RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 SPRR2FQ96RM1 72 aa3.18□□□□□ -1.9
SCN9A-202ENST00000409435 KRTAP3-1Q9BYR8 98 aa3.18□□□□□ -1.9
SCN9A-202ENST00000409435 DNAH10Q8IVF4 4471 aa3.17□□□□□ -1.9
SCN9A-202ENST00000409435 SPENQ96T58 3664 aaKnown RBP3.17□□□□□ -1.9
SCN9A-202ENST00000409435 BIRC6Q9NR09 4857 aa3.17□□□□□ -1.9
SCN9A-202ENST00000409435 BSNQ9UPA5 3926 aa3.16□□□□□ -1.9
SCN9A-202ENST00000409435 PLECQ15149 4684 aaKnown RBP3.15□□□□□ -1.9
SCN9A-202ENST00000409435 KRTAP9-6A0A140TA67 174 aa3.14□□□□□ -1.91
SCN9A-202ENST00000409435 KRTAP9-2Q9BYQ4 174 aa3.13□□□□□ -1.91
SCN9A-202ENST00000409435 SPRR2EP22531 72 aa3.13□□□□□ -1.91
SCN9A-202ENST00000409435 SPRR2BP35325 72 aa3.13□□□□□ -1.91
SCN9A-202ENST00000409435 SPRR2AP35326 72 aa3.13□□□□□ -1.91
SCN9A-202ENST00000409435 MT2AP02795 61 aa3.11□□□□□ -1.91
SCN9A-202ENST00000409435 KRTAP4-1Q9BYQ7 146 aa3.11□□□□□ -1.91
SCN9A-202ENST00000409435 DYNC2H1Q8NCM8 4307 aaKnown RBP3.11□□□□□ -1.91
SCN9A-202ENST00000409435 DYNC1H1Q14204 4646 aaKnown RBP3.1□□□□□ -1.91
SCN9A-202ENST00000409435 CUBNO60494 3623 aa3.09□□□□□ -1.92
SCN9A-202ENST00000409435 ANK2Q01484 3957 aa3.09□□□□□ -1.92
SCN9A-202ENST00000409435 KRTAP12-3P60328 96 aa3.08□□□□□ -1.92
SCN9A-202ENST00000409435 FAT2Q9NYQ8 4349 aa3.07□□□□□ -1.92
SCN9A-202ENST00000409435 KRTAP10-5P60370 271 aa3.07□□□□□ -1.92
SCN9A-202ENST00000409435 RYR1P21817 5038 aa3.05□□□□□ -1.92
SCN9A-202ENST00000409435 KRTAP10-7P60409 375 aaPredicted RBP3.05□□□□□ -1.92
SCN9A-202ENST00000409435 SPRR2DP22532 72 aa3.05□□□□□ -1.92
SCN9A-202ENST00000409435 KRTAP3-2Q9BYR7 98 aa3.02□□□□□ -1.93
SCN9A-202ENST00000409435 DNAH17Q9UFH2 4485 aa3.02□□□□□ -1.93
SCN9A-202ENST00000409435 LRP1BQ9NZR2 4599 aa3.01□□□□□ -1.93
SCN9A-202ENST00000409435 RYR3Q15413 4870 aa3.01□□□□□ -1.93
SCN9A-202ENST00000409435 MT1FP04733 61 aa3.01□□□□□ -1.93
SCN9A-202ENST00000409435 VPS13DQ5THJ4 4388 aa3.01□□□□□ -1.93
SCN9A-202ENST00000409435 PRKDCP78527 4128 aaKnown RBP3□□□□□ -1.93
SCN9A-202ENST00000409435 KRTAP3-3Q9BYR6 98 aa3□□□□□ -1.93
SCN9A-202ENST00000409435 HERC2O95714 4834 aa2.99□□□□□ -1.93
SCN9A-202ENST00000409435 DNAH2Q9P225 4427 aa2.98□□□□□ -1.93
SCN9A-202ENST00000409435 LCE3AQ5TA76 89 aa2.98□□□□□ -1.93
SCN9A-202ENST00000409435 ZNF469Q96JG9 3925 aaPredicted RBP2.96□□□□□ -1.94
SCN9A-202ENST00000409435 KRTAP19-1Q8IUB9 90 aa2.96□□□□□ -1.94
SCN9A-202ENST00000409435 DNAH6Q9C0G6 4158 aa2.95□□□□□ -1.94
SCN9A-202ENST00000409435 SVEP1Q4LDE5 3571 aa2.94□□□□□ -1.94
SCN9A-202ENST00000409435 DNAH3Q8TD57 4116 aa2.94□□□□□ -1.94
SCN9A-202ENST00000409435 LCE2BO14633 110 aa2.94□□□□□ -1.94
SCN9A-202ENST00000409435 PKHD1L1Q86WI1 4243 aa2.92□□□□□ -1.94
SCN9A-202ENST00000409435 KRTAP19-4Q3LI73 84 aa2.92□□□□□ -1.94
SCN9A-202ENST00000409435 HERC1Q15751 4861 aa2.92□□□□□ -1.94
SCN9A-202ENST00000409435 STARD9Q9P2P6 4700 aa2.92□□□□□ -1.94
SCN9A-202ENST00000409435 LCE2DQ5TA82 110 aaPredicted RBP2.92□□□□□ -1.94
SCN9A-202ENST00000409435 SPRR2GQ9BYE4 73 aa2.9□□□□□ -1.94
SCN9A-202ENST00000409435 SACSQ9NZJ4 4579 aa2.9□□□□□ -1.95
SCN9A-202ENST00000409435 VPS13CQ709C8 3753 aa2.89□□□□□ -1.95
SCN9A-202ENST00000409435 RYR2Q92736 4967 aa2.89□□□□□ -1.95
SCN9A-202ENST00000409435 KRTAP9-7A8MTY7 169 aa2.88□□□□□ -1.95
SCN9A-202ENST00000409435 FAT1Q14517 4588 aa2.87□□□□□ -1.95
SCN9A-202ENST00000409435 FAT3Q8TDW7 4589 aa2.86□□□□□ -1.95
SCN9A-202ENST00000409435 KRTAP20-1Q3LI63 56 aa2.86□□□□□ -1.95
SCN9A-202ENST00000409435 PCLOQ9Y6V0 5065 aa2.86□□□□□ -1.95
SCN9A-202ENST00000409435 DNAH8Q96JB1 4490 aa2.86□□□□□ -1.95
SCN9A-202ENST00000409435 LCE2CQ5TA81 110 aa2.83□□□□□ -1.96
SCN9A-202ENST00000409435 KIAA1109Q2LD37 5005 aa2.83□□□□□ -1.96
SCN9A-202ENST00000409435 DNAH7Q8WXX0 4024 aa2.81□□□□□ -1.96
SCN9A-202ENST00000409435 KRTAP12-4P60329 112 aa2.8□□□□□ -1.96
SCN9A-202ENST00000409435 VPS13BQ7Z7G8 4022 aa2.8□□□□□ -1.96
SCN9A-202ENST00000409435 CMYA5Q8N3K9 4069 aa2.79□□□□□ -1.96
SCN9A-202ENST00000409435 HSPG2P98160 4391 aa2.78□□□□□ -1.96
SCN9A-202ENST00000409435 FRAS1Q86XX4 4008 aa2.77□□□□□ -1.97
SCN9A-202ENST00000409435 SPRR5A0A1B0GTR4 108 aa2.77□□□□□ -1.97
SCN9A-202ENST00000409435 APOBP04114 4563 aaKnown RBP2.77□□□□□ -1.97
SCN9A-202ENST00000409435 KMT2AQ03164 3969 aa2.76□□□□□ -1.97
SCN9A-202ENST00000409435 KRTAP9-8Q9BYQ0 159 aa2.76□□□□□ -1.97
SCN9A-202ENST00000409435 KRTAP19-5Q3LI72 72 aa2.74□□□□□ -1.97
SCN9A-202ENST00000409435 KRTAP19-8Q3LI54 63 aa2.74□□□□□ -1.97
SCN9A-202ENST00000409435 KRTAP9-3Q9BYQ3 159 aa2.73□□□□□ -1.97
SCN9A-202ENST00000409435 CSMD3Q7Z407 3707 aa2.72□□□□□ -1.97
SCN9A-202ENST00000409435 LCE3BQ5TA77 95 aa2.72□□□□□ -1.97
SCN9A-202ENST00000409435 MYCBP2O75592 4640 aa2.7□□□□□ -1.98
SCN9A-202ENST00000409435 LRP1Q07954 4544 aaKnown RBP2.69□□□□□ -1.98
SCN9A-202ENST00000409435 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.68□□□□□ -1.98
SCN9A-202ENST00000409435 LCE2AQ5TA79 106 aaPredicted RBP2.68□□□□□ -1.98
SCN9A-202ENST00000409435 PKD1P98161 4303 aa2.68□□□□□ -1.98
SCN9A-202ENST00000409435 KRTAP19-6Q3LI70 58 aa2.68□□□□□ -1.98
SCN9A-202ENST00000409435 KRTAP2-3P0C7H8 128 aa2.67□□□□□ -1.98
SCN9A-202ENST00000409435 KRTAP2-4Q9BYR9 128 aa2.67□□□□□ -1.98
SCN9A-202ENST00000409435 KRTAP6-3Q3LI67 103 aa2.67□□□□□ -1.98
SCN9A-202ENST00000409435 LYSTQ99698 3801 aa2.66□□□□□ -1.98
SCN9A-202ENST00000409435 MT3P25713 68 aa2.66□□□□□ -1.98
SCN9A-202ENST00000409435 LCE3CQ5T5A8 94 aa2.65□□□□□ -1.98
SCN9A-202ENST00000409435 MT4P47944 62 aa2.65□□□□□ -1.98
SCN9A-202ENST00000409435 KMT2CQ8NEZ4 4911 aaKnown RBP2.64□□□□□ -1.99
SCN9A-202ENST00000409435 MT1GP13640 62 aa2.64□□□□□ -1.99
SCN9A-202ENST00000409435 MT1BP07438 61 aa2.63□□□□□ -1.99
SCN9A-202ENST00000409435 EPPK1P58107 5090 aaKnown RBP2.63□□□□□ -1.99
SCN9A-202ENST00000409435 PKHD1P08F94 4074 aa2.61□□□□□ -1.99
SCN9A-202ENST00000409435 ABCA13Q86UQ4 5058 aa2.61□□□□□ -1.99
SCN9A-202ENST00000409435 LRP2P98164 4655 aa2.59□□□□□ -1.99
SCN9A-202ENST00000409435 HECTD4Q9Y4D8 3996 aa2.59□□□□□ -2
SCN9A-202ENST00000409435 MT1XP80297 61 aa2.58□□□□□ -2
SCN9A-202ENST00000409435 HYDINQ4G0P3 5121 aa2.58□□□□□ -2
SCN9A-202ENST00000409435 SYNE2Q8WXH0 6885 aaKnown RBP2.55□□□□□ -2
SCN9A-202ENST00000409435 KRTAP4-8A0A0G2JLE6 195 aa2.55□□□□□ -2
SCN9A-202ENST00000409435 KRTAP19-3Q7Z4W3 81 aa2.55□□□□□ -2
SCN9A-202ENST00000409435 KRTAP4-8Q9BYQ9 185 aa2.55□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms