RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 NDUFAF8A1L188 74 aa8.14□□□□□ -1.11
PCDH1-203ENST00000394536 KRTAP10-6P60371 365 aaPredicted RBP8.13□□□□□ -1.11
PCDH1-203ENST00000394536 CAMK2N1Q7Z7J9 78 aa8.12□□□□□ -1.11
PCDH1-203ENST00000394536 KRTAP10-4P60372 401 aaPredicted RBP8.12□□□□□ -1.11
PCDH1-203ENST00000394536 MYCBP2O75592 4640 aa8.1□□□□□ -1.11
PCDH1-203ENST00000394536 DYNC1H1Q14204 4646 aaKnown RBP8.09□□□□□ -1.11
PCDH1-203ENST00000394536 ALMS1Q8TCU4 4167 aa8.09□□□□□ -1.11
PCDH1-203ENST00000394536 KRTAP21-3Q3LHN1 58 aa8.07□□□□□ -1.12
PCDH1-203ENST00000394536 HYDINQ4G0P3 5121 aa8.07□□□□□ -1.12
PCDH1-203ENST00000394536 KRTAP12-2P59991 146 aa8.06□□□□□ -1.12
PCDH1-203ENST00000394536 KRTAP3-3Q9BYR6 98 aa8.05□□□□□ -1.12
PCDH1-203ENST00000394536 TPRXLQ17RH7 258 aa8.04□□□□□ -1.12
PCDH1-203ENST00000394536 SEC61BP60468 96 aaKnown RBP8.03□□□□□ -1.12
PCDH1-203ENST00000394536 PKHD1P08F94 4074 aa8.02□□□□□ -1.13
PCDH1-203ENST00000394536 KRTAP3-2Q9BYR7 98 aa7.98□□□□□ -1.13
PCDH1-203ENST00000394536 A0A0A0MQY5 61 aa7.96□□□□□ -1.14
PCDH1-203ENST00000394536 KRTAP12-1P59990 96 aa7.92□□□□□ -1.14
PCDH1-203ENST00000394536 LRP1Q07954 4544 aaKnown RBP7.91□□□□□ -1.14
PCDH1-203ENST00000394536 SACSQ9NZJ4 4579 aa7.91□□□□□ -1.14
PCDH1-203ENST00000394536 LUZP6Q538Z0 58 aa7.86□□□□□ -1.15
PCDH1-203ENST00000394536 FAT2Q9NYQ8 4349 aa7.82□□□□□ -1.16
PCDH1-203ENST00000394536 APOBP04114 4563 aaKnown RBP7.82□□□□□ -1.16
PCDH1-203ENST00000394536 MT1HL1P0DM35 61 aa7.81□□□□□ -1.16
PCDH1-203ENST00000394536 FAT3Q8TDW7 4589 aa7.79□□□□□ -1.16
PCDH1-203ENST00000394536 PKD1P98161 4303 aa7.77□□□□□ -1.17
PCDH1-203ENST00000394536 M0R2T5 61 aa7.74□□□□□ -1.17
PCDH1-203ENST00000394536 KIAA1109Q2LD37 5005 aa7.72□□□□□ -1.17
PCDH1-203ENST00000394536 PLAC4Q8WY50 150 aa7.67□□□□□ -1.18
PCDH1-203ENST00000394536 RYR1P21817 5038 aa7.67□□□□□ -1.18
PCDH1-203ENST00000394536 KRTAP15-1Q3LI76 137 aa7.6□□□□□ -1.19
PCDH1-203ENST00000394536 KRTAP4-5Q9BYR2 181 aa7.6□□□□□ -1.19
PCDH1-203ENST00000394536 KMT2CQ8NEZ4 4911 aaKnown RBP7.56□□□□□ -1.2
PCDH1-203ENST00000394536 RYR3Q15413 4870 aa7.56□□□□□ -1.2
PCDH1-203ENST00000394536 LRP2P98164 4655 aa7.56□□□□□ -1.2
PCDH1-203ENST00000394536 HSPG2P98160 4391 aa7.53□□□□□ -1.2
PCDH1-203ENST00000394536 KRTAP17-1Q9BYP8 105 aa7.53□□□□□ -1.2
PCDH1-203ENST00000394536 LORP23490 312 aaPredicted RBP7.51□□□□□ -1.21
PCDH1-203ENST00000394536 TNP1P09430 55 aa7.49□□□□□ -1.21
PCDH1-203ENST00000394536 RYR2Q92736 4967 aa7.46□□□□□ -1.22
PCDH1-203ENST00000394536 PP632Q6XCG6 107 aa7.41□□□□□ -1.22
PCDH1-203ENST00000394536 PKHD1L1Q86WI1 4243 aa7.34□□□□□ -1.23
PCDH1-203ENST00000394536 KRTAP4-1Q9BYQ7 146 aa7.3□□□□□ -1.24
PCDH1-203ENST00000394536 LPAP08519 4548 aa7.28□□□□□ -1.24
PCDH1-203ENST00000394536 TNXBP22105 4242 aa7.23□□□□□ -1.25
PCDH1-203ENST00000394536 KRTAP10-10P60014 251 aa7.18□□□□□ -1.26
PCDH1-203ENST00000394536 ABCA13Q86UQ4 5058 aa7.02□□□□□ -1.29
PCDH1-203ENST00000394536 HERC2O95714 4834 aa7.01□□□□□ -1.29
PCDH1-203ENST00000394536 EPPK1P58107 5090 aaKnown RBP7.01□□□□□ -1.29
PCDH1-203ENST00000394536 MUC2Q02817 5179 aa6.94□□□□□ -1.3
PCDH1-203ENST00000394536 LCE3AQ5TA76 89 aa6.77□□□□□ -1.33
PCDH1-203ENST00000394536 KRTAP19-2Q3LHN2 52 aa6.67□□□□□ -1.34
PCDH1-203ENST00000394536 FAT4Q6V0I7 4981 aa6.65□□□□□ -1.34
PCDH1-203ENST00000394536 KRTAP23-1A1A580 65 aa6.63□□□□□ -1.35
PCDH1-203ENST00000394536 MUC17Q685J3 4493 aa6.62□□□□□ -1.35
PCDH1-203ENST00000394536 PRO2289Q9P1D8 64 aa6.6□□□□□ -1.35
PCDH1-203ENST00000394536 HERC1Q15751 4861 aa6.6□□□□□ -1.35
PCDH1-203ENST00000394536 SPRR2GQ9BYE4 73 aa6.59□□□□□ -1.35
PCDH1-203ENST00000394536 MT1HP80294 61 aa6.57□□□□□ -1.36
PCDH1-203ENST00000394536 KRTAP19-1Q8IUB9 90 aa6.57□□□□□ -1.36
PCDH1-203ENST00000394536 RNF213Q63HN8 5207 aa6.56□□□□□ -1.36
PCDH1-203ENST00000394536 KRTAP10-12P60413 245 aa6.56□□□□□ -1.36
PCDH1-203ENST00000394536 MT1FP04733 61 aa6.55□□□□□ -1.36
PCDH1-203ENST00000394536 MT2AP02795 61 aa6.54□□□□□ -1.36
PCDH1-203ENST00000394536 FLGP20930 4061 aaPredicted RBP6.54□□□□□ -1.36
PCDH1-203ENST00000394536 KRTAP12-3P60328 96 aa6.53□□□□□ -1.36
PCDH1-203ENST00000394536 LCE2CQ5TA81 110 aa6.46□□□□□ -1.38
PCDH1-203ENST00000394536 PCLOQ9Y6V0 5065 aa6.4□□□□□ -1.39
PCDH1-203ENST00000394536 BIRC6Q9NR09 4857 aa6.39□□□□□ -1.39
PCDH1-203ENST00000394536 UBR4Q5T4S7 5183 aa6.31□□□□□ -1.4
PCDH1-203ENST00000394536 KRTAP8-1Q8IUC2 63 aa6.3□□□□□ -1.4
PCDH1-203ENST00000394536 SPRR5A0A1B0GTR4 108 aa6.28□□□□□ -1.4
PCDH1-203ENST00000394536 KRTAP9-8Q9BYQ0 159 aa6.27□□□□□ -1.41
PCDH1-203ENST00000394536 HMCN2Q8NDA2 5059 aa6.26□□□□□ -1.41
PCDH1-203ENST00000394536 KRTAP10-7P60409 375 aaPredicted RBP6.23□□□□□ -1.41
PCDH1-203ENST00000394536 MT1XP80297 61 aa6.22□□□□□ -1.41
PCDH1-203ENST00000394536 MT1BP07438 61 aa6.21□□□□□ -1.42
PCDH1-203ENST00000394536 KRTAP10-5P60370 271 aa6.2□□□□□ -1.42
PCDH1-203ENST00000394536 KRTAP19-8Q3LI54 63 aa6.19□□□□□ -1.42
PCDH1-203ENST00000394536 INE1O15225 51 aa6.18□□□□□ -1.42
PCDH1-203ENST00000394536 KRTAP19-5Q3LI72 72 aa6.1□□□□□ -1.43
PCDH1-203ENST00000394536 KRTAP9-3Q9BYQ3 159 aa6□□□□□ -1.45
PCDH1-203ENST00000394536 FSIP2Q5CZC0 6907 aa5.97□□□□□ -1.45
PCDH1-203ENST00000394536 KRTAP4-8A0A0G2JLE6 195 aa5.96□□□□□ -1.46
PCDH1-203ENST00000394536 KRTAP4-8Q9BYQ9 185 aa5.96□□□□□ -1.46
PCDH1-203ENST00000394536 LCE3CQ5T5A8 94 aa5.95□□□□□ -1.46
PCDH1-203ENST00000394536 CRCT1Q9UGL9 99 aa5.94□□□□□ -1.46
PCDH1-203ENST00000394536 USH2AO75445 5202 aa5.91□□□□□ -1.46
PCDH1-203ENST00000394536 LCE2BO14633 110 aa5.83□□□□□ -1.48
PCDH1-203ENST00000394536 KMT2DO14686 5537 aa5.83□□□□□ -1.48
PCDH1-203ENST00000394536 KRTAP4-7Q9BYR0 210 aa5.77□□□□□ -1.49
PCDH1-203ENST00000394536 OBSCNQ5VST9 7968 aa5.61□□□□□ -1.51
PCDH1-203ENST00000394536 SYNE1Q8NF91 8797 aaKnown RBP5.51□□□□□ -1.53
PCDH1-203ENST00000394536 DSTQ03001 7570 aaKnown RBP5.51□□□□□ -1.53
PCDH1-203ENST00000394536 KRTAP9-6A8MVA2 160 aa5.5□□□□□ -1.53
PCDH1-203ENST00000394536 KRTAP19-7Q3SYF9 63 aa5.47□□□□□ -1.53
PCDH1-203ENST00000394536 MT1GP13640 62 aa5.44□□□□□ -1.54
PCDH1-203ENST00000394536 MT1LQ93083 61 aa5.44□□□□□ -1.54
PCDH1-203ENST00000394536 FCGBPQ9Y6R7 5405 aaPredicted RBP5.44□□□□□ -1.54
PCDH1-203ENST00000394536 MT1EP04732 61 aa5.4□□□□□ -1.54
PCDH1-203ENST00000394536 LCE2AQ5TA79 106 aaPredicted RBP5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms