RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 HERC1Q15751 4861 aa2.71□□□□□ -1.98
SF3B1-202ENST00000409915 LRP1Q07954 4544 aaKnown RBP2.7□□□□□ -1.98
SF3B1-202ENST00000409915 ROMO1P60602 79 aa2.7□□□□□ -1.98
SF3B1-202ENST00000409915 SPRR4Q96PI1 79 aa2.7□□□□□ -1.98
SF3B1-202ENST00000409915 FLG2Q5D862 2391 aaPredicted RBP2.69□□□□□ -1.98
SF3B1-202ENST00000409915 A0A1W2PNN7 141 aa2.69□□□□□ -1.98
SF3B1-202ENST00000409915 H0Y9P7 68 aa2.69□□□□□ -1.98
SF3B1-202ENST00000409915 DSCR10P59022 87 aa2.69□□□□□ -1.98
SF3B1-202ENST00000409915 KRTAP10-4P60372 401 aaPredicted RBP2.69□□□□□ -1.98
SF3B1-202ENST00000409915 RPL37AP61513 92 aaKnown RBP2.69□□□□□ -1.98
SF3B1-202ENST00000409915 A0A1B0GU33 70 aa2.67□□□□□ -1.98
SF3B1-202ENST00000409915 KRTAP11-1Q8IUC1 163 aa2.67□□□□□ -1.98
SF3B1-202ENST00000409915 CSAG1Q6PB30 78 aa2.66□□□□□ -1.98
SF3B1-202ENST00000409915 SPAG11AQ6PDA7 123 aa2.66□□□□□ -1.98
SF3B1-202ENST00000409915 A0A087WSZ3 146 aa2.65□□□□□ -1.99
SF3B1-202ENST00000409915 KRTAP25-1Q3LHN0 102 aa2.65□□□□□ -1.99
SF3B1-202ENST00000409915 PSORS1C2Q9UIG4 136 aa2.65□□□□□ -1.99
SF3B1-202ENST00000409915 HMCN2Q8NDA2 5059 aa2.64□□□□□ -1.99
SF3B1-202ENST00000409915 C1orf137Q5JT78 98 aa2.64□□□□□ -1.99
SF3B1-202ENST00000409915 TNXBP22105 4242 aa2.64□□□□□ -1.99
SF3B1-202ENST00000409915 DMBT1Q9UGM3 2413 aaPredicted RBP2.63□□□□□ -1.99
SF3B1-202ENST00000409915 K7EQZ3 153 aa2.63□□□□□ -1.99
SF3B1-202ENST00000409915 HRES1P13985 223 aa2.62□□□□□ -1.99
SF3B1-202ENST00000409915 LINC00483Q53H64 154 aa2.62□□□□□ -1.99
SF3B1-202ENST00000409915 P0C880 135 aa2.61□□□□□ -1.99
SF3B1-202ENST00000409915 MIR22HGQ0VDD5 57 aa2.61□□□□□ -1.99
SF3B1-202ENST00000409915 C20orf166-AS1Q96NR2 134 aa2.61□□□□□ -1.99
SF3B1-202ENST00000409915 MT1HL1P0DM35 61 aa2.6□□□□□ -1.99
SF3B1-202ENST00000409915 PRLHP81277 87 aa2.6□□□□□ -1.99
SF3B1-202ENST00000409915 SPINT4Q6UDR6 99 aa2.6□□□□□ -1.99
SF3B1-202ENST00000409915 SPINK6Q6UWN8 80 aa2.6□□□□□ -1.99
SF3B1-202ENST00000409915 KRTAP2-2Q9BYT5 123 aa2.6□□□□□ -1.99
SF3B1-202ENST00000409915 UQCR11O14957 56 aa2.59□□□□□ -1.99
SF3B1-202ENST00000409915 TP53AIP1Q9HCN2 124 aa2.59□□□□□ -1.99
SF3B1-202ENST00000409915 KRTAP10-7P60409 375 aaPredicted RBP2.58□□□□□ -2
SF3B1-202ENST00000409915 KRTAP1-4P0C5Y4 121 aa2.57□□□□□ -2
SF3B1-202ENST00000409915 KRTAP13-1Q8IUC0 172 aa2.57□□□□□ -2
SF3B1-202ENST00000409915 ANAPC11Q9NYG5 84 aa2.57□□□□□ -2
SF3B1-202ENST00000409915 R4GN34 69 aa2.57□□□□□ -2
SF3B1-202ENST00000409915 LRP2P98164 4655 aa2.55□□□□□ -2
SF3B1-202ENST00000409915 UBR4Q5T4S7 5183 aa2.55□□□□□ -2
SF3B1-202ENST00000409915 SPRR1AP35321 89 aa2.54□□□□□ -2
SF3B1-202ENST00000409915 KRTAP10-8P60410 259 aa2.54□□□□□ -2
SF3B1-202ENST00000409915 WFDC13Q8IUB5 93 aa2.54□□□□□ -2
SF3B1-202ENST00000409915 DMAC1Q96GE9 116 aa2.54□□□□□ -2
SF3B1-202ENST00000409915 LINC00472Q9H8W2 130 aa2.54□□□□□ -2
SF3B1-202ENST00000409915 MMP24-AS1A0A0U1RRL7 71 aa2.53□□□□□ -2
SF3B1-202ENST00000409915 ACYP2P14621 99 aa2.53□□□□□ -2
SF3B1-202ENST00000409915 KRTAP10-6P60371 365 aaPredicted RBP2.53□□□□□ -2
SF3B1-202ENST00000409915 KRTAP13-2Q52LG2 175 aa2.53□□□□□ -2
