RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 DYNC2H1Q8NCM8 4307 aaKnown RBP6.25□□□□□ -1.41
HMGB1-206ENST00000405805 KRTAP10-8P60410 259 aa6.24□□□□□ -1.41
HMGB1-206ENST00000405805 RPS29P62273 56 aaKnown RBP6.22□□□□□ -1.41
HMGB1-206ENST00000405805 HYDINQ4G0P3 5121 aa6.22□□□□□ -1.41
HMGB1-206ENST00000405805 A0A1B0GVY2 172 aa6.21□□□□□ -1.42
HMGB1-206ENST00000405805 VPS13BQ7Z7G8 4022 aa6.17□□□□□ -1.42
HMGB1-206ENST00000405805 J3QL48 77 aa6.16□□□□□ -1.42
HMGB1-206ENST00000405805 DYNC1H1Q14204 4646 aaKnown RBP6.15□□□□□ -1.43
HMGB1-206ENST00000405805 PKHD1P08F94 4074 aa6.12□□□□□ -1.43
HMGB1-206ENST00000405805 XP32Q5T750 250 aa6.1□□□□□ -1.43
HMGB1-206ENST00000405805 KRTAP15-1Q3LI76 137 aa6.08□□□□□ -1.44
HMGB1-206ENST00000405805 MYCBP2O75592 4640 aa6.07□□□□□ -1.44
HMGB1-206ENST00000405805 ALMS1Q8TCU4 4167 aa6.07□□□□□ -1.44
HMGB1-206ENST00000405805 KRTAP13-4Q3LI77 160 aa6.06□□□□□ -1.44
HMGB1-206ENST00000405805 SACSQ9NZJ4 4579 aa6.03□□□□□ -1.44
HMGB1-206ENST00000405805 KRTAP10-4P60372 401 aaPredicted RBP6.03□□□□□ -1.44
HMGB1-206ENST00000405805 KRTAP12-2P59991 146 aa6□□□□□ -1.45
HMGB1-206ENST00000405805 FAT2Q9NYQ8 4349 aa5.99□□□□□ -1.45
HMGB1-206ENST00000405805 KRTAP10-6P60371 365 aaPredicted RBP5.97□□□□□ -1.45
HMGB1-206ENST00000405805 LRP1Q07954 4544 aaKnown RBP5.96□□□□□ -1.45
HMGB1-206ENST00000405805 APOBP04114 4563 aaKnown RBP5.95□□□□□ -1.46
HMGB1-206ENST00000405805 KMT2CQ8NEZ4 4911 aaKnown RBP5.94□□□□□ -1.46
HMGB1-206ENST00000405805 KIAA1109Q2LD37 5005 aa5.93□□□□□ -1.46
HMGB1-206ENST00000405805 PKD1P98161 4303 aa5.93□□□□□ -1.46
HMGB1-206ENST00000405805 KRTAP3-3Q9BYR6 98 aa5.9□□□□□ -1.47
HMGB1-206ENST00000405805 FAT3Q8TDW7 4589 aa5.86□□□□□ -1.47
HMGB1-206ENST00000405805 KRTAP3-2Q9BYR7 98 aa5.85□□□□□ -1.47
HMGB1-206ENST00000405805 RYR1P21817 5038 aa5.85□□□□□ -1.47
HMGB1-206ENST00000405805 RYR3Q15413 4870 aa5.85□□□□□ -1.47
HMGB1-206ENST00000405805 KRTAP12-1P59990 96 aa5.84□□□□□ -1.48
HMGB1-206ENST00000405805 RYR2Q92736 4967 aa5.83□□□□□ -1.48
HMGB1-206ENST00000405805 MT1HL1P0DM35 61 aa5.81□□□□□ -1.48
HMGB1-206ENST00000405805 KRTAP4-5Q9BYR2 181 aa5.8□□□□□ -1.48
HMGB1-206ENST00000405805 TNP1P09430 55 aa5.79□□□□□ -1.48
HMGB1-206ENST00000405805 PP632Q6XCG6 107 aa5.78□□□□□ -1.48
HMGB1-206ENST00000405805 M0R2T5 61 aa5.76□□□□□ -1.49
HMGB1-206ENST00000405805 KRTAP17-1Q9BYP8 105 aa5.74□□□□□ -1.49
HMGB1-206ENST00000405805 HSPG2P98160 4391 aa5.66□□□□□ -1.5
HMGB1-206ENST00000405805 LRP2P98164 4655 aa5.63□□□□□ -1.51
HMGB1-206ENST00000405805 LORP23490 312 aaPredicted RBP5.58□□□□□ -1.52
HMGB1-206ENST00000405805 PKHD1L1Q86WI1 4243 aa5.58□□□□□ -1.52
HMGB1-206ENST00000405805 EPPK1P58107 5090 aaKnown RBP5.55□□□□□ -1.52
HMGB1-206ENST00000405805 PRO2289Q9P1D8 64 aa5.55□□□□□ -1.52
HMGB1-206ENST00000405805 LPAP08519 4548 aa5.51□□□□□ -1.53
HMGB1-206ENST00000405805 TNXBP22105 4242 aa5.49□□□□□ -1.53
HMGB1-206ENST00000405805 HERC2O95714 4834 aa5.46□□□□□ -1.54
HMGB1-206ENST00000405805 KRTAP4-1Q9BYQ7 146 aa5.41□□□□□ -1.54
HMGB1-206ENST00000405805 ABCA13Q86UQ4 5058 aa5.4□□□□□ -1.55
HMGB1-206ENST00000405805 INE1O15225 51 aa5.36□□□□□ -1.55
HMGB1-206ENST00000405805 KRTAP10-10P60014 251 aa5.31□□□□□ -1.56
HMGB1-206ENST00000405805 MUC2Q02817 5179 aa5.29□□□□□ -1.56
HMGB1-206ENST00000405805 HERC1Q15751 4861 aa5.18□□□□□ -1.58
HMGB1-206ENST00000405805 BIRC6Q9NR09 4857 aa5.12□□□□□ -1.59
HMGB1-206ENST00000405805 RNF213Q63HN8 5207 aa5.09□□□□□ -1.59
HMGB1-206ENST00000405805 FAT4Q6V0I7 4981 aa5.06□□□□□ -1.6
HMGB1-206ENST00000405805 PCLOQ9Y6V0 5065 aa5.03□□□□□ -1.6
HMGB1-206ENST00000405805 LCE3AQ5TA76 89 aa5.01□□□□□ -1.61
HMGB1-206ENST00000405805 UBR4Q5T4S7 5183 aa4.96□□□□□ -1.62
HMGB1-206ENST00000405805 MUC17Q685J3 4493 aa4.95□□□□□ -1.62
HMGB1-206ENST00000405805 KRTAP19-2Q3LHN2 52 aa4.93□□□□□ -1.62
HMGB1-206ENST00000405805 MT1HP80294 61 aa4.91□□□□□ -1.62
HMGB1-206ENST00000405805 FLGP20930 4061 aaPredicted RBP4.9□□□□□ -1.63
HMGB1-206ENST00000405805 HMCN2Q8NDA2 5059 aa4.88□□□□□ -1.63
HMGB1-206ENST00000405805 MT1FP04733 61 aa4.84□□□□□ -1.63
HMGB1-206ENST00000405805 MT2AP02795 61 aa4.84□□□□□ -1.64
HMGB1-206ENST00000405805 LCE2CQ5TA81 110 aa4.84□□□□□ -1.64
HMGB1-206ENST00000405805 KRTAP10-12P60413 245 aa4.82□□□□□ -1.64
HMGB1-206ENST00000405805 KRTAP12-3P60328 96 aa4.81□□□□□ -1.64
HMGB1-206ENST00000405805 KRTAP19-1Q8IUB9 90 aa4.79□□□□□ -1.64
HMGB1-206ENST00000405805 SPRR2GQ9BYE4 73 aa4.78□□□□□ -1.64
HMGB1-206ENST00000405805 KRTAP23-1A1A580 65 aa4.74□□□□□ -1.65
HMGB1-206ENST00000405805 CRCT1Q9UGL9 99 aa4.67□□□□□ -1.66
HMGB1-206ENST00000405805 KRTAP9-8Q9BYQ0 159 aa4.67□□□□□ -1.66
HMGB1-206ENST00000405805 FSIP2Q5CZC0 6907 aa4.61□□□□□ -1.67
HMGB1-206ENST00000405805 KRTAP10-7P60409 375 aaPredicted RBP4.6□□□□□ -1.67
HMGB1-206ENST00000405805 KRTAP8-1Q8IUC2 63 aa4.57□□□□□ -1.68
HMGB1-206ENST00000405805 KRTAP10-5P60370 271 aa4.57□□□□□ -1.68
HMGB1-206ENST00000405805 SPRR5A0A1B0GTR4 108 aa4.56□□□□□ -1.68
HMGB1-206ENST00000405805 MT1BP07438 61 aa4.55□□□□□ -1.68
HMGB1-206ENST00000405805 MT1XP80297 61 aa4.54□□□□□ -1.68
HMGB1-206ENST00000405805 USH2AO75445 5202 aa4.51□□□□□ -1.69
HMGB1-206ENST00000405805 KRTAP19-8Q3LI54 63 aa4.51□□□□□ -1.69
HMGB1-206ENST00000405805 KRTAP19-5Q3LI72 72 aa4.5□□□□□ -1.69
HMGB1-206ENST00000405805 KRTAP9-3Q9BYQ3 159 aa4.47□□□□□ -1.69
HMGB1-206ENST00000405805 KRTAP4-8A0A0G2JLE6 195 aa4.44□□□□□ -1.7
HMGB1-206ENST00000405805 KRTAP4-8Q9BYQ9 185 aa4.44□□□□□ -1.7
HMGB1-206ENST00000405805 KMT2DO14686 5537 aa4.42□□□□□ -1.7
HMGB1-206ENST00000405805 SYNE1Q8NF91 8797 aaKnown RBP4.42□□□□□ -1.7
HMGB1-206ENST00000405805 LCE2BO14633 110 aa4.38□□□□□ -1.71
HMGB1-206ENST00000405805 OBSCNQ5VST9 7968 aa4.37□□□□□ -1.71
HMGB1-206ENST00000405805 LCE2DQ5TA82 110 aaPredicted RBP4.36□□□□□ -1.71
HMGB1-206ENST00000405805 LCE3CQ5T5A8 94 aa4.36□□□□□ -1.71
HMGB1-206ENST00000405805 KRTAP4-7Q9BYR0 210 aa4.33□□□□□ -1.72
HMGB1-206ENST00000405805 KRTAP12-4P60329 112 aa4.24□□□□□ -1.73
HMGB1-206ENST00000405805 DSTQ03001 7570 aaKnown RBP4.24□□□□□ -1.73
HMGB1-206ENST00000405805 LCE2AQ5TA79 106 aaPredicted RBP4.19□□□□□ -1.74
HMGB1-206ENST00000405805 FCGBPQ9Y6R7 5405 aaPredicted RBP4.18□□□□□ -1.74
HMGB1-206ENST00000405805 KRTAP9-6A8MVA2 160 aa4.07□□□□□ -1.76
HMGB1-206ENST00000405805 MT1GP13640 62 aa4.06□□□□□ -1.76
HMGB1-206ENST00000405805 KRTAP4-3Q9BYR4 195 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms