RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 A0A1B0GVY2 172 aa10.94□□□□□ -0.66
CTCF-202ENST00000401394 KRTAP13-4Q3LI77 160 aa10.93□□□□□ -0.66
CTCF-202ENST00000401394 FAT3Q8TDW7 4589 aa10.92□□□□□ -0.66
CTCF-202ENST00000401394 LPAP08519 4548 aa10.9□□□□□ -0.66
CTCF-202ENST00000401394 KRTAP10-8P60410 259 aa10.88□□□□□ -0.67
CTCF-202ENST00000401394 KRTAP3-3Q9BYR6 98 aa10.85□□□□□ -0.67
CTCF-202ENST00000401394 KRTAP10-6P60371 365 aaPredicted RBP10.83□□□□□ -0.68
CTCF-202ENST00000401394 TNXBP22105 4242 aa10.81□□□□□ -0.68
CTCF-202ENST00000401394 RYR2Q92736 4967 aa10.8□□□□□ -0.68
CTCF-202ENST00000401394 ROMO1P60602 79 aa10.78□□□□□ -0.68
CTCF-202ENST00000401394 C10orf95Q9H7T3 257 aa10.74□□□□□ -0.69
CTCF-202ENST00000401394 P0C880 135 aa10.73□□□□□ -0.69
CTCF-202ENST00000401394 KRTAP3-2Q9BYR7 98 aa10.73□□□□□ -0.69
CTCF-202ENST00000401394 K7ERS5 55 aa10.7□□□□□ -0.7
CTCF-202ENST00000401394 TPRXLQ17RH7 258 aa10.66□□□□□ -0.7
CTCF-202ENST00000401394 RPL37P61927 97 aaKnown RBP10.65□□□□□ -0.71
CTCF-202ENST00000401394 LRP2P98164 4655 aa10.62□□□□□ -0.71
CTCF-202ENST00000401394 KRTAP17-1Q9BYP8 105 aa10.61□□□□□ -0.71
CTCF-202ENST00000401394 XP32Q5T750 250 aa10.58□□□□□ -0.72
CTCF-202ENST00000401394 S4R3F8 94 aa10.57□□□□□ -0.72
CTCF-202ENST00000401394 KRTAP12-2P59991 146 aa10.55□□□□□ -0.72
CTCF-202ENST00000401394 KIAA1109Q2LD37 5005 aa10.52□□□□□ -0.73
CTCF-202ENST00000401394 RYR1P21817 5038 aa10.47□□□□□ -0.73
CTCF-202ENST00000401394 RYR3Q15413 4870 aa10.47□□□□□ -0.73
CTCF-202ENST00000401394 SPINT4Q6UDR6 99 aa10.46□□□□□ -0.73
CTCF-202ENST00000401394 Q5VSD8 79 aa10.45□□□□□ -0.74
CTCF-202ENST00000401394 ABCA13Q86UQ4 5058 aa10.35□□□□□ -0.75
CTCF-202ENST00000401394 KRTAP12-1P59990 96 aa10.32□□□□□ -0.76
CTCF-202ENST00000401394 MT1HL1P0DM35 61 aa10.21□□□□□ -0.78
CTCF-202ENST00000401394 NDUFAF8A1L188 74 aa10.18□□□□□ -0.78
CTCF-202ENST00000401394 EPPK1P58107 5090 aaKnown RBP10.13□□□□□ -0.79
CTCF-202ENST00000401394 KRTAP15-1Q3LI76 137 aa10.13□□□□□ -0.79
CTCF-202ENST00000401394 LORP23490 312 aaPredicted RBP10.04□□□□□ -0.8
CTCF-202ENST00000401394 M0QZ58 72 aa10.02□□□□□ -0.8
CTCF-202ENST00000401394 MUC2Q02817 5179 aa10.02□□□□□ -0.8
CTCF-202ENST00000401394 A0A0A0MQY5 61 aa10□□□□□ -0.81
CTCF-202ENST00000401394 KRTAP4-5Q9BYR2 181 aa9.92□□□□□ -0.82
CTCF-202ENST00000401394 R4GN34 69 aa9.9□□□□□ -0.82
CTCF-202ENST00000401394 MUC17Q685J3 4493 aa9.83□□□□□ -0.84
CTCF-202ENST00000401394 KRTAP4-1Q9BYQ7 146 aa9.81□□□□□ -0.84
CTCF-202ENST00000401394 J3QL48 77 aa9.6□□□□□ -0.87
CTCF-202ENST00000401394 PLAC4Q8WY50 150 aa9.57□□□□□ -0.88
CTCF-202ENST00000401394 HERC2O95714 4834 aa9.51□□□□□ -0.89
CTCF-202ENST00000401394 PCLOQ9Y6V0 5065 aa9.49□□□□□ -0.89
CTCF-202ENST00000401394 FAT4Q6V0I7 4981 aa9.48□□□□□ -0.89
CTCF-202ENST00000401394 CAMK2N1Q7Z7J9 78 aa9.46□□□□□ -0.89
CTCF-202ENST00000401394 SEC61BP60468 96 aaKnown RBP9.45□□□□□ -0.9
CTCF-202ENST00000401394 KRTAP19-2Q3LHN2 52 aa9.45□□□□□ -0.9
CTCF-202ENST00000401394 BIRC6Q9NR09 4857 aa9.44□□□□□ -0.9
CTCF-202ENST00000401394 HERC1Q15751 4861 aa9.3□□□□□ -0.92
CTCF-202ENST00000401394 FLGP20930 4061 aaPredicted RBP9.23□□□□□ -0.93
CTCF-202ENST00000401394 RNF213Q63HN8 5207 aa9.12□□□□□ -0.95
CTCF-202ENST00000401394 LUZP6Q538Z0 58 aa9.08□□□□□ -0.96
CTCF-202ENST00000401394 PP632Q6XCG6 107 aa9.05□□□□□ -0.96
CTCF-202ENST00000401394 TNP1P09430 55 aa8.98□□□□□ -0.97
CTCF-202ENST00000401394 HMCN2Q8NDA2 5059 aa8.93□□□□□ -0.98
CTCF-202ENST00000401394 UBR4Q5T4S7 5183 aa8.88□□□□□ -0.99
CTCF-202ENST00000401394 LCE2CQ5TA81 110 aa8.81□□□□□ -1
CTCF-202ENST00000401394 KRTAP19-1Q8IUB9 90 aa8.78□□□□□ -1
CTCF-202ENST00000401394 M0R2T5 61 aa8.73□□□□□ -1.01
CTCF-202ENST00000401394 LCE3AQ5TA76 89 aa8.71□□□□□ -1.01
CTCF-202ENST00000401394 SPRR5A0A1B0GTR4 108 aa8.68□□□□□ -1.02
CTCF-202ENST00000401394 SPRR2GQ9BYE4 73 aa8.63□□□□□ -1.03
CTCF-202ENST00000401394 MT1FP04733 61 aa8.58□□□□□ -1.04
CTCF-202ENST00000401394 KRTAP10-10P60014 251 aa8.55□□□□□ -1.04
CTCF-202ENST00000401394 MT1HP80294 61 aa8.53□□□□□ -1.04
CTCF-202ENST00000401394 KRTAP23-1A1A580 65 aa8.52□□□□□ -1.05
CTCF-202ENST00000401394 MT2AP02795 61 aa8.48□□□□□ -1.05
CTCF-202ENST00000401394 KRTAP9-8Q9BYQ0 159 aa8.38□□□□□ -1.07
CTCF-202ENST00000401394 USH2AO75445 5202 aa8.36□□□□□ -1.07
CTCF-202ENST00000401394 KMT2DO14686 5537 aa8.34□□□□□ -1.07
CTCF-202ENST00000401394 KRTAP10-5P60370 271 aa8.31□□□□□ -1.08
CTCF-202ENST00000401394 MT1XP80297 61 aa8.28□□□□□ -1.08
CTCF-202ENST00000401394 MT1BP07438 61 aa8.27□□□□□ -1.09
CTCF-202ENST00000401394 KRTAP10-7P60409 375 aaPredicted RBP8.23□□□□□ -1.09
CTCF-202ENST00000401394 KRTAP8-1Q8IUC2 63 aa8.22□□□□□ -1.09
CTCF-202ENST00000401394 KRTAP12-3P60328 96 aa8.17□□□□□ -1.1
CTCF-202ENST00000401394 KRTAP19-8Q3LI54 63 aa8.15□□□□□ -1.11
CTCF-202ENST00000401394 KRTAP10-12P60413 245 aa8.13□□□□□ -1.11
CTCF-202ENST00000401394 KRTAP9-3Q9BYQ3 159 aa7.97□□□□□ -1.13
CTCF-202ENST00000401394 KRTAP19-5Q3LI72 72 aa7.86□□□□□ -1.15
CTCF-202ENST00000401394 PRO2289Q9P1D8 64 aa7.86□□□□□ -1.15
CTCF-202ENST00000401394 KRTAP4-8A0A0G2JLE6 195 aa7.83□□□□□ -1.16
CTCF-202ENST00000401394 KRTAP4-8Q9BYQ9 185 aa7.83□□□□□ -1.16
CTCF-202ENST00000401394 LCE2BO14633 110 aa7.77□□□□□ -1.17
CTCF-202ENST00000401394 LCE2AQ5TA79 106 aaPredicted RBP7.75□□□□□ -1.17
CTCF-202ENST00000401394 KRTAP9-6A8MVA2 160 aa7.69□□□□□ -1.18
CTCF-202ENST00000401394 KRTAP4-7Q9BYR0 210 aa7.69□□□□□ -1.18
CTCF-202ENST00000401394 INE1O15225 51 aa7.67□□□□□ -1.18
CTCF-202ENST00000401394 LCE3CQ5T5A8 94 aa7.67□□□□□ -1.18
CTCF-202ENST00000401394 FSIP2Q5CZC0 6907 aa7.63□□□□□ -1.19
CTCF-202ENST00000401394 KRTAP19-7Q3SYF9 63 aa7.39□□□□□ -1.23
CTCF-202ENST00000401394 SSPOA2VEC9 5147 aa7.25□□□□□ -1.25
CTCF-202ENST00000401394 DSTQ03001 7570 aaKnown RBP7.18□□□□□ -1.26
CTCF-202ENST00000401394 MUC12Q9UKN1 5478 aa7.18□□□□□ -1.26
CTCF-202ENST00000401394 KRTAP2-3P0C7H8 128 aa7.17□□□□□ -1.26
CTCF-202ENST00000401394 KRTAP2-4Q9BYR9 128 aa7.17□□□□□ -1.26
CTCF-202ENST00000401394 KRTAP2-1Q9BYU5 128 aa7.17□□□□□ -1.26
CTCF-202ENST00000401394 LOC100996750A0A140TA64 210 aa7.14□□□□□ -1.27
CTCF-202ENST00000401394 FCGBPQ9Y6R7 5405 aaPredicted RBP7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 218.5 ms