SF3B1-202ENST00000409915 A0A1B0GU69 56 aa2.52□□□□□ -2.01
SF3B1-202ENST00000409915 Q6ZRX8 168 aa2.52□□□□□ -2.01
SF3B1-202ENST00000409915 RNF213Q63HN8 5207 aa2.51□□□□□ -2.01
SF3B1-202ENST00000409915 LPAP08519 4548 aa2.5□□□□□ -2.01
SF3B1-202ENST00000409915 KRTAP13-3Q3SY46 172 aa2.5□□□□□ -2.01
SF3B1-202ENST00000409915 KRTAP5-11Q6L8G4 156 aa2.49□□□□□ -2.01
SF3B1-202ENST00000409915 IGFL1Q6UW32 110 aa2.49□□□□□ -2.01
SF3B1-202ENST00000409915 LINC00304Q8N9R0 145 aa2.49□□□□□ -2.01
SF3B1-202ENST00000409915 PCOTHQ58A44 107 aa2.48□□□□□ -2.01
SF3B1-202ENST00000409915 DEFB105AQ8NG35 78 aa2.48□□□□□ -2.01
SF3B1-202ENST00000409915 PRO2289Q9P1D8 64 aa2.48□□□□□ -2.01
SF3B1-202ENST00000409915 SPRR1BP22528 89 aa2.47□□□□□ -2.01
SF3B1-202ENST00000409915 MT3P25713 68 aa2.47□□□□□ -2.01
SF3B1-202ENST00000409915 A0A0G2JQZ4 141 aa2.46□□□□□ -2.02
SF3B1-202ENST00000409915 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.45□□□□□ -2.02
SF3B1-202ENST00000409915 SSBP3-AS1Q7Z2R9 100 aa2.43□□□□□ -2.02
SF3B1-202ENST00000409915 Q96NJ1 140 aa2.43□□□□□ -2.02
SF3B1-202ENST00000409915 SPINK1P00995 79 aa2.42□□□□□ -2.02
SF3B1-202ENST00000409915 MRPL34Q9BQ48 92 aaKnown RBP2.42□□□□□ -2.02
SF3B1-202ENST00000409915 MUC17Q685J3 4493 aa2.41□□□□□ -2.02
SF3B1-202ENST00000409915 RPS29P62273 56 aaKnown RBP2.4□□□□□ -2.03
SF3B1-202ENST00000409915 MUC2Q02817 5179 aa2.39□□□□□ -2.03
SF3B1-202ENST00000409915 H0YAA0 97 aa2.39□□□□□ -2.03
SF3B1-202ENST00000409915 TPRXLQ17RH7 258 aa2.39□□□□□ -2.03
SF3B1-202ENST00000409915 LCE1EQ5T753 118 aa2.39□□□□□ -2.03
SF3B1-202ENST00000409915 C9orf92A6NGG3 77 aa2.38□□□□□ -2.03
SF3B1-202ENST00000409915 FAT4Q6V0I7 4981 aa2.37□□□□□ -2.03
SF3B1-202ENST00000409915 COX6B2Q6YFQ2 88 aa2.34□□□□□ -2.03
SF3B1-202ENST00000409915 KRTAP4-1Q9BYQ7 146 aa2.33□□□□□ -2.04
SF3B1-202ENST00000409915 H1FX-AS1Q4G0G2 97 aa2.32□□□□□ -2.04
SF3B1-202ENST00000409915 RPL37P61927 97 aaKnown RBP2.29□□□□□ -2.04
SF3B1-202ENST00000409915 LCE1FQ5T754 118 aa2.28□□□□□ -2.04
SF3B1-202ENST00000409915 CRIPTQ9P021 101 aa2.25□□□□□ -2.05
SF3B1-202ENST00000409915 KRTAP10-5P60370 271 aa2.24□□□□□ -2.05
SF3B1-202ENST00000409915 KRTAP19-2Q3LHN2 52 aa2.24□□□□□ -2.05
SF3B1-202ENST00000409915 FLGP20930 4061 aaPredicted RBP2.23□□□□□ -2.05
SF3B1-202ENST00000409915 INE1O15225 51 aa2.2□□□□□ -2.06
SF3B1-202ENST00000409915 MT1HP80294 61 aa2.2□□□□□ -2.06
SF3B1-202ENST00000409915 PLAC4Q8WY50 150 aa2.19□□□□□ -2.06
SF3B1-202ENST00000409915 KRTAP10-12P60413 245 aa2.18□□□□□ -2.06
SF3B1-202ENST00000409915 C10orf95Q9H7T3 257 aa2.18□□□□□ -2.06
SF3B1-202ENST00000409915 M0R2T5 61 aa2.17□□□□□ -2.06
SF3B1-202ENST00000409915 KRTAP5-1Q6L8H4 278 aa2.16□□□□□ -2.06
SF3B1-202ENST00000409915 LCE3CQ5T5A8 94 aa2.14□□□□□ -2.07
SF3B1-202ENST00000409915 S4R3F8 94 aa2.13□□□□□ -2.07
SF3B1-202ENST00000409915 KRTAP9-6A8MVA2 160 aa2.12□□□□□ -2.07
SF3B1-202ENST00000409915 KRTAP13-4Q3LI77 160 aa2.11□□□□□ -2.07
SF3B1-202ENST00000409915 SPRR5A0A1B0GTR4 108 aa2.1□□□□□ -2.07
SF3B1-202ENST00000409915 USH2AO75445 5202 aa2.09□□□□□ -2.07
SF3B1-202ENST00000409915 MT2AP02795 61 aa2.08□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms