RNA–Protein interactions for RNA: ENST00000394597.6

RFFL-202, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFFL, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-202ENST00000394597 M0QZ58 72 aa2.96□□□□□ -1.94
RFFL-202ENST00000394597 KRTAP10-4P60372 401 aaPredicted RBP2.96□□□□□ -1.94
RFFL-202ENST00000394597 LCE2AQ5TA79 106 aaPredicted RBP2.96□□□□□ -1.94
RFFL-202ENST00000394597 DNAH17Q9UFH2 4485 aa2.96□□□□□ -1.94
RFFL-202ENST00000394597 KRTAP15-1Q3LI76 137 aa2.94□□□□□ -1.94
RFFL-202ENST00000394597 DNAH11Q96DT5 4516 aa2.94□□□□□ -1.94
RFFL-202ENST00000394597 DNAH5Q8TE73 4624 aa2.93□□□□□ -1.94
RFFL-202ENST00000394597 FRAS1Q86XX4 4008 aa2.91□□□□□ -1.94
RFFL-202ENST00000394597 MT1HL1P0DM35 61 aa2.9□□□□□ -1.95
RFFL-202ENST00000394597 DNAH2Q9P225 4427 aa2.9□□□□□ -1.95
RFFL-202ENST00000394597 HECTD4Q9Y4D8 3996 aa2.89□□□□□ -1.95
RFFL-202ENST00000394597 DNAH6Q9C0G6 4158 aa2.89□□□□□ -1.95
RFFL-202ENST00000394597 KMT2AQ03164 3969 aa2.89□□□□□ -1.95
RFFL-202ENST00000394597 DYNC1H1Q14204 4646 aaKnown RBP2.88□□□□□ -1.95
RFFL-202ENST00000394597 KRTAP12-2P59991 146 aa2.87□□□□□ -1.95
RFFL-202ENST00000394597 LRP1BQ9NZR2 4599 aa2.86□□□□□ -1.95
RFFL-202ENST00000394597 KRTAP4-5Q9BYR2 181 aa2.86□□□□□ -1.95
RFFL-202ENST00000394597 KRTAP3-1Q9BYR8 98 aa2.86□□□□□ -1.95
RFFL-202ENST00000394597 LORP23490 312 aaPredicted RBP2.85□□□□□ -1.95
RFFL-202ENST00000394597 KRTAP13-4Q3LI77 160 aa2.84□□□□□ -1.95
RFFL-202ENST00000394597 DNAH8Q96JB1 4490 aa2.83□□□□□ -1.96
RFFL-202ENST00000394597 PP632Q6XCG6 107 aa2.82□□□□□ -1.96
RFFL-202ENST00000394597 FAT2Q9NYQ8 4349 aa2.82□□□□□ -1.96
RFFL-202ENST00000394597 KRTAP12-1P59990 96 aa2.82□□□□□ -1.96
RFFL-202ENST00000394597 KMT2CQ8NEZ4 4911 aaKnown RBP2.81□□□□□ -1.96
RFFL-202ENST00000394597 SACSQ9NZJ4 4579 aa2.81□□□□□ -1.96
RFFL-202ENST00000394597 FAT1Q14517 4588 aa2.81□□□□□ -1.96
RFFL-202ENST00000394597 KRTAP10-6P60371 365 aaPredicted RBP2.81□□□□□ -1.96
RFFL-202ENST00000394597 PKD1P98161 4303 aa2.78□□□□□ -1.96
RFFL-202ENST00000394597 HYDINQ4G0P3 5121 aa2.78□□□□□ -1.96
RFFL-202ENST00000394597 RYR2Q92736 4967 aa2.77□□□□□ -1.97
RFFL-202ENST00000394597 VPS13BQ7Z7G8 4022 aa2.75□□□□□ -1.97
RFFL-202ENST00000394597 TNP1P09430 55 aa2.75□□□□□ -1.97
RFFL-202ENST00000394597 RYR3Q15413 4870 aa2.75□□□□□ -1.97
RFFL-202ENST00000394597 APOBP04114 4563 aaKnown RBP2.73□□□□□ -1.97
RFFL-202ENST00000394597 KRTAP23-1A1A580 65 aa2.73□□□□□ -1.97
RFFL-202ENST00000394597 KRTAP10-10P60014 251 aa2.71□□□□□ -1.98
RFFL-202ENST00000394597 RYR1P21817 5038 aa2.71□□□□□ -1.98
RFFL-202ENST00000394597 KIAA1109Q2LD37 5005 aa2.71□□□□□ -1.98
RFFL-202ENST00000394597 KRTAP17-1Q9BYP8 105 aa2.7□□□□□ -1.98
RFFL-202ENST00000394597 EPPK1P58107 5090 aaKnown RBP2.7□□□□□ -1.98
RFFL-202ENST00000394597 PKHD1P08F94 4074 aa2.67□□□□□ -1.98
RFFL-202ENST00000394597 PRO2289Q9P1D8 64 aa2.66□□□□□ -1.98
RFFL-202ENST00000394597 HSPG2P98160 4391 aa2.64□□□□□ -1.99
RFFL-202ENST00000394597 LRP1Q07954 4544 aaKnown RBP2.64□□□□□ -1.99
RFFL-202ENST00000394597 PKHD1L1Q86WI1 4243 aa2.61□□□□□ -1.99
RFFL-202ENST00000394597 FAT3Q8TDW7 4589 aa2.6□□□□□ -1.99
RFFL-202ENST00000394597 INE1O15225 51 aa2.6□□□□□ -1.99
RFFL-202ENST00000394597 KRTAP4-1Q9BYQ7 146 aa2.59□□□□□ -1.99
RFFL-202ENST00000394597 BIRC6Q9NR09 4857 aa2.59□□□□□ -1.99
RFFL-202ENST00000394597 LOC100996750A0A140TA64 210 aa2.59□□□□□ -1.99
RFFL-202ENST00000394597 KRTAP4-6Q9BYQ5 205 aa2.59□□□□□ -1.99
RFFL-202ENST00000394597 MYCBP2O75592 4640 aa2.57□□□□□ -2
RFFL-202ENST00000394597 PCLOQ9Y6V0 5065 aa2.57□□□□□ -2
RFFL-202ENST00000394597 HERC2O95714 4834 aa2.57□□□□□ -2
RFFL-202ENST00000394597 TNXBP22105 4242 aa2.54□□□□□ -2
RFFL-202ENST00000394597 HERC1Q15751 4861 aa2.5□□□□□ -2.01
RFFL-202ENST00000394597 ABCA13Q86UQ4 5058 aa2.48□□□□□ -2.01
RFFL-202ENST00000394597 UBR4Q5T4S7 5183 aa2.47□□□□□ -2.01
RFFL-202ENST00000394597 MT1HP80294 61 aa2.47□□□□□ -2.01
RFFL-202ENST00000394597 LRP2P98164 4655 aa2.47□□□□□ -2.01
RFFL-202ENST00000394597 LPAP08519 4548 aa2.45□□□□□ -2.02
RFFL-202ENST00000394597 MT2AP02795 61 aa2.4□□□□□ -2.02
RFFL-202ENST00000394597 RNF213Q63HN8 5207 aa2.4□□□□□ -2.03
RFFL-202ENST00000394597 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.39□□□□□ -2.03
RFFL-202ENST00000394597 KRTAP4-8Q9BYQ9 185 aa2.39□□□□□ -2.03
RFFL-202ENST00000394597 SPRR2GQ9BYE4 73 aa2.38□□□□□ -2.03
RFFL-202ENST00000394597 KRTAP9-2Q9BYQ4 174 aa2.37□□□□□ -2.03
RFFL-202ENST00000394597 MT1FP04733 61 aa2.37□□□□□ -2.03
RFFL-202ENST00000394597 FSIP2Q5CZC0 6907 aa2.36□□□□□ -2.03
RFFL-202ENST00000394597 KRTAP9-6A0A140TA67 174 aa2.34□□□□□ -2.03
RFFL-202ENST00000394597 KRTAP19-2Q3LHN2 52 aa2.34□□□□□ -2.03
RFFL-202ENST00000394597 LCE3AQ5TA76 89 aa2.34□□□□□ -2.04
RFFL-202ENST00000394597 CRCT1Q9UGL9 99 aa2.34□□□□□ -2.04
RFFL-202ENST00000394597 KRTAP4-12Q9BQ66 201 aa2.33□□□□□ -2.04
RFFL-202ENST00000394597 MUC17Q685J3 4493 aa2.33□□□□□ -2.04
RFFL-202ENST00000394597 KRTAP19-1Q8IUB9 90 aa2.32□□□□□ -2.04
RFFL-202ENST00000394597 KRTAP10-12P60413 245 aa2.31□□□□□ -2.04
RFFL-202ENST00000394597 SPRR5A0A1B0GTR4 108 aa2.31□□□□□ -2.04
RFFL-202ENST00000394597 KRTAP9-8Q9BYQ0 159 aa2.3□□□□□ -2.04
RFFL-202ENST00000394597 KRTAP12-3P60328 96 aa2.29□□□□□ -2.04
RFFL-202ENST00000394597 HMCN2Q8NDA2 5059 aa2.28□□□□□ -2.04
RFFL-202ENST00000394597 FLGP20930 4061 aaPredicted RBP2.28□□□□□ -2.04
RFFL-202ENST00000394597 KRTAP19-8Q3LI54 63 aa2.27□□□□□ -2.05
RFFL-202ENST00000394597 KRTAP9-9Q9BYP9 154 aa2.26□□□□□ -2.05
RFFL-202ENST00000394597 KRTAP9-4Q9BYQ2 154 aa2.26□□□□□ -2.05
RFFL-202ENST00000394597 MUC2Q02817 5179 aa2.25□□□□□ -2.05
RFFL-202ENST00000394597 KRTAP9-3Q9BYQ3 159 aa2.23□□□□□ -2.05
RFFL-202ENST00000394597 FAT4Q6V0I7 4981 aa2.22□□□□□ -2.05
RFFL-202ENST00000394597 MT1BP07438 61 aa2.21□□□□□ -2.06
RFFL-202ENST00000394597 SYNE1Q8NF91 8797 aaKnown RBP2.21□□□□□ -2.06
RFFL-202ENST00000394597 LCE3BQ5TA77 95 aa2.19□□□□□ -2.06
RFFL-202ENST00000394597 MT1XP80297 61 aa2.18□□□□□ -2.06
RFFL-202ENST00000394597 KRTAP4-8A0A0G2JLE6 195 aa2.17□□□□□ -2.06
RFFL-202ENST00000394597 LCE4AQ5TA78 99 aa2.17□□□□□ -2.06
RFFL-202ENST00000394597 KRTAP10-5P60370 271 aa2.17□□□□□ -2.06
RFFL-202ENST00000394597 KRTAP8-1Q8IUC2 63 aa2.17□□□□□ -2.06
RFFL-202ENST00000394597 KRTAP10-7P60409 375 aaPredicted RBP2.14□□□□□ -2.07
RFFL-202ENST00000394597 KRTAP19-5Q3LI72 72 aa2.11□□□□□ -2.07
RFFL-202ENST00000394597 KRTAP9-7A8MTY7 169 aa2.11□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 134.2 ms