RNA–Protein interactions for RNA: ENST00000389194.6

LTN1-202, Transcript of listerin E3 ubiquitin protein ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LTN1, Length 7,749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTN1-202ENST00000389194 DNHD1Q96M86 4753 aa2.36□□□□□ -2.03
LTN1-202ENST00000389194 DNAH8Q96JB1 4490 aa2.34□□□□□ -2.04
LTN1-202ENST00000389194 FAT1Q14517 4588 aa2.33□□□□□ -2.04
LTN1-202ENST00000389194 PRKDCP78527 4128 aaKnown RBP2.32□□□□□ -2.04
LTN1-202ENST00000389194 KRTAP3-3Q9BYR6 98 aa2.32□□□□□ -2.04
LTN1-202ENST00000389194 DNAH5Q8TE73 4624 aa2.32□□□□□ -2.04
LTN1-202ENST00000389194 MT1HL1P0DM35 61 aa2.32□□□□□ -2.04
LTN1-202ENST00000389194 VPS13BQ7Z7G8 4022 aa2.31□□□□□ -2.04
LTN1-202ENST00000389194 DNAH2Q9P225 4427 aa2.31□□□□□ -2.04
LTN1-202ENST00000389194 KRTAP3-2Q9BYR7 98 aa2.31□□□□□ -2.04
LTN1-202ENST00000389194 MYCBP2O75592 4640 aa2.31□□□□□ -2.04
LTN1-202ENST00000389194 STARD9Q9P2P6 4700 aa2.3□□□□□ -2.04
LTN1-202ENST00000389194 PRO2289Q9P1D8 64 aa2.3□□□□□ -2.04
LTN1-202ENST00000389194 LORP23490 312 aaPredicted RBP2.28□□□□□ -2.04
LTN1-202ENST00000389194 CMYA5Q8N3K9 4069 aa2.28□□□□□ -2.05
LTN1-202ENST00000389194 KRTAP10-4P60372 401 aaPredicted RBP2.27□□□□□ -2.05
LTN1-202ENST00000389194 FAT3Q8TDW7 4589 aa2.26□□□□□ -2.05
LTN1-202ENST00000389194 CRCT1Q9UGL9 99 aa2.26□□□□□ -2.05
LTN1-202ENST00000389194 DNAH7Q8WXX0 4024 aa2.26□□□□□ -2.05
LTN1-202ENST00000389194 KRTAP15-1Q3LI76 137 aa2.26□□□□□ -2.05
LTN1-202ENST00000389194 DNAH6Q9C0G6 4158 aa2.25□□□□□ -2.05
LTN1-202ENST00000389194 RYR1P21817 5038 aa2.24□□□□□ -2.05
LTN1-202ENST00000389194 LRP1BQ9NZR2 4599 aa2.23□□□□□ -2.05
LTN1-202ENST00000389194 DNAH17Q9UFH2 4485 aa2.22□□□□□ -2.05
LTN1-202ENST00000389194 VPS13DQ5THJ4 4388 aa2.21□□□□□ -2.06
LTN1-202ENST00000389194 APOBP04114 4563 aaKnown RBP2.19□□□□□ -2.06
LTN1-202ENST00000389194 DYNC1H1Q14204 4646 aaKnown RBP2.18□□□□□ -2.06
LTN1-202ENST00000389194 LRP1Q07954 4544 aaKnown RBP2.18□□□□□ -2.06
LTN1-202ENST00000389194 DNAH3Q8TD57 4116 aa2.18□□□□□ -2.06
LTN1-202ENST00000389194 SACSQ9NZJ4 4579 aa2.18□□□□□ -2.06
LTN1-202ENST00000389194 ALMS1Q8TCU4 4167 aa2.17□□□□□ -2.06
LTN1-202ENST00000389194 KRTAP4-1Q9BYQ7 146 aa2.17□□□□□ -2.06
LTN1-202ENST00000389194 LCE3AQ5TA76 89 aa2.16□□□□□ -2.06
LTN1-202ENST00000389194 HECTD4Q9Y4D8 3996 aa2.16□□□□□ -2.06
LTN1-202ENST00000389194 KRTAP10-12P60413 245 aa2.16□□□□□ -2.06
LTN1-202ENST00000389194 PKHD1P08F94 4074 aa2.15□□□□□ -2.07
LTN1-202ENST00000389194 FAT2Q9NYQ8 4349 aa2.15□□□□□ -2.07
LTN1-202ENST00000389194 DYNC2H1Q8NCM8 4307 aaKnown RBP2.12□□□□□ -2.07
LTN1-202ENST00000389194 KRTAP12-3P60328 96 aa2.11□□□□□ -2.07
LTN1-202ENST00000389194 LRP2P98164 4655 aa2.09□□□□□ -2.08
LTN1-202ENST00000389194 KIAA1109Q2LD37 5005 aa2.09□□□□□ -2.08
LTN1-202ENST00000389194 HYDINQ4G0P3 5121 aa2.08□□□□□ -2.08
LTN1-202ENST00000389194 LPAP08519 4548 aa2.07□□□□□ -2.08
LTN1-202ENST00000389194 RYR3Q15413 4870 aa2.07□□□□□ -2.08
LTN1-202ENST00000389194 KRTAP10-5P60370 271 aa2.02□□□□□ -2.09
LTN1-202ENST00000389194 MT1HP80294 61 aa2.01□□□□□ -2.09
LTN1-202ENST00000389194 MT1FP04733 61 aa1.99□□□□□ -2.09
LTN1-202ENST00000389194 MT2AP02795 61 aa1.99□□□□□ -2.09
LTN1-202ENST00000389194 HSPG2P98160 4391 aa1.98□□□□□ -2.09
LTN1-202ENST00000389194 KRTAP8-1Q8IUC2 63 aa1.97□□□□□ -2.09
LTN1-202ENST00000389194 KMT2CQ8NEZ4 4911 aaKnown RBP1.97□□□□□ -2.09
LTN1-202ENST00000389194 INE1O15225 51 aa1.97□□□□□ -2.09
LTN1-202ENST00000389194 FSIP2Q5CZC0 6907 aa1.95□□□□□ -2.1
LTN1-202ENST00000389194 KRTAP19-5Q3LI72 72 aa1.94□□□□□ -2.1
LTN1-202ENST00000389194 HERC2O95714 4834 aa1.93□□□□□ -2.1
LTN1-202ENST00000389194 SPRR2GQ9BYE4 73 aa1.92□□□□□ -2.1
LTN1-202ENST00000389194 PKD1P98161 4303 aa1.92□□□□□ -2.1
LTN1-202ENST00000389194 KRTAP10-7P60409 375 aaPredicted RBP1.92□□□□□ -2.1
LTN1-202ENST00000389194 KRTAP23-1A1A580 65 aa1.9□□□□□ -2.11
LTN1-202ENST00000389194 LCE2DQ5TA82 110 aaPredicted RBP1.89□□□□□ -2.11
LTN1-202ENST00000389194 PKHD1L1Q86WI1 4243 aa1.89□□□□□ -2.11
LTN1-202ENST00000389194 KRTAP19-1Q8IUB9 90 aa1.88□□□□□ -2.11
LTN1-202ENST00000389194 SPRR2FQ96RM1 72 aa1.88□□□□□ -2.11
LTN1-202ENST00000389194 PCLOQ9Y6V0 5065 aa1.88□□□□□ -2.11
LTN1-202ENST00000389194 KRTAP4-8A0A0G2JLE6 195 aa1.87□□□□□ -2.11
LTN1-202ENST00000389194 KRTAP4-8Q9BYQ9 185 aa1.87□□□□□ -2.11
LTN1-202ENST00000389194 RYR2Q92736 4967 aa1.87□□□□□ -2.11
LTN1-202ENST00000389194 TNXBP22105 4242 aa1.87□□□□□ -2.11
LTN1-202ENST00000389194 EPPK1P58107 5090 aaKnown RBP1.86□□□□□ -2.11
LTN1-202ENST00000389194 MUC2Q02817 5179 aa1.86□□□□□ -2.11
LTN1-202ENST00000389194 LCE3CQ5T5A8 94 aa1.85□□□□□ -2.11
LTN1-202ENST00000389194 MT1XP80297 61 aa1.82□□□□□ -2.12
LTN1-202ENST00000389194 KRTAP4-7Q9BYR0 210 aa1.81□□□□□ -2.12
LTN1-202ENST00000389194 LCE3BQ5TA77 95 aa1.81□□□□□ -2.12
LTN1-202ENST00000389194 UBR4Q5T4S7 5183 aa1.8□□□□□ -2.12
LTN1-202ENST00000389194 MT1GP13640 62 aa1.8□□□□□ -2.12
LTN1-202ENST00000389194 KRTAP9-8Q9BYQ0 159 aa1.8□□□□□ -2.12
LTN1-202ENST00000389194 MT1BP07438 61 aa1.8□□□□□ -2.12
LTN1-202ENST00000389194 SYNE1Q8NF91 8797 aaKnown RBP1.8□□□□□ -2.12
LTN1-202ENST00000389194 OBSCNQ5VST9 7968 aa1.8□□□□□ -2.12
LTN1-202ENST00000389194 HERC1Q15751 4861 aa1.79□□□□□ -2.12
LTN1-202ENST00000389194 LCE2CQ5TA81 110 aa1.79□□□□□ -2.12
LTN1-202ENST00000389194 FLGP20930 4061 aaPredicted RBP1.78□□□□□ -2.12
LTN1-202ENST00000389194 BIRC6Q9NR09 4857 aa1.77□□□□□ -2.13
LTN1-202ENST00000389194 FAT4Q6V0I7 4981 aa1.77□□□□□ -2.13
LTN1-202ENST00000389194 ABCA13Q86UQ4 5058 aa1.76□□□□□ -2.13
LTN1-202ENST00000389194 RNF213Q63HN8 5207 aa1.76□□□□□ -2.13
LTN1-202ENST00000389194 KRTAP19-8Q3LI54 63 aa1.75□□□□□ -2.13
LTN1-202ENST00000389194 SYNE2Q8WXH0 6885 aaKnown RBP1.74□□□□□ -2.13
LTN1-202ENST00000389194 KRTAP9-3Q9BYQ3 159 aa1.73□□□□□ -2.13
LTN1-202ENST00000389194 MUC17Q685J3 4493 aa1.73□□□□□ -2.13
LTN1-202ENST00000389194 KRTAP12-4P60329 112 aa1.73□□□□□ -2.13
LTN1-202ENST00000389194 LCE2BO14633 110 aa1.72□□□□□ -2.13
LTN1-202ENST00000389194 SPRR2EP22531 72 aa1.72□□□□□ -2.13
LTN1-202ENST00000389194 SPRR2BP35325 72 aa1.72□□□□□ -2.13
LTN1-202ENST00000389194 SPRR2AP35326 72 aa1.72□□□□□ -2.13
LTN1-202ENST00000389194 HMCN2Q8NDA2 5059 aa1.72□□□□□ -2.13
LTN1-202ENST00000389194 KRTAP19-2Q3LHN2 52 aa1.71□□□□□ -2.14
LTN1-202ENST00000389194 LOC100996750A0A140TA64 210 aa1.7□□□□□ -2.14
LTN1-202ENST00000389194 KRTAP4-3Q9BYR4 195 aa1.69□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms