RNA–Protein interactions for RNA: ENST00000376259.6

TNFRSF1B-201, Transcript of TNF receptor superfamily member 1B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFRSF1B, Length 3,683 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1B-201ENST00000376259 XP32Q5T750 250 aa7.42□□□□□ -1.22
TNFRSF1B-201ENST00000376259 SACSQ9NZJ4 4579 aa7.4□□□□□ -1.22
TNFRSF1B-201ENST00000376259 PKD1P98161 4303 aa7.39□□□□□ -1.23
TNFRSF1B-201ENST00000376259 DYNC1H1Q14204 4646 aaKnown RBP7.38□□□□□ -1.23
TNFRSF1B-201ENST00000376259 J3QL48 77 aa7.37□□□□□ -1.23
TNFRSF1B-201ENST00000376259 M0QZ58 72 aa7.36□□□□□ -1.23
TNFRSF1B-201ENST00000376259 LRP1Q07954 4544 aaKnown RBP7.35□□□□□ -1.23
TNFRSF1B-201ENST00000376259 A0A1B0GVY2 172 aa7.35□□□□□ -1.23
TNFRSF1B-201ENST00000376259 R4GN34 69 aa7.35□□□□□ -1.23
TNFRSF1B-201ENST00000376259 KRTAP13-4Q3LI77 160 aa7.34□□□□□ -1.23
TNFRSF1B-201ENST00000376259 FAT3Q8TDW7 4589 aa7.28□□□□□ -1.24
TNFRSF1B-201ENST00000376259 APOBP04114 4563 aaKnown RBP7.27□□□□□ -1.25
TNFRSF1B-201ENST00000376259 KIAA1109Q2LD37 5005 aa7.25□□□□□ -1.25
TNFRSF1B-201ENST00000376259 KRTAP10-4P60372 401 aaPredicted RBP7.24□□□□□ -1.25
TNFRSF1B-201ENST00000376259 KRTAP10-6P60371 365 aaPredicted RBP7.24□□□□□ -1.25
TNFRSF1B-201ENST00000376259 NDUFAF8A1L188 74 aa7.22□□□□□ -1.25
TNFRSF1B-201ENST00000376259 CAMK2N1Q7Z7J9 78 aa7.21□□□□□ -1.25
TNFRSF1B-201ENST00000376259 RYR3Q15413 4870 aa7.21□□□□□ -1.25
TNFRSF1B-201ENST00000376259 KRTAP12-2P59991 146 aa7.21□□□□□ -1.26
TNFRSF1B-201ENST00000376259 TPRXLQ17RH7 258 aa7.18□□□□□ -1.26
TNFRSF1B-201ENST00000376259 KRTAP3-3Q9BYR6 98 aa7.18□□□□□ -1.26
TNFRSF1B-201ENST00000376259 RYR2Q92736 4967 aa7.16□□□□□ -1.26
TNFRSF1B-201ENST00000376259 KRTAP3-2Q9BYR7 98 aa7.11□□□□□ -1.27
TNFRSF1B-201ENST00000376259 RYR1P21817 5038 aa7.08□□□□□ -1.28
TNFRSF1B-201ENST00000376259 SEC61BP60468 96 aaKnown RBP7.06□□□□□ -1.28
TNFRSF1B-201ENST00000376259 KRTAP17-1Q9BYP8 105 aa7.05□□□□□ -1.28
TNFRSF1B-201ENST00000376259 EPPK1P58107 5090 aaKnown RBP7.05□□□□□ -1.28
TNFRSF1B-201ENST00000376259 KRTAP12-1P59990 96 aa7.04□□□□□ -1.28
TNFRSF1B-201ENST00000376259 KRTAP21-3Q3LHN1 58 aa7.02□□□□□ -1.29
TNFRSF1B-201ENST00000376259 MT1HL1P0DM35 61 aa6.98□□□□□ -1.29
TNFRSF1B-201ENST00000376259 HSPG2P98160 4391 aa6.97□□□□□ -1.29
TNFRSF1B-201ENST00000376259 LRP2P98164 4655 aa6.97□□□□□ -1.29
TNFRSF1B-201ENST00000376259 PKHD1L1Q86WI1 4243 aa6.95□□□□□ -1.3
TNFRSF1B-201ENST00000376259 M0R2T5 61 aa6.94□□□□□ -1.3
TNFRSF1B-201ENST00000376259 KRTAP4-5Q9BYR2 181 aa6.94□□□□□ -1.3
TNFRSF1B-201ENST00000376259 LPAP08519 4548 aa6.92□□□□□ -1.3
TNFRSF1B-201ENST00000376259 LUZP6Q538Z0 58 aa6.89□□□□□ -1.31
TNFRSF1B-201ENST00000376259 ABCA13Q86UQ4 5058 aa6.89□□□□□ -1.31
TNFRSF1B-201ENST00000376259 LORP23490 312 aaPredicted RBP6.81□□□□□ -1.32
TNFRSF1B-201ENST00000376259 MUC2Q02817 5179 aa6.8□□□□□ -1.32
TNFRSF1B-201ENST00000376259 PLAC4Q8WY50 150 aa6.78□□□□□ -1.32
TNFRSF1B-201ENST00000376259 TNXBP22105 4242 aa6.71□□□□□ -1.33
TNFRSF1B-201ENST00000376259 KRTAP15-1Q3LI76 137 aa6.65□□□□□ -1.34
TNFRSF1B-201ENST00000376259 KRTAP4-1Q9BYQ7 146 aa6.61□□□□□ -1.35
TNFRSF1B-201ENST00000376259 HERC2O95714 4834 aa6.6□□□□□ -1.35
TNFRSF1B-201ENST00000376259 TNP1P09430 55 aa6.6□□□□□ -1.35
TNFRSF1B-201ENST00000376259 HERC1Q15751 4861 aa6.56□□□□□ -1.36
TNFRSF1B-201ENST00000376259 A0A0A0MQY5 61 aa6.5□□□□□ -1.37
TNFRSF1B-201ENST00000376259 RNF213Q63HN8 5207 aa6.5□□□□□ -1.37
TNFRSF1B-201ENST00000376259 FAT4Q6V0I7 4981 aa6.44□□□□□ -1.38
TNFRSF1B-201ENST00000376259 PCLOQ9Y6V0 5065 aa6.42□□□□□ -1.38
TNFRSF1B-201ENST00000376259 KRTAP10-10P60014 251 aa6.42□□□□□ -1.38
TNFRSF1B-201ENST00000376259 PP632Q6XCG6 107 aa6.42□□□□□ -1.38
TNFRSF1B-201ENST00000376259 UBR4Q5T4S7 5183 aa6.3□□□□□ -1.4
TNFRSF1B-201ENST00000376259 BIRC6Q9NR09 4857 aa6.15□□□□□ -1.43
TNFRSF1B-201ENST00000376259 HMCN2Q8NDA2 5059 aa6.08□□□□□ -1.44
TNFRSF1B-201ENST00000376259 MUC17Q685J3 4493 aa6.07□□□□□ -1.44
TNFRSF1B-201ENST00000376259 LCE3AQ5TA76 89 aa6.06□□□□□ -1.44
TNFRSF1B-201ENST00000376259 KRTAP19-2Q3LHN2 52 aa5.96□□□□□ -1.46
TNFRSF1B-201ENST00000376259 MT1FP04733 61 aa5.89□□□□□ -1.47
TNFRSF1B-201ENST00000376259 MT1HP80294 61 aa5.88□□□□□ -1.47
TNFRSF1B-201ENST00000376259 KRTAP19-1Q8IUB9 90 aa5.88□□□□□ -1.47
TNFRSF1B-201ENST00000376259 MT2AP02795 61 aa5.85□□□□□ -1.47
TNFRSF1B-201ENST00000376259 FLGP20930 4061 aaPredicted RBP5.85□□□□□ -1.47
TNFRSF1B-201ENST00000376259 FSIP2Q5CZC0 6907 aa5.83□□□□□ -1.48
TNFRSF1B-201ENST00000376259 KRTAP10-12P60413 245 aa5.82□□□□□ -1.48
TNFRSF1B-201ENST00000376259 SPRR2GQ9BYE4 73 aa5.81□□□□□ -1.48
TNFRSF1B-201ENST00000376259 USH2AO75445 5202 aa5.8□□□□□ -1.48
TNFRSF1B-201ENST00000376259 KRTAP12-3P60328 96 aa5.79□□□□□ -1.48
TNFRSF1B-201ENST00000376259 LCE2CQ5TA81 110 aa5.79□□□□□ -1.48
TNFRSF1B-201ENST00000376259 PRO2289Q9P1D8 64 aa5.76□□□□□ -1.49
TNFRSF1B-201ENST00000376259 KRTAP23-1A1A580 65 aa5.68□□□□□ -1.5
TNFRSF1B-201ENST00000376259 KRTAP10-7P60409 375 aaPredicted RBP5.62□□□□□ -1.51
TNFRSF1B-201ENST00000376259 KRTAP9-8Q9BYQ0 159 aa5.61□□□□□ -1.51
TNFRSF1B-201ENST00000376259 KMT2DO14686 5537 aa5.56□□□□□ -1.52
TNFRSF1B-201ENST00000376259 MT1XP80297 61 aa5.56□□□□□ -1.52
TNFRSF1B-201ENST00000376259 MT1BP07438 61 aa5.55□□□□□ -1.52
TNFRSF1B-201ENST00000376259 KRTAP10-5P60370 271 aa5.54□□□□□ -1.52
TNFRSF1B-201ENST00000376259 KRTAP8-1Q8IUC2 63 aa5.53□□□□□ -1.52
TNFRSF1B-201ENST00000376259 SPRR5A0A1B0GTR4 108 aa5.5□□□□□ -1.53
TNFRSF1B-201ENST00000376259 KRTAP19-5Q3LI72 72 aa5.47□□□□□ -1.53
TNFRSF1B-201ENST00000376259 CRCT1Q9UGL9 99 aa5.45□□□□□ -1.54
TNFRSF1B-201ENST00000376259 KRTAP4-8A0A0G2JLE6 195 aa5.44□□□□□ -1.54
TNFRSF1B-201ENST00000376259 KRTAP19-8Q3LI54 63 aa5.44□□□□□ -1.54
TNFRSF1B-201ENST00000376259 KRTAP4-8Q9BYQ9 185 aa5.44□□□□□ -1.54
TNFRSF1B-201ENST00000376259 OBSCNQ5VST9 7968 aa5.37□□□□□ -1.55
TNFRSF1B-201ENST00000376259 KRTAP9-3Q9BYQ3 159 aa5.35□□□□□ -1.55
TNFRSF1B-201ENST00000376259 INE1O15225 51 aa5.32□□□□□ -1.56
TNFRSF1B-201ENST00000376259 KRTAP4-7Q9BYR0 210 aa5.29□□□□□ -1.56
TNFRSF1B-201ENST00000376259 DSTQ03001 7570 aaKnown RBP5.27□□□□□ -1.57
TNFRSF1B-201ENST00000376259 LCE2BO14633 110 aa5.27□□□□□ -1.57
TNFRSF1B-201ENST00000376259 LCE3CQ5T5A8 94 aa5.27□□□□□ -1.57
TNFRSF1B-201ENST00000376259 SYNE1Q8NF91 8797 aaKnown RBP5.25□□□□□ -1.57
TNFRSF1B-201ENST00000376259 FCGBPQ9Y6R7 5405 aaPredicted RBP5.15□□□□□ -1.58
TNFRSF1B-201ENST00000376259 LCE2DQ5TA82 110 aaPredicted RBP5.03□□□□□ -1.6
TNFRSF1B-201ENST00000376259 SSPOA2VEC9 5147 aa4.99□□□□□ -1.61
TNFRSF1B-201ENST00000376259 KRTAP9-6A8MVA2 160 aa4.98□□□□□ -1.61
TNFRSF1B-201ENST00000376259 MUC12Q9UKN1 5478 aa4.94□□□□□ -1.62
TNFRSF1B-201ENST00000376259 MT1GP13640 62 aa4.92□□□□□ -1.62
TNFRSF1B-201ENST00000376259 KRTAP4-3Q9BYR4 195 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms