RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 KRTAP10-7P60409 375 aaPredicted RBP4.64□□□□□ -1.67
VPS13A-205ENST00000376636 KRTAP19-4Q3LI73 84 aa4.61□□□□□ -1.67
VPS13A-205ENST00000376636 LORP23490 312 aaPredicted RBP4.55□□□□□ -1.68
VPS13A-205ENST00000376636 LYSTQ99698 3801 aa4.51□□□□□ -1.69
VPS13A-205ENST00000376636 LCE3CQ5T5A8 94 aa4.51□□□□□ -1.69
VPS13A-205ENST00000376636 KRTAP10-4P60372 401 aaPredicted RBP4.49□□□□□ -1.69
VPS13A-205ENST00000376636 HUWE1Q7Z6Z7 4374 aaKnown RBP4.49□□□□□ -1.69
VPS13A-205ENST00000376636 ANK3Q12955 4377 aaKnown RBP4.45□□□□□ -1.7
VPS13A-205ENST00000376636 CMYA5Q8N3K9 4069 aa4.44□□□□□ -1.7
VPS13A-205ENST00000376636 SPRR2GQ9BYE4 73 aa4.42□□□□□ -1.7
VPS13A-205ENST00000376636 SPRR2FQ96RM1 72 aa4.42□□□□□ -1.7
VPS13A-205ENST00000376636 KRTAP19-5Q3LI72 72 aa4.4□□□□□ -1.71
VPS13A-205ENST00000376636 DNAH7Q8WXX0 4024 aa4.39□□□□□ -1.71
VPS13A-205ENST00000376636 KRTAP4-5Q9BYR2 181 aa4.38□□□□□ -1.71
VPS13A-205ENST00000376636 DNAH2Q9P225 4427 aa4.36□□□□□ -1.71
VPS13A-205ENST00000376636 DNAH3Q8TD57 4116 aa4.36□□□□□ -1.71
VPS13A-205ENST00000376636 ANK2Q01484 3957 aa4.34□□□□□ -1.71
VPS13A-205ENST00000376636 ZNF469Q96JG9 3925 aaPredicted RBP4.32□□□□□ -1.72
VPS13A-205ENST00000376636 MT1HP80294 61 aa4.29□□□□□ -1.72
VPS13A-205ENST00000376636 VPS13BQ7Z7G8 4022 aa4.28□□□□□ -1.72
VPS13A-205ENST00000376636 DNAH1Q9P2D7 4330 aa4.24□□□□□ -1.73
VPS13A-205ENST00000376636 FRAS1Q86XX4 4008 aa4.24□□□□□ -1.73
VPS13A-205ENST00000376636 LCE3BQ5TA77 95 aa4.24□□□□□ -1.73
VPS13A-205ENST00000376636 HECTD4Q9Y4D8 3996 aa4.24□□□□□ -1.73
VPS13A-205ENST00000376636 KRTAP12-4P60329 112 aa4.24□□□□□ -1.73
VPS13A-205ENST00000376636 DNAH6Q9C0G6 4158 aa4.22□□□□□ -1.73
VPS13A-205ENST00000376636 KMT2AQ03164 3969 aa4.22□□□□□ -1.73
VPS13A-205ENST00000376636 MT2AP02795 61 aa4.21□□□□□ -1.74
VPS13A-205ENST00000376636 SPRR2EP22531 72 aa4.12□□□□□ -1.75
VPS13A-205ENST00000376636 SPRR2BP35325 72 aa4.12□□□□□ -1.75
VPS13A-205ENST00000376636 SPRR2AP35326 72 aa4.12□□□□□ -1.75
VPS13A-205ENST00000376636 LCE3DQ9BYE3 92 aa4.08□□□□□ -1.76
VPS13A-205ENST00000376636 MT1FP04733 61 aa4.08□□□□□ -1.76
VPS13A-205ENST00000376636 KRTAP4-1Q9BYQ7 146 aa4.08□□□□□ -1.76
VPS13A-205ENST00000376636 LCE2BO14633 110 aa4.05□□□□□ -1.76
VPS13A-205ENST00000376636 DNAH9Q9NYC9 4486 aa4.03□□□□□ -1.76
VPS13A-205ENST00000376636 SPRR2DP22532 72 aa4.03□□□□□ -1.76
VPS13A-205ENST00000376636 LCE3EQ5T5B0 92 aa4.01□□□□□ -1.77
VPS13A-205ENST00000376636 DNAH8Q96JB1 4490 aa4□□□□□ -1.77
VPS13A-205ENST00000376636 MT3P25713 68 aa4□□□□□ -1.77
VPS13A-205ENST00000376636 MT1GP13640 62 aa3.99□□□□□ -1.77
VPS13A-205ENST00000376636 FLGP20930 4061 aaPredicted RBP3.97□□□□□ -1.77
VPS13A-205ENST00000376636 FAT2Q9NYQ8 4349 aa3.95□□□□□ -1.78
VPS13A-205ENST00000376636 DNAH17Q9UFH2 4485 aa3.91□□□□□ -1.78
VPS13A-205ENST00000376636 KRTAP19-8Q3LI54 63 aa3.9□□□□□ -1.78
VPS13A-205ENST00000376636 SPRR5A0A1B0GTR4 108 aa3.9□□□□□ -1.78
VPS13A-205ENST00000376636 DNAH10Q8IVF4 4471 aa3.88□□□□□ -1.79
VPS13A-205ENST00000376636 MT1XP80297 61 aa3.85□□□□□ -1.79
VPS13A-205ENST00000376636 PRKDCP78527 4128 aaKnown RBP3.83□□□□□ -1.8
VPS13A-205ENST00000376636 DNAH5Q8TE73 4624 aa3.82□□□□□ -1.8
VPS13A-205ENST00000376636 DNAH11Q96DT5 4516 aa3.81□□□□□ -1.8
VPS13A-205ENST00000376636 FAT1Q14517 4588 aa3.81□□□□□ -1.8
VPS13A-205ENST00000376636 DYNC2H1Q8NCM8 4307 aaKnown RBP3.8□□□□□ -1.8
VPS13A-205ENST00000376636 KRTAP19-1Q8IUB9 90 aa3.8□□□□□ -1.8
VPS13A-205ENST00000376636 LCE2CQ5TA81 110 aa3.79□□□□□ -1.8
VPS13A-205ENST00000376636 PRM1P04553 51 aa3.73□□□□□ -1.81
VPS13A-205ENST00000376636 MT1LQ93083 61 aa3.73□□□□□ -1.81
VPS13A-205ENST00000376636 LRP1BQ9NZR2 4599 aa3.72□□□□□ -1.81
VPS13A-205ENST00000376636 PLECQ15149 4684 aaKnown RBP3.71□□□□□ -1.82
VPS13A-205ENST00000376636 VPS13DQ5THJ4 4388 aa3.69□□□□□ -1.82
VPS13A-205ENST00000376636 LCE2DQ5TA82 110 aaPredicted RBP3.69□□□□□ -1.82
VPS13A-205ENST00000376636 KRTAP19-3Q7Z4W3 81 aa3.69□□□□□ -1.82
VPS13A-205ENST00000376636 STARD9Q9P2P6 4700 aa3.65□□□□□ -1.82
VPS13A-205ENST00000376636 LRP1Q07954 4544 aaKnown RBP3.64□□□□□ -1.83
VPS13A-205ENST00000376636 KRTAP4-8A0A0G2JLE6 195 aa3.62□□□□□ -1.83
VPS13A-205ENST00000376636 KRTAP4-8Q9BYQ9 185 aa3.62□□□□□ -1.83
VPS13A-205ENST00000376636 MT1BP07438 61 aa3.62□□□□□ -1.83
VPS13A-205ENST00000376636 PKHD1P08F94 4074 aa3.61□□□□□ -1.83
VPS13A-205ENST00000376636 KRTAP9-8Q9BYQ0 159 aa3.61□□□□□ -1.83
VPS13A-205ENST00000376636 PKHD1L1Q86WI1 4243 aa3.6□□□□□ -1.83
VPS13A-205ENST00000376636 PKD1P98161 4303 aa3.57□□□□□ -1.84
VPS13A-205ENST00000376636 SACSQ9NZJ4 4579 aa3.56□□□□□ -1.84
VPS13A-205ENST00000376636 APOBP04114 4563 aaKnown RBP3.56□□□□□ -1.84
VPS13A-205ENST00000376636 LCE1BQ5T7P3 118 aa3.53□□□□□ -1.84
VPS13A-205ENST00000376636 LCE1DQ5T752 114 aa3.53□□□□□ -1.84
VPS13A-205ENST00000376636 MT1EP04732 61 aa3.53□□□□□ -1.85
VPS13A-205ENST00000376636 MT4P47944 62 aa3.52□□□□□ -1.85
VPS13A-205ENST00000376636 FAT3Q8TDW7 4589 aa3.49□□□□□ -1.85
VPS13A-205ENST00000376636 KRTAP9-3Q9BYQ3 159 aa3.48□□□□□ -1.85
VPS13A-205ENST00000376636 DYNC1H1Q14204 4646 aaKnown RBP3.45□□□□□ -1.86
VPS13A-205ENST00000376636 MT1MQ8N339 61 aa3.44□□□□□ -1.86
VPS13A-205ENST00000376636 KRTAP4-7Q9BYR0 210 aa3.42□□□□□ -1.86
VPS13A-205ENST00000376636 KRTAP19-6Q3LI70 58 aa3.34□□□□□ -1.88
VPS13A-205ENST00000376636 HSPG2P98160 4391 aa3.33□□□□□ -1.88
VPS13A-205ENST00000376636 LOC100996750A0A140TA64 210 aa3.31□□□□□ -1.88
VPS13A-205ENST00000376636 LCE5AQ5TCM9 118 aa3.31□□□□□ -1.88
VPS13A-205ENST00000376636 TNXBP22105 4242 aa3.3□□□□□ -1.88
VPS13A-205ENST00000376636 KRTAP2-3P0C7H8 128 aa3.29□□□□□ -1.88
VPS13A-205ENST00000376636 KRTAP2-4Q9BYR9 128 aa3.29□□□□□ -1.88
VPS13A-205ENST00000376636 KRTAP2-1Q9BYU5 128 aa3.29□□□□□ -1.88
VPS13A-205ENST00000376636 MT1AP04731 61 aa3.28□□□□□ -1.89
VPS13A-205ENST00000376636 LPAP08519 4548 aa3.27□□□□□ -1.89
VPS13A-205ENST00000376636 MYCBP2O75592 4640 aa3.27□□□□□ -1.89
VPS13A-205ENST00000376636 KRTAP9-2Q9BYQ4 174 aa3.23□□□□□ -1.89
VPS13A-205ENST00000376636 KRTAP6-2Q3LI66 62 aa3.17□□□□□ -1.9
VPS13A-205ENST00000376636 SYNE2Q8WXH0 6885 aaKnown RBP3.17□□□□□ -1.9
VPS13A-205ENST00000376636 LCE1AQ5T7P2 110 aa3.16□□□□□ -1.9
VPS13A-205ENST00000376636 KRTAP4-3Q9BYR4 195 aa3.15□□□□□ -1.9
VPS13A-205ENST00000376636 KRTAP20-1Q3LI63 56 aa3.15□□□□□ -1.91
VPS13A-205ENST00000376636 LCE1CQ5T751 118 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms