USP40-202ENST00000409945 Q96NJ1 140 aa3.32□□□□□ -1.88
USP40-202ENST00000409945 H3BPC8 53 aa3.31□□□□□ -1.88
USP40-202ENST00000409945 MMP24-AS1A0A0U1RRL7 71 aa3.31□□□□□ -1.88
USP40-202ENST00000409945 hDV103S1A0JD37 113 aa3.31□□□□□ -1.88
USP40-202ENST00000409945 A8MUU9 505 aa3.3□□□□□ -1.88
USP40-202ENST00000409945 ZCCHC13Q8WW36 166 aaKnown RBP3.3□□□□□ -1.88
USP40-202ENST00000409945 FAT4Q6V0I7 4981 aa3.29□□□□□ -1.88
USP40-202ENST00000409945 KRTAP5-9P26371 169 aa3.29□□□□□ -1.88
USP40-202ENST00000409945 COX6B2Q6YFQ2 88 aa3.29□□□□□ -1.88
USP40-202ENST00000409945 TP53AIP1Q9HCN2 124 aa3.29□□□□□ -1.88
USP40-202ENST00000409945 ROMO1P60602 79 aa3.28□□□□□ -1.88
USP40-202ENST00000409945 TRAV22A0A0B4J277 110 aa3.27□□□□□ -1.89
USP40-202ENST00000409945 H0Y9P7 68 aa3.27□□□□□ -1.89
USP40-202ENST00000409945 Q1T7F1 81 aa3.27□□□□□ -1.89
USP40-202ENST00000409945 C20orf166-AS1Q96NR2 134 aa3.27□□□□□ -1.89
USP40-202ENST00000409945 LINC00208Q96KT6 92 aa3.26□□□□□ -1.89
USP40-202ENST00000409945 KRTAP4-1Q9BYQ7 146 aa3.26□□□□□ -1.89
USP40-202ENST00000409945 MRPL34Q9BQ48 92 aaKnown RBP3.25□□□□□ -1.89
USP40-202ENST00000409945 SPANXA2-OT1Q8N9U9 137 aa3.25□□□□□ -1.89
USP40-202ENST00000409945 CYP4F30PQ9H0H9 118 aa3.25□□□□□ -1.89
USP40-202ENST00000409945 M0R2T5 61 aa3.24□□□□□ -1.89
USP40-202ENST00000409945 KRTAP5-1Q6L8H4 278 aa3.24□□□□□ -1.89
USP40-202ENST00000409945 SPTSSBQ8NFR3 76 aa3.24□□□□□ -1.89
USP40-202ENST00000409945 LOC101927531A0A1B0GV80 90 aa3.2□□□□□ -1.9
USP40-202ENST00000409945 LCE3AQ5TA76 89 aa3.19□□□□□ -1.9
USP40-202ENST00000409945 P0C880 135 aa3.17□□□□□ -1.9
USP40-202ENST00000409945 MT1HP80294 61 aa3.17□□□□□ -1.9
USP40-202ENST00000409945 MIR22HGQ0VDD5 57 aa3.17□□□□□ -1.9
USP40-202ENST00000409945 CRCT1Q9UGL9 99 aa3.17□□□□□ -1.9
USP40-202ENST00000409945 KRTAP19-2Q3LHN2 52 aa3.15□□□□□ -1.9
USP40-202ENST00000409945 CDC42SE1Q9NRR8 79 aa3.14□□□□□ -1.91
USP40-202ENST00000409945 SPRR5A0A1B0GTR4 108 aa3.13□□□□□ -1.91
USP40-202ENST00000409945 SPINK7P58062 85 aa3.13□□□□□ -1.91
USP40-202ENST00000409945 COA5Q86WW8 74 aa3.13□□□□□ -1.91
USP40-202ENST00000409945 FLGP20930 4061 aaPredicted RBP3.13□□□□□ -1.91
USP40-202ENST00000409945 HRES1P13985 223 aa3.1□□□□□ -1.91
USP40-202ENST00000409945 ACYP2P14621 99 aa3.1□□□□□ -1.91
USP40-202ENST00000409945 KRTAP25-1Q3LHN0 102 aa3.1□□□□□ -1.91
USP40-202ENST00000409945 Q5VV11 94 aa3.1□□□□□ -1.91
USP40-202ENST00000409945 DMAC1Q96GE9 116 aa3.09□□□□□ -1.91
USP40-202ENST00000409945 A0A1B0GU33 70 aa3.09□□□□□ -1.92
USP40-202ENST00000409945 CHKB-CPT1BH3BT56 60 aa3.09□□□□□ -1.92
USP40-202ENST00000409945 CSAG1Q6PB30 78 aa3.06□□□□□ -1.92
USP40-202ENST00000409945 LINC01558Q9Y6Z2 57 aa3.05□□□□□ -1.92
USP40-202ENST00000409945 OBSCNQ5VST9 7968 aa3.05□□□□□ -1.92
USP40-202ENST00000409945 PRR15LQ9BU68 103 aa3.04□□□□□ -1.92
USP40-202ENST00000409945 H1FX-AS1Q4G0G2 97 aa3.03□□□□□ -1.92
USP40-202ENST00000409945 KRTAP4-4Q9BYR3 166 aa3.03□□□□□ -1.92
USP40-202ENST00000409945 KRTAP10-10P60014 251 aa3.03□□□□□ -1.92
USP40-202ENST00000409945 FSIP2Q5CZC0 6907 aa3.02□□□□□ -1.93
USP40-202ENST00000409945 KRTAP5-5Q701N2 237 aaPredicted RBP2.99□□□□□ -1.93
USP40-202ENST00000409945 KRTAP5-4Q6L8H1 288 aa2.99□□□□□ -1.93
USP40-202ENST00000409945 R4GN34 69 aa2.98□□□□□ -1.93
USP40-202ENST00000409945 A0A1B0GU69 56 aa2.97□□□□□ -1.93
USP40-202ENST00000409945 MT2AP02795 61 aa2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms