RNA–Protein interactions for RNA: ENST00000378676.1

SHROOM1-202, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 2,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-202ENST00000378676 RYR1P21817 5038 aa10.22□□□□□ -0.77
SHROOM1-202ENST00000378676 EPPK1P58107 5090 aaKnown RBP10.21□□□□□ -0.78
SHROOM1-202ENST00000378676 KRTAP25-1Q3LHN0 102 aa10.17□□□□□ -0.78
SHROOM1-202ENST00000378676 A0A1B0GU33 70 aa10.16□□□□□ -0.78
SHROOM1-202ENST00000378676 KRTAP17-1Q9BYP8 105 aa10.16□□□□□ -0.78
SHROOM1-202ENST00000378676 KIAA1109Q2LD37 5005 aa10.16□□□□□ -0.78
SHROOM1-202ENST00000378676 H1FX-AS1Q4G0G2 97 aa10.15□□□□□ -0.78
SHROOM1-202ENST00000378676 RPL37P61927 97 aaKnown RBP10.11□□□□□ -0.79
SHROOM1-202ENST00000378676 DMBT1Q9UGM3 2413 aaPredicted RBP10.09□□□□□ -0.79
SHROOM1-202ENST00000378676 XP32Q5T750 250 aa10.09□□□□□ -0.79
SHROOM1-202ENST00000378676 ROMO1P60602 79 aa10.06□□□□□ -0.8
SHROOM1-202ENST00000378676 MYCBP2O75592 4640 aa10.05□□□□□ -0.8
SHROOM1-202ENST00000378676 KRTAP3-3Q9BYR6 98 aa10.02□□□□□ -0.8
SHROOM1-202ENST00000378676 MT1HL1P0DM35 61 aa9.95□□□□□ -0.82
SHROOM1-202ENST00000378676 KRTAP10-6P60371 365 aaPredicted RBP9.92□□□□□ -0.82
SHROOM1-202ENST00000378676 S4R3F8 94 aa9.89□□□□□ -0.83
SHROOM1-202ENST00000378676 K7ERS5 55 aa9.89□□□□□ -0.83
SHROOM1-202ENST00000378676 KRTAP3-2Q9BYR7 98 aa9.87□□□□□ -0.83
SHROOM1-202ENST00000378676 KRTAP13-4Q3LI77 160 aa9.85□□□□□ -0.83
SHROOM1-202ENST00000378676 KRTAP4-5Q9BYR2 181 aa9.85□□□□□ -0.83
SHROOM1-202ENST00000378676 LPAP08519 4548 aa9.76□□□□□ -0.85
SHROOM1-202ENST00000378676 P0C880 135 aa9.74□□□□□ -0.85
SHROOM1-202ENST00000378676 LRP2P98164 4655 aa9.73□□□□□ -0.85
SHROOM1-202ENST00000378676 A0A0D9SG42 100 aa9.72□□□□□ -0.85
SHROOM1-202ENST00000378676 CRIPTQ9P021 101 aa9.72□□□□□ -0.85
SHROOM1-202ENST00000378676 BIRC6Q9NR09 4857 aa9.72□□□□□ -0.85
SHROOM1-202ENST00000378676 TPRXLQ17RH7 258 aa9.68□□□□□ -0.86
SHROOM1-202ENST00000378676 ABCA13Q86UQ4 5058 aa9.65□□□□□ -0.86
SHROOM1-202ENST00000378676 HERC2O95714 4834 aa9.65□□□□□ -0.86
SHROOM1-202ENST00000378676 J3QL48 77 aa9.54□□□□□ -0.88
SHROOM1-202ENST00000378676 SPINT4Q6UDR6 99 aa9.52□□□□□ -0.88
SHROOM1-202ENST00000378676 KRTAP12-2P59991 146 aa9.5□□□□□ -0.89
SHROOM1-202ENST00000378676 KRTAP12-1P59990 96 aa9.43□□□□□ -0.9
SHROOM1-202ENST00000378676 KRTAP15-1Q3LI76 137 aa9.39□□□□□ -0.91
SHROOM1-202ENST00000378676 MUC17Q685J3 4493 aa9.37□□□□□ -0.91
SHROOM1-202ENST00000378676 M0QZ58 72 aa9.34□□□□□ -0.91
SHROOM1-202ENST00000378676 C10orf95Q9H7T3 257 aa9.34□□□□□ -0.91
SHROOM1-202ENST00000378676 NDUFAF8A1L188 74 aa9.3□□□□□ -0.92
SHROOM1-202ENST00000378676 KRTAP4-1Q9BYQ7 146 aa9.3□□□□□ -0.92
SHROOM1-202ENST00000378676 SEC61BP60468 96 aaKnown RBP9.28□□□□□ -0.92
SHROOM1-202ENST00000378676 PCLOQ9Y6V0 5065 aa9.25□□□□□ -0.93
SHROOM1-202ENST00000378676 HERC1Q15751 4861 aa9.16□□□□□ -0.94
SHROOM1-202ENST00000378676 LORP23490 312 aaPredicted RBP9.16□□□□□ -0.94
SHROOM1-202ENST00000378676 R4GN34 69 aa9.15□□□□□ -0.94
SHROOM1-202ENST00000378676 KRTAP19-2Q3LHN2 52 aa9.12□□□□□ -0.95
SHROOM1-202ENST00000378676 HMCN2Q8NDA2 5059 aa9□□□□□ -0.97
SHROOM1-202ENST00000378676 MUC2Q02817 5179 aa8.89□□□□□ -0.99
SHROOM1-202ENST00000378676 FLGP20930 4061 aaPredicted RBP8.87□□□□□ -0.99
SHROOM1-202ENST00000378676 PLAC4Q8WY50 150 aa8.72□□□□□ -1.01
SHROOM1-202ENST00000378676 CAMK2N1Q7Z7J9 78 aa8.68□□□□□ -1.02
SHROOM1-202ENST00000378676 A0A0A0MQY5 61 aa8.63□□□□□ -1.03
SHROOM1-202ENST00000378676 LUZP6Q538Z0 58 aa8.61□□□□□ -1.03
SHROOM1-202ENST00000378676 UBR4Q5T4S7 5183 aa8.59□□□□□ -1.03
SHROOM1-202ENST00000378676 LCE2CQ5TA81 110 aa8.57□□□□□ -1.04
SHROOM1-202ENST00000378676 RNF213Q63HN8 5207 aa8.51□□□□□ -1.05
SHROOM1-202ENST00000378676 PP632Q6XCG6 107 aa8.49□□□□□ -1.05
SHROOM1-202ENST00000378676 FAT4Q6V0I7 4981 aa8.48□□□□□ -1.05
SHROOM1-202ENST00000378676 KRTAP19-1Q8IUB9 90 aa8.35□□□□□ -1.07
SHROOM1-202ENST00000378676 SPRR2GQ9BYE4 73 aa8.35□□□□□ -1.07
SHROOM1-202ENST00000378676 TNP1P09430 55 aa8.34□□□□□ -1.07
SHROOM1-202ENST00000378676 MT1HP80294 61 aa8.32□□□□□ -1.08
SHROOM1-202ENST00000378676 M0R2T5 61 aa8.3□□□□□ -1.08
SHROOM1-202ENST00000378676 MT1FP04733 61 aa8.21□□□□□ -1.1
SHROOM1-202ENST00000378676 KRTAP23-1A1A580 65 aa8.2□□□□□ -1.1
SHROOM1-202ENST00000378676 MT2AP02795 61 aa8.2□□□□□ -1.1
SHROOM1-202ENST00000378676 KRTAP10-10P60014 251 aa8.14□□□□□ -1.11
SHROOM1-202ENST00000378676 KRTAP9-8Q9BYQ0 159 aa8.13□□□□□ -1.11
SHROOM1-202ENST00000378676 SPRR5A0A1B0GTR4 108 aa8.11□□□□□ -1.11
SHROOM1-202ENST00000378676 KRTAP19-8Q3LI54 63 aa7.99□□□□□ -1.13
SHROOM1-202ENST00000378676 LCE3AQ5TA76 89 aa7.99□□□□□ -1.13
SHROOM1-202ENST00000378676 MT1BP07438 61 aa7.93□□□□□ -1.14
SHROOM1-202ENST00000378676 LCE2AQ5TA79 106 aaPredicted RBP7.9□□□□□ -1.15
SHROOM1-202ENST00000378676 KRTAP10-5P60370 271 aa7.86□□□□□ -1.15
SHROOM1-202ENST00000378676 MT1XP80297 61 aa7.85□□□□□ -1.15
SHROOM1-202ENST00000378676 KRTAP9-3Q9BYQ3 159 aa7.78□□□□□ -1.16
SHROOM1-202ENST00000378676 KRTAP8-1Q8IUC2 63 aa7.75□□□□□ -1.17
SHROOM1-202ENST00000378676 PRO2289Q9P1D8 64 aa7.71□□□□□ -1.18
SHROOM1-202ENST00000378676 KRTAP10-12P60413 245 aa7.67□□□□□ -1.18
SHROOM1-202ENST00000378676 KRTAP10-7P60409 375 aaPredicted RBP7.64□□□□□ -1.19
SHROOM1-202ENST00000378676 INE1O15225 51 aa7.58□□□□□ -1.2
SHROOM1-202ENST00000378676 KRTAP12-3P60328 96 aa7.57□□□□□ -1.2
SHROOM1-202ENST00000378676 LCE2BO14633 110 aa7.51□□□□□ -1.21
SHROOM1-202ENST00000378676 USH2AO75445 5202 aa7.34□□□□□ -1.23
SHROOM1-202ENST00000378676 KRTAP19-5Q3LI72 72 aa7.31□□□□□ -1.24
SHROOM1-202ENST00000378676 KMT2DO14686 5537 aa7.23□□□□□ -1.25
SHROOM1-202ENST00000378676 KRTAP4-8A0A0G2JLE6 195 aa7.18□□□□□ -1.26
SHROOM1-202ENST00000378676 KRTAP4-8Q9BYQ9 185 aa7.18□□□□□ -1.26
SHROOM1-202ENST00000378676 LCE3CQ5T5A8 94 aa7.12□□□□□ -1.27
SHROOM1-202ENST00000378676 LCE2DQ5TA82 110 aaPredicted RBP7.12□□□□□ -1.27
SHROOM1-202ENST00000378676 SSPOA2VEC9 5147 aa7.02□□□□□ -1.29
SHROOM1-202ENST00000378676 KRTAP19-7Q3SYF9 63 aa7.01□□□□□ -1.29
SHROOM1-202ENST00000378676 FSIP2Q5CZC0 6907 aa7□□□□□ -1.29
SHROOM1-202ENST00000378676 KRTAP19-6Q3LI70 58 aa7□□□□□ -1.29
SHROOM1-202ENST00000378676 KRTAP9-6A8MVA2 160 aa6.93□□□□□ -1.3
SHROOM1-202ENST00000378676 KRTAP4-7Q9BYR0 210 aa6.88□□□□□ -1.31
SHROOM1-202ENST00000378676 MT1EP04732 61 aa6.8□□□□□ -1.32
SHROOM1-202ENST00000378676 MT1LQ93083 61 aa6.79□□□□□ -1.32
SHROOM1-202ENST00000378676 KRTAP9-2Q9BYQ4 174 aa6.79□□□□□ -1.32
SHROOM1-202ENST00000378676 FCGBPQ9Y6R7 5405 aaPredicted RBP6.69□□□□□ -1.34
SHROOM1-202ENST00000378676 KRTAP19-4Q3LI73 84 aa6.65□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 96.2 ms