RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 CAMK2N1Q7Z7J9 78 aa6.05□□□□□ -1.44
NEDD9-201ENST00000379433 HRES1P13985 223 aa6.01□□□□□ -1.45
NEDD9-201ENST00000379433 EPPK1P58107 5090 aaKnown RBP6□□□□□ -1.45
NEDD9-201ENST00000379433 KRTAP10-4P60372 401 aaPredicted RBP6□□□□□ -1.45
NEDD9-201ENST00000379433 FAT3Q8TDW7 4589 aa5.99□□□□□ -1.45
NEDD9-201ENST00000379433 Q8N1X5 172 aa5.98□□□□□ -1.45
NEDD9-201ENST00000379433 KRTAP17-1Q9BYP8 105 aa5.97□□□□□ -1.45
NEDD9-201ENST00000379433 HSPG2P98160 4391 aa5.96□□□□□ -1.46
NEDD9-201ENST00000379433 KRTAP15-1Q3LI76 137 aa5.94□□□□□ -1.46
NEDD9-201ENST00000379433 RYR1P21817 5038 aa5.93□□□□□ -1.46
NEDD9-201ENST00000379433 PKHD1L1Q86WI1 4243 aa5.92□□□□□ -1.46
NEDD9-201ENST00000379433 KRTAP13-3Q3SY46 172 aa5.9□□□□□ -1.46
NEDD9-201ENST00000379433 KRTAP3-3Q9BYR6 98 aa5.9□□□□□ -1.47
NEDD9-201ENST00000379433 KRTAP3-2Q9BYR7 98 aa5.9□□□□□ -1.47
NEDD9-201ENST00000379433 ACYP2P14621 99 aa5.86□□□□□ -1.47
NEDD9-201ENST00000379433 KRTAP4-5Q9BYR2 181 aa5.84□□□□□ -1.47
NEDD9-201ENST00000379433 RPS29P62273 56 aaKnown RBP5.79□□□□□ -1.48
NEDD9-201ENST00000379433 TNXBP22105 4242 aa5.79□□□□□ -1.48
NEDD9-201ENST00000379433 KRTAP23-1A1A580 65 aa5.79□□□□□ -1.48
NEDD9-201ENST00000379433 KRTAP10-8P60410 259 aa5.79□□□□□ -1.48
NEDD9-201ENST00000379433 LCE2DQ5TA82 110 aaPredicted RBP5.78□□□□□ -1.48
NEDD9-201ENST00000379433 ABCA13Q86UQ4 5058 aa5.78□□□□□ -1.48
NEDD9-201ENST00000379433 LPAP08519 4548 aa5.74□□□□□ -1.49
NEDD9-201ENST00000379433 LRP2P98164 4655 aa5.73□□□□□ -1.49
NEDD9-201ENST00000379433 MT1HL1P0DM35 61 aa5.72□□□□□ -1.49
NEDD9-201ENST00000379433 BIRC6Q9NR09 4857 aa5.7□□□□□ -1.5
NEDD9-201ENST00000379433 XP32Q5T750 250 aa5.69□□□□□ -1.5
NEDD9-201ENST00000379433 A0A1B0GU33 70 aa5.68□□□□□ -1.5
NEDD9-201ENST00000379433 HERC2O95714 4834 aa5.65□□□□□ -1.51
NEDD9-201ENST00000379433 KRTAP3-1Q9BYR8 98 aa5.64□□□□□ -1.51
NEDD9-201ENST00000379433 RPL37P61927 97 aaKnown RBP5.61□□□□□ -1.51
NEDD9-201ENST00000379433 MUC2Q02817 5179 aa5.6□□□□□ -1.51
NEDD9-201ENST00000379433 TPRXLQ17RH7 258 aa5.59□□□□□ -1.52
NEDD9-201ENST00000379433 R4GN34 69 aa5.59□□□□□ -1.52
NEDD9-201ENST00000379433 COX6B2Q6YFQ2 88 aa5.56□□□□□ -1.52
NEDD9-201ENST00000379433 C10orf95Q9H7T3 257 aa5.56□□□□□ -1.52
NEDD9-201ENST00000379433 H0YAA0 97 aa5.52□□□□□ -1.53
NEDD9-201ENST00000379433 HERC1Q15751 4861 aa5.52□□□□□ -1.53
NEDD9-201ENST00000379433 PCLOQ9Y6V0 5065 aa5.48□□□□□ -1.53
NEDD9-201ENST00000379433 PRO2289Q9P1D8 64 aa5.47□□□□□ -1.53
NEDD9-201ENST00000379433 S4R3F8 94 aa5.45□□□□□ -1.54
NEDD9-201ENST00000379433 A0A0D9SG42 100 aa5.43□□□□□ -1.54
NEDD9-201ENST00000379433 RNF213Q63HN8 5207 aa5.36□□□□□ -1.55
NEDD9-201ENST00000379433 H1FX-AS1Q4G0G2 97 aa5.36□□□□□ -1.55
NEDD9-201ENST00000379433 KRTAP4-1Q9BYQ7 146 aa5.34□□□□□ -1.55
NEDD9-201ENST00000379433 PLAC4Q8WY50 150 aa5.33□□□□□ -1.56
NEDD9-201ENST00000379433 FAT4Q6V0I7 4981 aa5.3□□□□□ -1.56
NEDD9-201ENST00000379433 KRTAP13-4Q3LI77 160 aa5.28□□□□□ -1.56
NEDD9-201ENST00000379433 KRTAP10-6P60371 365 aaPredicted RBP5.26□□□□□ -1.57
NEDD9-201ENST00000379433 LCE2CQ5TA81 110 aa5.26□□□□□ -1.57
NEDD9-201ENST00000379433 UBR4Q5T4S7 5183 aa5.25□□□□□ -1.57
NEDD9-201ENST00000379433 LCE2BO14633 110 aa5.25□□□□□ -1.57
NEDD9-201ENST00000379433 MUC17Q685J3 4493 aa5.19□□□□□ -1.58
NEDD9-201ENST00000379433 KRTAP9-6A0A140TA67 174 aa5.17□□□□□ -1.58
NEDD9-201ENST00000379433 HMCN2Q8NDA2 5059 aa5.17□□□□□ -1.58
NEDD9-201ENST00000379433 M0QZ58 72 aa5.16□□□□□ -1.58
NEDD9-201ENST00000379433 LORP23490 312 aaPredicted RBP5.12□□□□□ -1.59
NEDD9-201ENST00000379433 M0R2T5 61 aa5.11□□□□□ -1.59
NEDD9-201ENST00000379433 LCE2AQ5TA79 106 aaPredicted RBP5.11□□□□□ -1.59
NEDD9-201ENST00000379433 KRTAP12-2P59991 146 aa5.09□□□□□ -1.59
NEDD9-201ENST00000379433 INE1O15225 51 aa5.03□□□□□ -1.6
NEDD9-201ENST00000379433 KRTAP19-2Q3LHN2 52 aa5□□□□□ -1.61
NEDD9-201ENST00000379433 KRTAP12-1P59990 96 aa5□□□□□ -1.61
NEDD9-201ENST00000379433 FLGP20930 4061 aaPredicted RBP4.97□□□□□ -1.61
NEDD9-201ENST00000379433 KRTAP10-10P60014 251 aa4.84□□□□□ -1.64
NEDD9-201ENST00000379433 MT1HP80294 61 aa4.82□□□□□ -1.64
NEDD9-201ENST00000379433 PP632Q6XCG6 107 aa4.82□□□□□ -1.64
NEDD9-201ENST00000379433 KRTAP9-2Q9BYQ4 174 aa4.73□□□□□ -1.65
NEDD9-201ENST00000379433 USH2AO75445 5202 aa4.73□□□□□ -1.65
NEDD9-201ENST00000379433 MT1FP04733 61 aa4.72□□□□□ -1.65
NEDD9-201ENST00000379433 MT2AP02795 61 aa4.69□□□□□ -1.66
NEDD9-201ENST00000379433 FSIP2Q5CZC0 6907 aa4.69□□□□□ -1.66
NEDD9-201ENST00000379433 KRTAP19-1Q8IUB9 90 aa4.65□□□□□ -1.66
NEDD9-201ENST00000379433 KRTAP9-8Q9BYQ0 159 aa4.64□□□□□ -1.67
NEDD9-201ENST00000379433 SPRR2GQ9BYE4 73 aa4.57□□□□□ -1.68
NEDD9-201ENST00000379433 TNP1P09430 55 aa4.55□□□□□ -1.68
NEDD9-201ENST00000379433 SSPOA2VEC9 5147 aa4.54□□□□□ -1.68
NEDD9-201ENST00000379433 KMT2DO14686 5537 aa4.49□□□□□ -1.69
NEDD9-201ENST00000379433 MT1BP07438 61 aa4.43□□□□□ -1.7
NEDD9-201ENST00000379433 KRTAP9-3Q9BYQ3 159 aa4.43□□□□□ -1.7
NEDD9-201ENST00000379433 CRCT1Q9UGL9 99 aa4.43□□□□□ -1.7
NEDD9-201ENST00000379433 SPRR5A0A1B0GTR4 108 aa4.42□□□□□ -1.7
NEDD9-201ENST00000379433 LCE3AQ5TA76 89 aa4.38□□□□□ -1.71
NEDD9-201ENST00000379433 MT1XP80297 61 aa4.36□□□□□ -1.71
NEDD9-201ENST00000379433 KRTAP9-7A8MTY7 169 aa4.35□□□□□ -1.71
NEDD9-201ENST00000379433 KRTAP10-5P60370 271 aa4.35□□□□□ -1.71
NEDD9-201ENST00000379433 KRTAP19-8Q3LI54 63 aa4.35□□□□□ -1.71
NEDD9-201ENST00000379433 KRTAP10-7P60409 375 aaPredicted RBP4.32□□□□□ -1.72
NEDD9-201ENST00000379433 KRTAP10-12P60413 245 aa4.26□□□□□ -1.73
NEDD9-201ENST00000379433 KRTAP6-3Q3LI67 103 aa4.24□□□□□ -1.73
NEDD9-201ENST00000379433 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.24□□□□□ -1.73
NEDD9-201ENST00000379433 KRTAP4-8A0A0G2JLE6 195 aa4.21□□□□□ -1.74
NEDD9-201ENST00000379433 KRTAP4-8Q9BYQ9 185 aa4.21□□□□□ -1.74
NEDD9-201ENST00000379433 KRTAP12-3P60328 96 aa4.15□□□□□ -1.75
NEDD9-201ENST00000379433 MUC5BQ9HC84 5762 aaPredicted RBP4.11□□□□□ -1.75
NEDD9-201ENST00000379433 KRTAP19-5Q3LI72 72 aa4.09□□□□□ -1.76
NEDD9-201ENST00000379433 KRTAP8-1Q8IUC2 63 aa4.08□□□□□ -1.76
NEDD9-201ENST00000379433 MUC12Q9UKN1 5478 aa4.03□□□□□ -1.76
NEDD9-201ENST00000379433 DSTQ03001 7570 aaKnown RBP4.01□□□□□ -1.77
NEDD9-201ENST00000379433 KRTAP2-2Q9BYT5 123 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms